Wall clock time and date at job start Mon Mar 30 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46494 * 120.00080 * 275.00347 * 3 2 1 5 5 C 1.50697 * 109.47607 * 84.99862 * 4 3 2 6 6 H 1.08003 * 119.99367 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46939 * 120.00065 * 9 7 5 12 12 H 1.48501 * 109.47170 * 239.99605 * 9 7 5 13 13 S 1.65596 * 119.99655 * 94.99926 * 3 2 1 14 14 O 1.42101 * 104.27728 * 206.06886 * 13 3 2 15 15 O 1.42101 * 104.28108 * 333.92884 * 13 3 2 16 16 C 1.81403 * 104.45087 * 90.00050 * 13 3 2 17 17 H 1.09002 * 110.62835 * 64.29737 * 16 13 3 18 18 C 1.55140 * 110.70734 * 187.40100 * 16 13 3 19 19 C 1.55110 * 101.55654 * 153.90605 * 18 16 13 20 20 N 1.47847 * 104.90790 * 323.16002 * 19 18 16 21 21 C 1.47440 * 108.56575 * 23.97084 * 20 19 18 22 22 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.08998 * 109.46996 * 205.00499 * 4 3 2 28 28 H 1.09004 * 109.47165 * 324.99422 * 4 3 2 29 29 H 0.97007 * 119.99732 * 180.02562 * 8 7 5 30 30 H 1.09000 * 110.99037 * 272.12362 * 18 16 13 31 31 H 1.08996 * 110.99135 * 35.94901 * 18 16 13 32 32 H 1.09002 * 110.42555 * 204.23684 * 19 18 16 33 33 H 1.09007 * 110.31276 * 82.01664 * 19 18 16 34 34 H 1.00903 * 110.99628 * 261.70170 * 20 19 18 35 35 H 1.08994 * 109.88906 * 239.60694 * 21 20 19 36 36 H 1.09007 * 109.88822 * 118.42009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6356 6 1 -0.0225 2.5949 -0.9942 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6309 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.9270 3.9061 -2.2180 11 1 -0.7642 5.7098 -3.3467 12 1 -1.3618 3.7018 -4.5678 13 16 2.4122 2.1201 1.4287 14 8 2.2334 3.5055 1.1677 15 8 1.6208 1.4495 2.3999 16 6 4.1697 1.7388 1.6662 17 1 4.7711 2.1941 0.8794 18 6 4.6490 2.2092 3.0647 19 6 5.8354 1.2451 3.3271 20 7 5.4098 -0.0477 2.7496 21 6 4.3955 0.2129 1.7117 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9080 2.8918 -1.1512 28 1 2.4690 1.4183 -2.0480 29 1 1.6882 4.1507 -4.3901 30 1 4.9841 3.2459 3.0343 31 1 3.8662 2.0752 3.8112 32 1 6.0126 1.1425 4.3977 33 1 6.7342 1.6064 2.8273 34 1 5.0469 -0.6609 3.4640 35 1 3.4644 -0.2923 1.9681 36 1 4.7561 -0.1376 0.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687253635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:11 Heat of formation + Delta-G solvation = -67.420217 kcal Electronic energy + Delta-G solvation = -19174.028691 eV Core-core repulsion = 16206.353927 eV Total energy + Delta-G solvation = -2967.674764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.46202 -36.58162 -36.10643 -35.30044 -32.58556 -30.44947 -29.82645 -29.16126 -26.71753 -22.82815 -22.09834 -21.82611 -21.33558 -18.36025 -17.22896 -16.82632 -16.48289 -16.05578 -15.19260 -14.97666 -14.42168 -13.94160 -13.76035 -13.35776 -12.99359 -12.92123 -12.34250 -12.21796 -11.89761 -11.74677 -11.71719 -11.51850 -11.46288 -11.25113 -11.19015 -10.98967 -10.93033 -10.49741 -10.43479 -10.19287 -9.86674 -9.56177 -8.71551 -8.42562 -8.04706 -6.04620 -4.06839 0.75565 3.26105 3.31956 3.39789 3.45646 3.98939 4.16758 4.33839 4.45303 4.51792 4.85531 4.94508 5.06130 5.22373 5.29967 5.33359 5.43458 5.54509 5.64543 5.81546 5.84877 5.92458 5.99237 6.15796 6.40583 6.55779 6.71483 7.01181 7.16636 7.20195 7.39175 7.60929 7.93727 8.23219 8.95629 9.57531 11.04317 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030821 B = 0.006625 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.260759 B = 4225.220752 C = 4435.005520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.983 5.983 4 C 0.256 3.744 5 C -0.520 4.520 6 H 0.064 0.936 7 C 0.060 3.940 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 S 2.611 3.389 14 O -0.936 6.936 15 O -0.970 6.970 16 C -0.632 4.632 17 H 0.143 0.857 18 C -0.136 4.136 19 C 0.057 3.943 20 N -0.680 5.680 21 C 0.077 3.923 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.341 0.659 35 H 0.064 0.936 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -7.379 10.825 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.008 3.992 3 N -0.822 5.822 4 C 0.134 3.866 5 C -0.559 4.559 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 S 2.701 3.299 14 O -0.926 6.926 15 O -0.960 6.960 16 C -0.739 4.739 17 H 0.161 0.839 18 C -0.176 4.176 19 C -0.073 4.073 20 N -0.308 5.308 21 C -0.053 4.053 22 H 0.074 0.926 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.082 0.918 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.285 -6.878 10.724 14.206 hybrid contribution -0.989 0.574 -0.169 1.156 sum 5.296 -6.304 10.555 13.386 Atomic orbital electron populations 1.22247 0.96253 1.00760 1.03829 1.21035 0.95066 0.82159 1.00985 1.57472 1.77883 1.23104 1.23774 1.19091 0.97690 0.90967 0.78848 1.21549 0.96322 1.31531 1.06508 0.91778 1.24934 0.96850 0.96105 0.96301 1.69928 1.29225 1.40882 1.13722 0.86486 0.83888 0.79179 0.78165 1.19653 1.20895 1.21034 1.05090 0.76358 0.74758 0.73694 1.93629 1.84027 1.31184 1.83712 1.93517 1.64657 1.76362 1.61448 1.32188 1.29937 1.05617 1.06156 0.83921 1.22998 0.99921 1.01951 0.92733 1.22868 0.97319 0.87980 0.99122 1.61723 1.39648 1.13798 1.15675 1.22363 0.94856 0.90055 0.97987 0.92638 0.90300 0.93165 0.90973 0.92175 0.94597 0.94560 0.92827 0.88952 0.90407 0.90935 0.89994 0.84381 0.91791 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 9.83 37.16 0.37 -2.66 16 2 C 0.13 2.25 5.79 -4.04 -0.02 2.22 16 3 N -0.98 -19.60 2.64 -115.67 -0.31 -19.91 16 4 C 0.26 6.22 5.03 -5.20 -0.03 6.19 16 5 C -0.52 -14.31 8.41 -34.44 -0.29 -14.60 16 6 H 0.06 1.78 6.89 -52.48 -0.36 1.42 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 S 2.61 49.51 4.71 -107.50 -0.51 49.01 16 14 O -0.94 -21.99 16.99 -57.54 -0.98 -22.97 16 15 O -0.97 -19.11 16.35 -57.54 -0.94 -20.05 16 16 C -0.63 -9.02 3.67 -24.91 -0.09 -9.11 16 17 H 0.14 1.99 8.14 -51.93 -0.42 1.57 16 18 C -0.14 -1.64 6.56 -24.48 -0.16 -1.80 16 19 C 0.06 0.59 7.57 -2.19 -0.02 0.57 16 20 N -0.68 -7.64 7.39 -110.67 -0.82 -8.46 16 21 C 0.08 0.98 6.85 -2.84 -0.02 0.96 16 22 H 0.05 1.04 7.90 -51.93 -0.41 0.62 16 23 H 0.08 1.56 6.59 -51.93 -0.34 1.22 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 26 H 0.06 0.85 5.77 -51.93 -0.30 0.55 16 27 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 28 H 0.04 0.89 8.00 -51.93 -0.42 0.47 16 29 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.91 8.04 -51.93 -0.42 0.50 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 34 H 0.34 3.20 8.91 -39.29 -0.35 2.85 16 35 H 0.06 0.78 5.69 -51.93 -0.30 0.49 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -33.05 301.98 -9.02 -42.07 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.37 Total: 0.88 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.36 Total: -16.64 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.39 Total: -53.66 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.92 Total: -43.03 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 49.51 SS G_CDS: -0.51 Total: 49.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.05 -9.02 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687253635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.350 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds