Wall clock time and date at job start Mon Mar 30 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47295 * 2 1 4 4 C 1.50702 * 109.46712 * 240.00171 * 2 1 3 5 5 H 1.08001 * 119.99650 * 245.45253 * 4 2 1 6 6 C 1.37878 * 120.00472 * 65.45587 * 4 2 1 7 7 N 1.31519 * 119.99612 * 9.61052 * 6 4 2 8 8 Si 1.86793 * 120.00331 * 189.61387 * 6 4 2 9 9 H 1.48507 * 109.47434 * 84.99368 * 8 6 4 10 10 H 1.48498 * 109.47190 * 204.99147 * 8 6 4 11 11 H 1.48500 * 109.47285 * 324.99494 * 8 6 4 12 12 N 1.46498 * 109.47484 * 120.00124 * 2 1 3 13 13 C 1.46499 * 119.99814 * 59.99749 * 12 2 1 14 14 S 1.65596 * 120.00072 * 240.00086 * 12 2 1 15 15 O 1.42093 * 104.27681 * 26.06624 * 14 12 2 16 16 O 1.42100 * 104.27771 * 153.92969 * 14 12 2 17 17 C 1.81405 * 104.44606 * 269.99627 * 14 12 2 18 18 H 1.08999 * 110.28860 * 62.87463 * 17 14 12 19 19 C 1.54265 * 110.32212 * 184.99629 * 17 14 12 20 20 C 1.54382 * 105.05856 * 118.89819 * 19 17 14 21 21 N 1.48559 * 104.59335 * 23.85279 * 20 19 17 22 22 C 1.48562 * 104.22427 * 320.51728 * 21 20 19 23 23 H 1.09000 * 109.46611 * 303.28758 * 1 2 3 24 24 H 1.08997 * 109.47556 * 63.29024 * 1 2 3 25 25 H 1.09001 * 109.47144 * 183.29273 * 1 2 3 26 26 H 0.96992 * 120.00000 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47286 * 269.99925 * 13 12 2 28 28 H 1.08996 * 109.47632 * 30.00028 * 13 12 2 29 29 H 1.09000 * 109.47321 * 150.00517 * 13 12 2 30 30 H 1.08994 * 110.32710 * 237.79333 * 19 17 14 31 31 H 1.08996 * 110.32355 * 0.02562 * 19 17 14 32 32 H 1.08999 * 110.41426 * 142.63302 * 20 19 17 33 33 H 1.09002 * 110.40943 * 264.96146 * 20 19 17 34 34 H 1.00899 * 111.00529 * 80.07424 * 21 20 19 35 35 H 1.08999 * 110.41118 * 280.70344 * 22 21 20 36 36 H 1.09006 * 110.41204 * 158.26230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7944 -0.1774 -2.4797 7 7 1.3000 1.0360 -2.5936 8 14 2.1742 -1.1787 -4.0102 9 1 1.0213 -2.0608 -4.3235 10 1 2.4211 -0.2625 -5.1524 11 1 3.3821 -2.0089 -3.7714 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1142 2.2861 15 8 2.6123 1.4795 2.1233 16 8 2.7434 -0.5613 3.5155 17 6 4.6650 -0.1730 1.7056 18 1 4.8052 0.2648 0.7174 19 6 5.6809 0.4202 2.7035 20 6 6.5157 -0.7840 3.1896 21 7 6.3894 -1.7898 2.1036 22 6 4.9714 -1.6857 1.6728 23 1 -0.3632 0.5640 0.8591 24 1 -0.3634 0.4619 -0.9180 25 1 -0.3633 -1.0260 0.0590 26 1 1.1330 1.4111 -3.4723 27 1 0.7377 -2.1444 1.9993 28 1 1.5295 -2.5969 0.4708 29 1 2.4629 -2.5819 1.9863 30 1 6.3209 1.1478 2.2046 31 1 5.1614 0.8835 3.5422 32 1 7.5586 -0.4954 3.3210 33 1 6.1101 -1.1760 4.1223 34 1 7.0154 -1.5791 1.3409 35 1 4.3229 -2.2201 2.3670 36 1 4.8515 -2.0760 0.6621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687254777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:04 Heat of formation + Delta-G solvation = -66.609577 kcal Electronic energy + Delta-G solvation = -19385.765933 eV Core-core repulsion = 16418.126321 eV Total energy + Delta-G solvation = -2967.639612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.44543 -36.60205 -36.21184 -35.38922 -32.63415 -30.19612 -29.39723 -28.78785 -25.58760 -25.19335 -22.15687 -21.29644 -20.64154 -18.19505 -17.25320 -16.63624 -16.39535 -16.30314 -15.43938 -14.71191 -14.10805 -14.08156 -13.57658 -13.36654 -13.12386 -12.72468 -12.20698 -12.02541 -11.85158 -11.67501 -11.59735 -11.48531 -11.34640 -11.19941 -11.08848 -11.02160 -10.86909 -10.48775 -10.34829 -10.26514 -9.97024 -9.31483 -8.87240 -8.50308 -7.95731 -6.17132 -4.22877 0.81000 3.21087 3.25805 3.29018 3.32815 4.04857 4.25146 4.32488 4.48412 4.61403 4.82079 5.07030 5.14627 5.28013 5.33741 5.44281 5.58551 5.67506 5.80351 5.88349 5.99122 6.17377 6.33349 6.48196 6.62078 6.76751 6.81786 7.04980 7.22908 7.38131 7.57247 7.71490 7.89507 8.18927 8.80515 9.42635 10.89941 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.008135 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.368328 B = 3440.980763 C = 3998.509258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.264 3.736 3 H 0.066 0.934 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.981 5.981 13 C 0.103 3.897 14 S 2.614 3.386 15 O -0.958 6.958 16 O -0.971 6.971 17 C -0.639 4.639 18 H 0.145 0.855 19 C -0.130 4.130 20 C 0.039 3.961 21 N -0.660 5.660 22 C 0.069 3.931 23 H 0.018 0.982 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.265 0.735 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.340 0.660 35 H 0.089 0.911 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.357 -3.944 7.058 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.573 4.573 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.821 5.821 13 C -0.043 4.043 14 S 2.706 3.294 15 O -0.948 6.948 16 O -0.961 6.961 17 C -0.748 4.748 18 H 0.163 0.837 19 C -0.171 4.171 20 C -0.091 4.091 21 N -0.286 5.286 22 C -0.061 4.061 23 H 0.037 0.963 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.971 -3.952 8.076 11.376 hybrid contribution 0.531 0.276 -2.059 2.144 sum 7.502 -3.676 6.017 10.295 Atomic orbital electron populations 1.21959 0.98172 0.99211 1.00388 1.18764 0.91644 0.93324 0.80122 0.91652 1.21363 1.36798 1.08802 0.90342 0.91769 1.24942 0.95097 0.94599 0.99013 1.69964 1.44047 1.13731 1.24263 0.86613 0.78754 0.80062 0.82554 1.20432 1.21298 1.19975 1.57392 1.63354 1.21404 1.39933 1.21288 0.99301 0.81901 1.01848 1.04871 0.76104 0.74324 0.74110 1.93570 1.80826 1.33999 1.86373 1.93522 1.84018 1.75753 1.42786 1.32058 1.25026 1.06561 1.11140 0.83718 1.22637 0.97554 0.99842 0.97049 1.23077 0.99854 0.89585 0.96592 1.63217 1.04713 1.48393 1.12308 1.22797 0.90968 0.89623 1.02745 0.96297 0.90685 0.94595 0.92530 0.93706 0.90172 0.92915 0.89781 0.91289 0.90261 0.89535 0.84504 0.89284 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.12 37.16 0.34 -2.86 16 2 C 0.26 6.31 2.43 -69.08 -0.17 6.15 16 3 H 0.07 1.75 6.82 -51.93 -0.35 1.40 16 4 C -0.53 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.52 7.16 -52.49 -0.38 1.14 16 6 C 0.07 1.73 5.17 -17.82 -0.09 1.64 16 7 N -0.88 -24.06 12.17 55.43 0.67 -23.39 16 8 Si 0.89 19.91 29.55 -169.99 -5.02 14.89 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 N -0.98 -19.80 2.90 -115.86 -0.34 -20.14 16 13 C 0.10 1.77 8.95 59.85 0.54 2.30 16 14 S 2.61 50.02 4.51 -107.50 -0.49 49.53 16 15 O -0.96 -21.79 16.57 -57.54 -0.95 -22.75 16 16 O -0.97 -19.29 16.65 -57.54 -0.96 -20.25 16 17 C -0.64 -9.82 3.79 -25.35 -0.10 -9.92 16 18 H 0.14 2.27 8.14 -51.93 -0.42 1.85 16 19 C -0.13 -1.69 6.67 -25.35 -0.17 -1.85 16 20 C 0.04 0.45 7.47 -2.18 -0.02 0.43 16 21 N -0.66 -8.22 7.62 -109.66 -0.84 -9.05 16 22 C 0.07 0.98 6.53 -2.18 -0.01 0.96 16 23 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 1.88 6.84 -51.93 -0.36 1.53 16 25 H 0.03 0.76 7.56 -51.93 -0.39 0.37 16 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.37 6.92 -51.93 -0.36 1.01 16 29 H 0.05 0.77 5.88 -51.93 -0.31 0.47 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.88 7.64 -51.93 -0.40 0.48 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.34 3.71 8.92 -39.29 -0.35 3.36 16 35 H 0.09 1.27 5.85 -51.93 -0.30 0.97 16 36 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -30.39 298.31 -8.67 -39.05 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.29 Total: 4.26 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 0.04 Total: -16.65 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.50 Total: -52.58 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.91 Total: -43.00 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 50.02 SS G_CDS: -0.49 Total: 49.53 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.39 -8.67 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.556 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds