Wall clock time and date at job start Mon Mar 30 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47133 * 2 1 4 4 C 1.50697 * 109.47125 * 120.00420 * 2 1 3 5 5 H 1.08001 * 120.00073 * 120.00481 * 4 2 1 6 6 C 1.37879 * 120.00059 * 299.99502 * 4 2 1 7 7 N 1.31514 * 119.99806 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00034 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46870 * 60.00389 * 8 6 4 10 10 H 1.48499 * 109.46763 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47088 * 300.00403 * 8 6 4 12 12 N 1.46501 * 109.47109 * 240.00325 * 2 1 3 13 13 C 1.46496 * 119.99951 * 299.99993 * 12 2 1 14 14 S 1.65599 * 119.99889 * 119.99756 * 12 2 1 15 15 O 1.42105 * 104.27797 * 206.07318 * 14 12 2 16 16 O 1.42101 * 104.27901 * 333.93026 * 14 12 2 17 17 C 1.81397 * 104.44825 * 90.00206 * 14 12 2 18 18 H 1.08998 * 110.27385 * 300.70046 * 17 14 12 19 19 C 1.54601 * 110.31075 * 178.61182 * 17 14 12 20 20 C 1.55097 * 102.84456 * 219.18843 * 19 17 14 21 21 N 1.48530 * 103.28914 * 37.30000 * 20 19 17 22 22 C 1.47898 * 105.81838 * 320.85130 * 21 20 19 23 23 H 1.09003 * 109.47026 * 59.99817 * 1 2 3 24 24 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47241 * 299.99867 * 1 2 3 26 26 H 0.97001 * 120.00223 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.47121 * 269.99817 * 13 12 2 28 28 H 1.09004 * 109.47485 * 30.00187 * 13 12 2 29 29 H 1.09004 * 109.46938 * 149.99750 * 13 12 2 30 30 H 1.09006 * 110.71963 * 337.48345 * 19 17 14 31 31 H 1.08995 * 110.72438 * 100.76877 * 19 17 14 32 32 H 1.09004 * 110.59343 * 278.87026 * 20 19 17 33 33 H 1.09001 * 110.83121 * 155.84964 * 20 19 17 34 34 H 1.00895 * 111.00401 * 200.33110 * 21 20 19 35 35 H 1.09005 * 109.91383 * 265.96977 * 22 21 20 36 36 H 1.09004 * 110.07679 * 144.77544 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.8064 -1.1212 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0075 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9703 0.1143 -2.2862 15 8 2.7431 -0.5610 -3.5158 16 8 2.6121 1.4798 -2.1233 17 6 4.6648 -0.1728 -1.7059 18 1 4.7868 0.2093 -0.6924 19 6 5.6796 0.4999 -2.6587 20 6 6.8310 -0.5371 -2.7241 21 7 6.1183 -1.8401 -2.7072 22 6 4.9991 -1.6752 -1.7545 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7083 1.1608 3.4844 27 1 2.4157 -2.7376 -0.9719 28 1 0.6904 -2.3002 -0.9848 29 1 1.6237 -2.2850 -2.5004 30 1 5.2408 0.6513 -3.6450 31 1 6.0317 1.4439 -2.2430 32 1 7.4814 -0.4432 -1.8544 33 1 7.4033 -0.4235 -3.6448 34 1 6.7336 -2.5852 -2.4168 35 1 5.2995 -2.0210 -0.7654 36 1 4.1305 -2.2380 -2.0965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687254780.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:07 Heat of formation + Delta-G solvation = -87.305345 kcal Electronic energy + Delta-G solvation = -19356.874922 eV Core-core repulsion = 16388.337874 eV Total energy + Delta-G solvation = -2968.537048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35949 -38.19687 -37.90736 -36.98218 -34.52212 -31.62227 -31.00120 -29.93687 -27.31911 -26.97954 -22.89541 -22.75695 -22.15747 -19.70291 -18.65601 -18.27535 -18.02227 -17.91631 -16.96848 -16.35921 -15.57034 -15.24653 -14.82031 -14.62691 -14.46911 -14.09494 -13.66570 -13.52798 -13.29987 -13.20841 -13.14172 -13.09316 -12.91561 -12.77170 -12.72490 -12.57823 -12.24137 -12.16957 -12.11791 -11.85270 -11.50193 -11.04867 -10.49195 -9.59062 -9.54294 -8.08611 -6.24475 -0.66440 1.46219 1.47676 1.54742 1.77641 2.45076 2.84915 3.00101 3.19357 3.23323 3.32203 3.66674 3.97393 4.12338 4.17227 4.29911 4.56699 4.65644 4.72877 4.75892 4.80343 4.82078 4.90569 4.96780 5.04030 5.17294 5.18896 5.60904 5.62301 5.73820 5.85886 6.09212 6.29626 6.40066 6.85708 7.45802 8.95819 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022197 B = 0.008082 C = 0.006947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.110883 B = 3463.464562 C = 4029.787950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.271 3.729 3 H 0.026 0.974 4 C -0.531 4.531 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.291 1.291 11 H -0.269 1.269 12 N -0.991 5.991 13 C 0.091 3.909 14 S 2.611 3.389 15 O -0.980 6.980 16 O -1.001 7.001 17 C -0.595 4.595 18 H 0.147 0.853 19 C -0.113 4.113 20 C 0.048 3.952 21 N -0.678 5.678 22 C 0.070 3.930 23 H 0.016 0.984 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.263 0.737 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.356 0.644 35 H 0.073 0.927 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.648 -5.613 -6.454 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.167 3.833 3 H 0.044 0.956 4 C -0.571 4.571 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.217 1.217 11 H -0.194 1.194 12 N -0.829 5.829 13 C -0.055 4.055 14 S 2.708 3.292 15 O -0.971 6.971 16 O -0.992 6.992 17 C -0.708 4.708 18 H 0.165 0.835 19 C -0.153 4.153 20 C -0.081 4.081 21 N -0.309 5.309 22 C -0.060 4.060 23 H 0.035 0.965 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.174 0.826 35 H 0.091 0.909 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.836 -4.940 -7.688 13.426 hybrid contribution 0.627 -0.221 2.378 2.469 sum 10.463 -5.160 -5.311 12.818 Atomic orbital electron populations 1.21953 0.98142 1.00048 0.99830 1.18420 0.91947 0.91529 0.81432 0.95607 1.21645 1.31785 1.13163 0.90487 0.90870 1.25722 0.95216 0.95589 1.01921 1.70019 1.37348 1.24056 1.24401 0.85602 0.78780 0.78723 0.78446 1.19459 1.21670 1.19426 1.57222 1.64708 1.22436 1.38547 1.21522 1.02362 0.80369 1.01197 1.04747 0.77503 0.73119 0.73788 1.93494 1.84898 1.75452 1.43219 1.93509 1.82469 1.36349 1.86843 1.31318 1.21730 1.05917 1.11816 0.83539 1.22519 0.95235 1.00342 0.97200 1.23105 0.94585 0.87281 1.03137 1.63041 1.11501 1.06915 1.49451 1.22269 0.97043 0.89853 0.96877 0.96528 0.93567 0.91125 0.92734 0.91792 0.90835 0.90563 0.90945 0.87453 0.91729 0.87437 0.82585 0.90859 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.82 8.95 71.98 0.64 -6.18 16 2 C 0.27 13.29 2.57 44.24 0.11 13.41 16 3 H 0.03 1.44 6.87 -2.38 -0.02 1.43 16 4 C -0.53 -26.44 8.37 25.60 0.21 -26.23 16 5 H 0.07 3.40 7.65 -2.91 -0.02 3.38 16 6 C 0.02 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -50.77 11.32 21.45 0.24 -50.53 16 8 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 9 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.99 -40.60 2.97 -520.45 -1.55 -42.15 16 13 C 0.09 3.10 8.80 127.77 1.12 4.23 16 14 S 2.61 101.97 4.57 -56.49 -0.26 101.71 16 15 O -0.98 -39.97 16.25 -127.65 -2.07 -42.04 16 16 O -1.00 -47.01 16.57 -127.65 -2.12 -49.12 16 17 C -0.60 -17.85 3.71 31.47 0.12 -17.73 16 18 H 0.15 4.40 8.14 -2.39 -0.02 4.38 16 19 C -0.11 -2.79 6.64 31.86 0.21 -2.58 16 20 C 0.05 0.93 7.55 86.71 0.65 1.58 16 21 N -0.68 -14.98 7.51 -501.91 -3.77 -18.75 16 22 C 0.07 1.83 7.13 86.45 0.62 2.45 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 2.06 6.66 -2.39 -0.02 2.05 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.74 16 26 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.06 1.90 7.47 -2.39 -0.02 1.88 16 28 H 0.07 2.53 6.43 -2.38 -0.02 2.52 16 29 H 0.08 2.42 6.91 -2.38 -0.02 2.40 16 30 H 0.07 1.85 7.82 -2.38 -0.02 1.83 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.36 5.88 8.92 -89.70 -0.80 5.08 16 35 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.08 2.21 5.52 -2.38 -0.01 2.20 16 Total: -1.00 -66.00 296.54 -3.07 -69.07 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.28 Total: 19.14 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 4.14 Total: -29.82 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -5.07 Total: -111.43 kcal Atomic # 8 Polarization: -86.98 SS G_CDS: -4.19 Total: -91.17 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 101.97 SS G_CDS: -0.26 Total: 101.71 kcal Total: -66.00 -3.07 -69.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254780.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.237 kcal (2) G-P(sol) polarization free energy of solvation -66.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds