Wall clock time and date at job start Mon Mar 30 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47295 * 2 1 4 4 C 1.50702 * 109.46712 * 240.00171 * 2 1 3 5 5 H 1.08001 * 119.99650 * 245.45253 * 4 2 1 6 6 C 1.37878 * 120.00472 * 65.45587 * 4 2 1 7 7 N 1.31519 * 119.99612 * 9.61052 * 6 4 2 8 8 Si 1.86793 * 120.00331 * 189.61387 * 6 4 2 9 9 H 1.48507 * 109.47434 * 84.99368 * 8 6 4 10 10 H 1.48498 * 109.47190 * 204.99147 * 8 6 4 11 11 H 1.48500 * 109.47285 * 324.99494 * 8 6 4 12 12 N 1.46498 * 109.47484 * 120.00124 * 2 1 3 13 13 C 1.46499 * 119.99814 * 59.99749 * 12 2 1 14 14 S 1.65596 * 120.00072 * 240.00086 * 12 2 1 15 15 O 1.42093 * 104.27681 * 26.06624 * 14 12 2 16 16 O 1.42100 * 104.27771 * 153.92969 * 14 12 2 17 17 C 1.81405 * 104.44606 * 269.99627 * 14 12 2 18 18 H 1.08999 * 110.28860 * 62.87463 * 17 14 12 19 19 C 1.54265 * 110.32212 * 184.99629 * 17 14 12 20 20 C 1.54382 * 105.05856 * 118.89819 * 19 17 14 21 21 N 1.48559 * 104.59335 * 23.85279 * 20 19 17 22 22 C 1.48562 * 104.22427 * 320.51728 * 21 20 19 23 23 H 1.09000 * 109.46611 * 303.28758 * 1 2 3 24 24 H 1.08997 * 109.47556 * 63.29024 * 1 2 3 25 25 H 1.09001 * 109.47144 * 183.29273 * 1 2 3 26 26 H 0.96992 * 120.00000 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47286 * 269.99925 * 13 12 2 28 28 H 1.08996 * 109.47632 * 30.00028 * 13 12 2 29 29 H 1.09000 * 109.47321 * 150.00517 * 13 12 2 30 30 H 1.08994 * 110.32710 * 237.79333 * 19 17 14 31 31 H 1.08996 * 110.32355 * 0.02562 * 19 17 14 32 32 H 1.08999 * 110.41426 * 142.63302 * 20 19 17 33 33 H 1.09002 * 110.40943 * 264.96146 * 20 19 17 34 34 H 1.00899 * 111.00529 * 80.07424 * 21 20 19 35 35 H 1.08999 * 110.41118 * 280.70344 * 22 21 20 36 36 H 1.09006 * 110.41204 * 158.26230 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5785 -1.6370 -1.1339 6 6 1.7944 -0.1774 -2.4797 7 7 1.3000 1.0360 -2.5936 8 14 2.1742 -1.1787 -4.0102 9 1 1.0213 -2.0608 -4.3235 10 1 2.4211 -0.2625 -5.1524 11 1 3.3821 -2.0089 -3.7714 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1142 2.2861 15 8 2.6123 1.4795 2.1233 16 8 2.7434 -0.5613 3.5155 17 6 4.6650 -0.1730 1.7056 18 1 4.8052 0.2648 0.7174 19 6 5.6809 0.4202 2.7035 20 6 6.5157 -0.7840 3.1896 21 7 6.3894 -1.7898 2.1036 22 6 4.9714 -1.6857 1.6728 23 1 -0.3632 0.5640 0.8591 24 1 -0.3634 0.4619 -0.9180 25 1 -0.3633 -1.0260 0.0590 26 1 1.1330 1.4111 -3.4723 27 1 0.7377 -2.1444 1.9993 28 1 1.5295 -2.5969 0.4708 29 1 2.4629 -2.5819 1.9863 30 1 6.3209 1.1478 2.2046 31 1 5.1614 0.8835 3.5422 32 1 7.5586 -0.4954 3.3210 33 1 6.1101 -1.1760 4.1223 34 1 7.0154 -1.5791 1.3409 35 1 4.3229 -2.2201 2.3670 36 1 4.8515 -2.0760 0.6621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687254777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:04 Heat of formation + Delta-G solvation = -90.480725 kcal Electronic energy + Delta-G solvation = -19386.801064 eV Core-core repulsion = 16418.126321 eV Total energy + Delta-G solvation = -2968.674742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.51561 -38.21795 -37.89300 -37.00951 -34.49627 -31.29497 -31.09849 -29.93620 -27.23247 -27.02382 -23.19888 -22.77394 -22.11127 -19.72412 -18.73654 -18.30024 -17.85145 -17.63445 -17.03959 -16.42545 -15.38334 -15.19991 -15.07106 -14.78340 -14.53394 -14.44212 -13.74349 -13.46240 -13.29612 -13.27310 -13.14383 -12.92093 -12.81952 -12.75871 -12.61644 -12.33474 -12.22770 -12.18237 -12.14564 -11.88263 -11.50750 -11.10121 -10.47242 -9.88260 -9.58485 -8.11994 -6.23602 -0.68352 1.46187 1.48713 1.56061 1.76586 2.45310 2.82069 2.98394 3.18444 3.27678 3.30677 3.81210 3.88572 4.08424 4.19487 4.29218 4.46279 4.62942 4.70454 4.79410 4.81377 4.84786 4.93091 5.00120 5.03048 5.12788 5.26841 5.48562 5.56046 5.66379 5.84465 6.03312 6.27186 6.35235 6.87058 7.45467 8.95254 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022352 B = 0.008135 C = 0.007001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.368328 B = 3440.980763 C = 3998.509258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H 0.028 0.972 4 C -0.532 4.532 5 H 0.077 0.923 6 C 0.018 3.982 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.990 5.990 13 C 0.095 3.905 14 S 2.611 3.389 15 O -1.004 7.004 16 O -0.982 6.982 17 C -0.617 4.617 18 H 0.143 0.857 19 C -0.138 4.138 20 C 0.040 3.960 21 N -0.658 5.658 22 C 0.068 3.932 23 H 0.019 0.981 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.351 0.649 35 H 0.088 0.912 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -5.737 7.157 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.046 0.954 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.219 1.219 11 H -0.186 1.186 12 N -0.828 5.828 13 C -0.050 4.050 14 S 2.708 3.292 15 O -0.994 6.994 16 O -0.972 6.972 17 C -0.731 4.731 18 H 0.161 0.839 19 C -0.179 4.179 20 C -0.090 4.090 21 N -0.285 5.285 22 C -0.063 4.063 23 H 0.038 0.962 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.167 0.833 35 H 0.106 0.894 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.848 -5.765 8.204 13.373 hybrid contribution 0.005 0.836 -2.003 2.171 sum 8.853 -4.929 6.201 11.879 Atomic orbital electron populations 1.21875 0.98224 0.99945 0.99231 1.18421 0.91687 0.91881 0.81517 0.95382 1.21651 1.36083 1.08881 0.90511 0.90472 1.25718 0.95223 0.95333 1.01980 1.70104 1.45702 1.15420 1.24694 0.85611 0.78937 0.78515 0.78797 1.20173 1.21893 1.18574 1.57237 1.64640 1.22401 1.38544 1.21498 1.00626 0.80406 1.02438 1.04749 0.77538 0.73106 0.73778 1.93511 1.82527 1.36556 1.86836 1.93498 1.85016 1.75461 1.43238 1.31818 1.21481 1.08400 1.11408 0.83925 1.22847 0.97341 1.01098 0.96579 1.23176 1.01402 0.88363 0.96023 1.63199 1.03660 1.48745 1.12920 1.22851 0.92216 0.88099 1.03120 0.96202 0.92950 0.92931 0.92770 0.93305 0.89986 0.90303 0.87763 0.91388 0.87137 0.89666 0.83274 0.89390 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 9.12 71.98 0.66 -5.65 16 2 C 0.27 13.04 2.43 44.25 0.11 13.14 16 3 H 0.03 1.58 6.82 -2.39 -0.02 1.56 16 4 C -0.53 -26.09 8.01 25.60 0.20 -25.89 16 5 H 0.08 3.51 7.16 -2.91 -0.02 3.49 16 6 C 0.02 0.90 5.17 84.65 0.44 1.34 16 7 N -0.92 -51.14 12.17 21.45 0.26 -50.87 16 8 Si 0.96 40.31 29.55 68.60 2.03 42.34 16 9 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 12 N -0.99 -39.64 2.90 -520.46 -1.51 -41.15 16 13 C 0.10 3.14 8.95 127.77 1.14 4.29 16 14 S 2.61 99.65 4.51 -56.49 -0.25 99.40 16 15 O -1.00 -47.11 16.57 -127.65 -2.12 -49.22 16 16 O -0.98 -38.39 16.65 -127.65 -2.13 -40.52 16 17 C -0.62 -17.98 3.79 31.49 0.12 -17.86 16 18 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 19 C -0.14 -3.23 6.67 31.49 0.21 -3.02 16 20 C 0.04 0.78 7.47 86.45 0.65 1.43 16 21 N -0.66 -14.12 7.62 -500.85 -3.82 -17.93 16 22 C 0.07 1.75 6.53 86.45 0.56 2.31 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 2.69 6.84 -2.39 -0.02 2.68 16 25 H 0.05 2.24 7.56 -2.39 -0.02 2.22 16 26 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.66 6.92 -2.39 -0.02 2.64 16 29 H 0.08 2.15 5.88 -2.39 -0.01 2.14 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.63 7.64 -2.39 -0.02 1.61 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.35 6.34 8.92 -89.69 -0.80 5.54 16 35 H 0.09 2.29 5.85 -2.39 -0.01 2.27 16 36 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 Total: -1.00 -65.29 298.31 -3.17 -68.45 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.28 Total: 19.43 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 4.09 Total: -29.91 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -5.07 Total: -109.96 kcal Atomic # 8 Polarization: -85.50 SS G_CDS: -4.24 Total: -89.74 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 99.65 SS G_CDS: -0.25 Total: 99.40 kcal Total: -65.29 -3.17 -68.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.026 kcal (2) G-P(sol) polarization free energy of solvation -65.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds