Wall clock time and date at job start Mon Mar 30 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47251 * 2 1 4 4 C 1.50702 * 109.46861 * 120.00251 * 2 1 3 5 5 H 1.07994 * 120.00187 * 120.00017 * 4 2 1 6 6 C 1.37879 * 120.00033 * 300.00028 * 4 2 1 7 7 N 1.31522 * 119.99787 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00370 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47212 * 0.02562 * 8 6 4 10 10 H 1.48510 * 109.46951 * 119.99547 * 8 6 4 11 11 H 1.48494 * 109.47536 * 239.99850 * 8 6 4 12 12 N 1.46499 * 109.47216 * 239.99938 * 2 1 3 13 13 C 1.46506 * 119.99936 * 300.00087 * 12 2 1 14 14 S 1.65597 * 119.99926 * 120.28047 * 12 2 1 15 15 O 1.42097 * 104.27740 * 25.79347 * 14 12 2 16 16 O 1.42099 * 104.27794 * 153.65377 * 14 12 2 17 17 C 1.81405 * 104.44719 * 269.72273 * 14 12 2 18 18 H 1.09001 * 110.28293 * 62.87553 * 17 14 12 19 19 C 1.54257 * 110.32224 * 184.99945 * 17 14 12 20 20 C 1.54377 * 105.06293 * 118.89749 * 19 17 14 21 21 N 1.48571 * 104.59276 * 23.85035 * 20 19 17 22 22 C 1.48557 * 104.21823 * 320.51937 * 21 20 19 23 23 H 1.08996 * 109.47401 * 300.00301 * 1 2 3 24 24 H 1.09002 * 109.46768 * 60.00184 * 1 2 3 25 25 H 1.08996 * 109.46989 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99632 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.46892 * 90.00398 * 13 12 2 28 28 H 1.09000 * 109.46803 * 209.99571 * 13 12 2 29 29 H 1.09000 * 109.47214 * 330.00364 * 13 12 2 30 30 H 1.08997 * 110.32649 * 237.79400 * 19 17 14 31 31 H 1.09002 * 110.32982 * 359.97438 * 19 17 14 32 32 H 1.08997 * 110.41915 * 142.62919 * 20 19 17 33 33 H 1.09005 * 110.41100 * 264.95832 * 20 19 17 34 34 H 1.00898 * 111.00049 * 200.96027 * 21 20 19 35 35 H 1.08994 * 110.41371 * 280.69870 * 22 21 20 36 36 H 1.09002 * 110.40695 * 158.26228 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2395 2.4828 7 7 0.9426 0.8296 2.6034 8 14 2.3211 -1.1205 4.0080 9 1 3.1462 -2.2871 3.6039 10 1 3.1464 -0.1875 4.8166 11 1 1.1658 -1.5867 4.8161 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 16 2.9761 0.1121 -2.2827 15 8 3.6035 1.1285 -1.5128 16 8 3.7394 -0.9140 -2.9021 17 6 1.8081 0.8388 -3.4652 18 1 1.1591 1.5562 -2.9630 19 6 2.5698 1.5219 -4.6196 20 6 2.1262 0.7706 -5.8931 21 7 0.8052 0.1877 -5.5428 22 6 0.9683 -0.2680 -4.1383 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7086 1.1611 3.4844 27 1 0.7376 -2.1444 -1.9994 28 1 2.4629 -2.5819 -1.9864 29 1 1.5294 -2.5969 -0.4708 30 1 2.2933 2.5742 -4.6852 31 1 3.6456 1.4211 -4.4755 32 1 2.0264 1.4638 -6.7283 33 1 2.8387 -0.0175 -6.1372 34 1 0.5788 -0.5857 -6.1500 35 1 1.4984 -1.2198 -4.1066 36 1 -0.0033 -0.3566 -3.6522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687254782.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:10 Heat of formation + Delta-G solvation = -87.890714 kcal Electronic energy + Delta-G solvation = -19282.201740 eV Core-core repulsion = 16313.639309 eV Total energy + Delta-G solvation = -2968.562431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38923 -38.21305 -37.88933 -36.99964 -34.53004 -31.66912 -30.94519 -29.98711 -27.22317 -27.00709 -22.98580 -22.83044 -21.99546 -19.76331 -18.75333 -18.57831 -18.00618 -17.47514 -16.80267 -16.32727 -15.92880 -15.24503 -14.89269 -14.81189 -14.34694 -13.96180 -13.77329 -13.47830 -13.36643 -13.19965 -13.13270 -13.01961 -12.89497 -12.76007 -12.68780 -12.57272 -12.28081 -12.19464 -12.11936 -11.89995 -11.35756 -11.14104 -10.49833 -9.69243 -9.55055 -8.11659 -6.24564 -0.72471 1.40795 1.43686 1.53962 1.76197 2.43865 2.85424 2.98288 3.16749 3.26109 3.33227 3.60695 3.92422 4.11176 4.14220 4.26435 4.51620 4.57238 4.72876 4.77620 4.79505 4.86427 4.95089 5.02844 5.06373 5.16981 5.27674 5.52152 5.62118 5.73275 5.89425 6.16173 6.31659 6.34893 6.82978 7.43932 8.92688 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036866 B = 0.006387 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.328891 B = 4382.729145 C = 4492.632563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.025 0.975 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.990 5.990 13 C 0.089 3.911 14 S 2.603 3.397 15 O -0.999 6.999 16 O -0.986 6.986 17 C -0.585 4.585 18 H 0.150 0.850 19 C -0.110 4.110 20 C 0.034 3.966 21 N -0.659 5.659 22 C 0.062 3.938 23 H 0.065 0.935 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.355 0.645 35 H 0.058 0.942 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -2.305 -15.501 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.043 0.957 4 C -0.576 4.576 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.828 5.828 13 C -0.057 4.057 14 S 2.700 3.300 15 O -0.990 6.990 16 O -0.976 6.976 17 C -0.698 4.698 18 H 0.168 0.832 19 C -0.150 4.150 20 C -0.096 4.096 21 N -0.290 5.290 22 C -0.068 4.068 23 H 0.084 0.916 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.076 0.924 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.705 -1.547 -15.202 15.375 hybrid contribution 0.444 -0.801 1.057 1.399 sum -1.261 -2.348 -14.145 14.394 Atomic orbital electron populations 1.21936 0.96565 1.00470 1.00651 1.18433 0.92309 0.91476 0.81193 0.95689 1.21679 1.31392 1.12918 0.91576 0.92726 1.25632 0.95275 0.95766 1.01637 1.69981 1.37379 1.23723 1.24274 0.85555 0.78282 0.78552 0.79518 1.19567 1.21068 1.19835 1.57171 1.70114 1.20844 1.34685 1.21542 1.00663 0.80702 1.02750 1.05012 0.76161 0.73948 0.74835 1.93535 1.74921 1.61823 1.68696 1.93470 1.68863 1.56509 1.78800 1.31297 1.14759 1.10543 1.13158 0.83245 1.22234 0.98072 1.02458 0.92241 1.23048 0.90256 0.99063 0.97205 1.63743 1.28946 1.34187 1.02172 1.22666 1.00258 0.93034 0.90875 0.91595 0.94219 0.93697 0.92640 0.90811 0.91039 0.91179 0.87442 0.91474 0.87101 0.92668 0.82763 0.92383 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.97 71.98 0.65 -5.35 16 2 C 0.27 13.23 2.57 44.25 0.11 13.35 16 3 H 0.03 1.40 6.87 -2.39 -0.02 1.38 16 4 C -0.54 -29.29 7.99 25.60 0.20 -29.09 16 5 H 0.05 2.99 7.33 -2.91 -0.02 2.97 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.91 -51.56 11.32 21.45 0.24 -51.32 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.99 -39.97 2.90 -520.43 -1.51 -41.48 16 13 C 0.09 2.96 9.01 127.77 1.15 4.11 16 14 S 2.60 98.97 4.57 -56.49 -0.26 98.71 16 15 O -1.00 -47.80 16.56 -127.65 -2.11 -49.91 16 16 O -0.99 -38.91 16.13 -127.65 -2.06 -40.97 16 17 C -0.58 -16.00 3.79 31.49 0.12 -15.88 16 18 H 0.15 4.00 8.14 -2.39 -0.02 3.98 16 19 C -0.11 -2.53 6.67 31.49 0.21 -2.32 16 20 C 0.03 0.62 7.47 86.45 0.65 1.26 16 21 N -0.66 -12.62 7.62 -500.85 -3.82 -16.44 16 22 C 0.06 1.41 6.45 86.45 0.56 1.97 16 23 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 24 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.83 7.67 -2.39 -0.02 1.81 16 26 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.07 1.90 7.94 -2.39 -0.02 1.88 16 28 H 0.07 2.25 6.90 -2.39 -0.02 2.23 16 29 H 0.07 2.53 7.02 -2.39 -0.02 2.52 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.55 7.64 -2.39 -0.02 1.53 16 32 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.35 5.07 8.92 -89.70 -0.80 4.27 16 35 H 0.06 1.29 7.13 -2.39 -0.02 1.27 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.49 298.84 -3.12 -72.61 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.28 Total: 13.71 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.10 Total: -30.59 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -5.09 Total: -109.24 kcal Atomic # 8 Polarization: -86.71 SS G_CDS: -4.17 Total: -90.88 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 98.97 SS G_CDS: -0.26 Total: 98.71 kcal Total: -69.49 -3.12 -72.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254782.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.281 kcal (2) G-P(sol) polarization free energy of solvation -69.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds