Wall clock time and date at job start Mon Mar 30 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46494 * 120.00080 * 275.00347 * 3 2 1 5 5 C 1.50697 * 109.47607 * 84.99862 * 4 3 2 6 6 H 1.08003 * 119.99367 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00325 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99491 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00078 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47122 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46939 * 120.00065 * 9 7 5 12 12 H 1.48501 * 109.47170 * 239.99605 * 9 7 5 13 13 S 1.65596 * 119.99655 * 94.99926 * 3 2 1 14 14 O 1.42101 * 104.27728 * 206.06886 * 13 3 2 15 15 O 1.42101 * 104.28108 * 333.92884 * 13 3 2 16 16 C 1.81403 * 104.45087 * 90.00050 * 13 3 2 17 17 H 1.09002 * 110.62835 * 64.29737 * 16 13 3 18 18 C 1.55140 * 110.70734 * 187.40100 * 16 13 3 19 19 C 1.55110 * 101.55654 * 153.90605 * 18 16 13 20 20 N 1.47847 * 104.90790 * 323.16002 * 19 18 16 21 21 C 1.47440 * 108.56575 * 23.97084 * 20 19 18 22 22 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 26 26 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 27 27 H 1.08998 * 109.46996 * 205.00499 * 4 3 2 28 28 H 1.09004 * 109.47165 * 324.99422 * 4 3 2 29 29 H 0.97007 * 119.99732 * 180.02562 * 8 7 5 30 30 H 1.09000 * 110.99037 * 272.12362 * 18 16 13 31 31 H 1.08996 * 110.99135 * 35.94901 * 18 16 13 32 32 H 1.09002 * 110.42555 * 204.23684 * 19 18 16 33 33 H 1.09007 * 110.31276 * 82.01664 * 19 18 16 34 34 H 1.00903 * 110.99628 * 261.70170 * 20 19 18 35 35 H 1.08994 * 109.88906 * 239.60694 * 21 20 19 36 36 H 1.09007 * 109.88822 * 118.42009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6356 6 1 -0.0225 2.5949 -0.9942 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6309 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.9270 3.9061 -2.2180 11 1 -0.7642 5.7098 -3.3467 12 1 -1.3618 3.7018 -4.5678 13 16 2.4122 2.1201 1.4287 14 8 2.2334 3.5055 1.1677 15 8 1.6208 1.4495 2.3999 16 6 4.1697 1.7388 1.6662 17 1 4.7711 2.1941 0.8794 18 6 4.6490 2.2092 3.0647 19 6 5.8354 1.2451 3.3271 20 7 5.4098 -0.0477 2.7496 21 6 4.3955 0.2129 1.7117 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9080 2.8918 -1.1512 28 1 2.4690 1.4183 -2.0480 29 1 1.6882 4.1507 -4.3901 30 1 4.9841 3.2459 3.0343 31 1 3.8662 2.0752 3.8112 32 1 6.0126 1.1425 4.3977 33 1 6.7342 1.6064 2.8273 34 1 5.0469 -0.6609 3.4640 35 1 3.4644 -0.2923 1.9681 36 1 4.7561 -0.1376 0.7446 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687253635.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:10 Heat of formation + Delta-G solvation = -93.803018 kcal Electronic energy + Delta-G solvation = -19175.172735 eV Core-core repulsion = 16206.353927 eV Total energy + Delta-G solvation = -2968.818808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44244 -38.15157 -37.73364 -36.91889 -34.63845 -31.49790 -31.38539 -30.13953 -28.61366 -24.69176 -23.55008 -22.79041 -22.47208 -19.79988 -18.73570 -18.34918 -18.26696 -17.35941 -16.71026 -16.26539 -16.14330 -15.33952 -14.90899 -14.71894 -14.66046 -14.08216 -13.99410 -13.63535 -13.31644 -13.16406 -13.13048 -12.96885 -12.83542 -12.80859 -12.75652 -12.68886 -12.25786 -12.15399 -12.06955 -11.66300 -11.61047 -11.32710 -10.56333 -9.75935 -9.55730 -8.17895 -6.26528 -0.71567 1.36889 1.39651 1.50665 1.76703 2.41811 2.88979 2.98106 3.13390 3.18837 3.29413 3.71688 3.88089 3.99194 4.08090 4.26745 4.40203 4.51864 4.58257 4.63884 4.73762 4.79726 4.84354 4.98454 5.05822 5.18433 5.23549 5.49245 5.59130 5.67303 5.75487 5.97805 6.16313 6.41425 6.81183 7.40750 8.89985 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030821 B = 0.006625 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.260759 B = 4225.220752 C = 4435.005520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.990 5.990 4 C 0.270 3.730 5 C -0.533 4.533 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.270 1.270 13 S 2.607 3.393 14 O -0.993 6.993 15 O -0.983 6.983 16 C -0.606 4.606 17 H 0.148 0.852 18 C -0.145 4.145 19 C 0.060 3.940 20 N -0.681 5.681 21 C 0.075 3.925 22 H 0.036 0.964 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.016 0.984 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.353 0.647 35 H 0.070 0.930 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -8.747 11.868 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 N -0.828 5.828 4 C 0.147 3.853 5 C -0.573 4.573 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.195 1.195 13 S 2.703 3.297 14 O -0.984 6.984 15 O -0.973 6.973 16 C -0.719 4.719 17 H 0.166 0.834 18 C -0.185 4.185 19 C -0.070 4.070 20 N -0.311 5.311 21 C -0.055 4.055 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.088 0.912 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.130 -8.260 11.767 16.048 hybrid contribution -1.199 0.940 -0.385 1.571 sum 5.931 -7.320 11.382 14.775 Atomic orbital electron populations 1.22233 0.97073 1.02372 1.01391 1.21345 0.94536 0.80896 1.03346 1.57311 1.79234 1.23999 1.22275 1.18641 0.95562 0.90547 0.80578 1.21867 0.97348 1.31681 1.06372 0.92967 1.25684 0.99988 0.96727 0.96480 1.70007 1.30813 1.41692 1.14188 0.85625 0.80215 0.78288 0.78289 1.19715 1.20725 1.19544 1.04925 0.78314 0.73377 0.73050 1.93557 1.86027 1.34482 1.84312 1.93488 1.66641 1.75960 1.61226 1.31848 1.24107 1.07726 1.08183 0.83381 1.23230 1.00965 1.03361 0.90946 1.22957 0.96269 0.86702 1.01040 1.61720 1.38922 1.14430 1.16028 1.22449 0.95753 0.88188 0.99109 0.94438 0.93245 0.89574 0.89353 0.88963 0.96637 0.94939 0.92559 0.87874 0.90059 0.88050 0.89518 0.82993 0.91218 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.95 9.83 71.98 0.71 -5.25 16 2 C 0.12 4.01 5.79 86.38 0.50 4.51 16 3 N -0.99 -39.65 2.64 -519.85 -1.37 -41.02 16 4 C 0.27 13.46 5.03 85.63 0.43 13.89 16 5 C -0.53 -30.15 8.41 25.60 0.22 -29.93 16 6 H 0.05 3.00 6.89 -2.91 -0.02 2.98 16 7 C 0.01 0.57 5.46 84.65 0.46 1.03 16 8 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 9 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 S 2.61 99.07 4.71 -56.49 -0.27 98.81 16 14 O -0.99 -48.31 16.99 -127.65 -2.17 -50.48 16 15 O -0.98 -38.33 16.35 -127.65 -2.09 -40.42 16 16 C -0.61 -16.27 3.67 31.77 0.12 -16.15 16 17 H 0.15 3.92 8.14 -2.39 -0.02 3.90 16 18 C -0.14 -3.13 6.56 32.05 0.21 -2.92 16 19 C 0.06 1.01 7.57 86.84 0.66 1.67 16 20 N -0.68 -12.84 7.39 -504.05 -3.73 -16.57 16 21 C 0.08 1.69 6.85 86.65 0.59 2.29 16 22 H 0.04 1.40 7.90 -2.39 -0.02 1.38 16 23 H 0.05 1.98 6.59 -2.39 -0.02 1.97 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.09 2.58 8.00 -2.39 -0.02 2.56 16 26 H 0.09 2.39 5.77 -2.39 -0.01 2.37 16 27 H 0.02 0.84 7.61 -2.39 -0.02 0.82 16 28 H 0.03 1.63 8.00 -2.39 -0.02 1.61 16 29 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.08 1.72 8.04 -2.39 -0.02 1.71 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 34 H 0.35 5.26 8.91 -89.69 -0.80 4.46 16 35 H 0.07 1.49 5.69 -2.39 -0.01 1.48 16 36 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -72.36 301.98 -3.14 -75.49 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.28 Total: 11.90 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.89 Total: -30.86 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -4.81 Total: -111.78 kcal Atomic # 8 Polarization: -86.65 SS G_CDS: -4.26 Total: -90.90 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 99.07 SS G_CDS: -0.27 Total: 98.81 kcal Total: -72.36 -3.14 -75.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687253635.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.309 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds