Wall clock time and date at job start Mon Mar 30 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47251 * 2 1 4 4 C 1.50702 * 109.46861 * 120.00251 * 2 1 3 5 5 H 1.07994 * 120.00187 * 120.00017 * 4 2 1 6 6 C 1.37879 * 120.00033 * 300.00028 * 4 2 1 7 7 N 1.31522 * 119.99787 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00370 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.46951 * 119.99547 * 8 6 4 11 11 H 1.48494 * 109.47536 * 239.99850 * 8 6 4 12 12 N 1.46499 * 109.47216 * 239.99938 * 2 1 3 13 13 C 1.46506 * 119.99936 * 300.00087 * 12 2 1 14 14 S 1.65597 * 119.99926 * 120.28047 * 12 2 1 15 15 O 1.42097 * 104.27740 * 25.79347 * 14 12 2 16 16 O 1.42099 * 104.27794 * 153.65377 * 14 12 2 17 17 C 1.81405 * 104.44719 * 269.72273 * 14 12 2 18 18 H 1.09001 * 110.28293 * 62.87553 * 17 14 12 19 19 C 1.54257 * 110.32224 * 184.99945 * 17 14 12 20 20 C 1.54377 * 105.06293 * 118.89749 * 19 17 14 21 21 N 1.48571 * 104.59276 * 23.85035 * 20 19 17 22 22 C 1.48557 * 104.21823 * 320.51937 * 21 20 19 23 23 H 1.08996 * 109.47401 * 300.00301 * 1 2 3 24 24 H 1.09002 * 109.46768 * 60.00184 * 1 2 3 25 25 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99632 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 28 28 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 29 29 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 30 30 H 1.08997 * 110.32649 * 237.79400 * 19 17 14 31 31 H 1.09002 * 110.32982 * 359.97438 * 19 17 14 32 32 H 1.08997 * 110.41915 * 142.62919 * 20 19 17 33 33 H 1.09005 * 110.41100 * 264.95832 * 20 19 17 34 34 H 1.00898 * 111.00049 * 200.96027 * 21 20 19 35 35 H 1.08994 * 110.41371 * 280.69870 * 22 21 20 36 36 H 1.09002 * 110.40695 * 158.26228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9426 0.8296 2.6034 8 14 2.3211 -1.1205 4.0080 9 1 3.1462 -2.2871 3.6039 10 1 3.1464 -0.1875 4.8166 11 1 1.1658 -1.5867 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9761 0.1121 -2.2827 15 8 3.6035 1.1285 -1.5128 16 8 3.7394 -0.9140 -2.9021 17 6 1.8081 0.8388 -3.4652 18 1 1.1591 1.5562 -2.9630 19 6 2.5698 1.5219 -4.6196 20 6 2.1262 0.7706 -5.8931 21 7 0.8052 0.1877 -5.5428 22 6 0.9683 -0.2680 -4.1383 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7086 1.1611 3.4844 27 1 0.7376 -2.1444 -1.9994 28 1 2.4629 -2.5819 -1.9864 29 1 1.5294 -2.5969 -0.4708 30 1 2.2933 2.5742 -4.6852 31 1 3.6456 1.4211 -4.4755 32 1 2.0264 1.4638 -6.7283 33 1 2.8387 -0.0175 -6.1372 34 1 0.5788 -0.5857 -6.1500 35 1 1.4984 -1.2198 -4.1066 36 1 -0.0033 -0.3566 -3.6522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687254782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:11 Heat of formation + Delta-G solvation = -62.530980 kcal Electronic energy + Delta-G solvation = -19281.102059 eV Core-core repulsion = 16313.639309 eV Total energy + Delta-G solvation = -2967.462751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.38950 -36.60942 -36.20993 -35.38169 -32.59809 -30.64164 -29.26297 -28.90100 -25.54444 -25.18000 -21.98563 -21.45846 -20.51485 -18.27212 -17.37133 -16.98697 -16.30184 -16.17923 -15.20838 -14.76447 -14.59113 -13.91448 -13.50082 -13.20742 -12.88943 -12.70294 -12.43592 -12.05678 -11.93393 -11.79903 -11.74118 -11.56776 -11.37060 -11.23370 -11.19035 -10.91234 -10.82442 -10.49385 -10.22556 -10.14810 -9.96686 -9.26592 -8.80167 -8.45441 -7.94048 -6.07444 -4.13534 0.74920 3.26030 3.28132 3.36462 3.41293 4.06535 4.22916 4.28281 4.39558 4.48427 4.88039 4.93014 5.09024 5.24475 5.30657 5.43076 5.50274 5.66401 5.70862 5.82698 5.86682 6.07108 6.32281 6.43207 6.65292 6.76655 6.81948 7.01297 7.09945 7.42183 7.62090 7.78812 8.04372 8.27239 8.88603 9.51928 10.98447 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.006387 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.328891 B = 4382.729145 C = 4492.632563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.265 3.735 3 H 0.060 0.940 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.979 5.979 13 C 0.094 3.906 14 S 2.607 3.393 15 O -0.946 6.946 16 O -0.971 6.971 17 C -0.611 4.611 18 H 0.143 0.857 19 C -0.098 4.098 20 C 0.034 3.966 21 N -0.659 5.659 22 C 0.065 3.935 23 H 0.093 0.907 24 H 0.010 0.990 25 H 0.034 0.966 26 H 0.263 0.737 27 H 0.037 0.963 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.339 0.661 35 H 0.054 0.946 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -1.731 -13.722 13.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.163 3.837 3 H 0.078 0.922 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.819 5.819 13 C -0.053 4.053 14 S 2.698 3.302 15 O -0.936 6.936 16 O -0.961 6.961 17 C -0.718 4.718 18 H 0.161 0.839 19 C -0.137 4.137 20 C -0.096 4.096 21 N -0.288 5.288 22 C -0.065 4.065 23 H 0.112 0.888 24 H 0.029 0.971 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.072 0.928 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.732 -0.920 -13.448 13.499 hybrid contribution 0.113 -1.006 0.636 1.196 sum -0.619 -1.926 -12.811 12.970 Atomic orbital electron populations 1.22144 0.98205 0.99889 1.00621 1.18782 0.91209 0.93230 0.80519 0.92234 1.21353 1.31419 1.12957 0.89941 0.91827 1.24913 0.94981 0.95040 0.99019 1.69870 1.36622 1.22770 1.23688 0.86434 0.78581 0.79670 0.82677 1.19733 1.20895 1.20994 1.57344 1.70162 1.19518 1.34846 1.21367 0.98652 0.82375 1.02881 1.05165 0.75789 0.74721 0.74573 1.93602 1.72822 1.60682 1.66529 1.93501 1.67726 1.56002 1.78875 1.31652 1.16127 1.09918 1.14137 0.83877 1.21981 0.98202 1.01236 0.92302 1.22951 0.90423 0.98586 0.97632 1.63738 1.28749 1.33460 1.02878 1.22575 1.00226 0.93801 0.89865 0.88832 0.97126 0.94685 0.92745 0.94441 0.91772 0.89668 0.89151 0.91392 0.89482 0.93271 0.84540 0.92803 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.27 6.41 2.57 -69.08 -0.18 6.23 16 3 H 0.06 1.59 6.87 -51.93 -0.36 1.24 16 4 C -0.52 -13.86 7.99 -34.44 -0.28 -14.13 16 5 H 0.06 1.70 7.33 -52.49 -0.38 1.32 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.71 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 12 N -0.98 -19.87 2.90 -115.85 -0.34 -20.21 16 13 C 0.09 1.61 9.01 59.85 0.54 2.15 16 14 S 2.61 49.65 4.57 -107.50 -0.49 49.16 16 15 O -0.95 -21.87 16.56 -57.54 -0.95 -22.83 16 16 O -0.97 -19.34 16.13 -57.54 -0.93 -20.27 16 17 C -0.61 -8.99 3.79 -25.35 -0.10 -9.08 16 18 H 0.14 2.06 8.14 -51.93 -0.42 1.64 16 19 C -0.10 -1.24 6.67 -25.35 -0.17 -1.41 16 20 C 0.03 0.37 7.47 -2.18 -0.02 0.35 16 21 N -0.66 -7.58 7.62 -109.66 -0.84 -8.42 16 22 C 0.07 0.85 6.45 -2.19 -0.01 0.83 16 23 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 24 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 27 H 0.04 0.53 7.94 -51.93 -0.41 0.12 16 28 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 29 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.84 7.64 -51.93 -0.40 0.44 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.34 3.10 8.92 -39.29 -0.35 2.75 16 35 H 0.05 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -31.85 298.84 -8.78 -40.64 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.38 Total: 1.87 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 0.03 Total: -16.43 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.55 Total: -52.71 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.88 Total: -43.10 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 49.65 SS G_CDS: -0.49 Total: 49.16 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.85 -8.78 -40.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.894 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds