Wall clock time and date at job start Mon Mar 30 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47028 * 2 1 4 4 C 1.50699 * 109.46921 * 240.00177 * 2 1 3 5 5 H 1.08003 * 119.99892 * 240.00226 * 4 2 1 6 6 C 1.37884 * 120.00047 * 60.00046 * 4 2 1 7 7 N 1.31506 * 119.99729 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47302 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47406 * 120.00003 * 8 6 4 11 11 H 1.48496 * 109.46913 * 240.00095 * 8 6 4 12 12 N 1.46505 * 109.47123 * 120.00336 * 2 1 3 13 13 C 1.46496 * 119.99988 * 59.99957 * 12 2 1 14 14 S 1.65602 * 119.99731 * 239.99601 * 12 2 1 15 15 O 1.42102 * 104.27143 * 153.92931 * 14 12 2 16 16 O 1.42101 * 104.27588 * 26.07478 * 14 12 2 17 17 C 1.81398 * 104.45067 * 270.00006 * 14 12 2 18 18 H 1.08998 * 110.90364 * 297.59415 * 17 14 12 19 19 C 1.55422 * 111.10455 * 173.62927 * 17 14 12 20 20 C 1.54321 * 103.04810 * 206.29715 * 19 17 14 21 21 N 1.47448 * 107.23159 * 22.28093 * 20 19 17 22 22 C 1.47846 * 108.56553 * 0.99350 * 21 20 19 23 23 H 1.09005 * 109.47495 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47117 * 300.00099 * 1 2 3 25 25 H 1.08996 * 109.47425 * 59.99365 * 1 2 3 26 26 H 0.97005 * 120.00191 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46748 * 269.99891 * 13 12 2 28 28 H 1.09000 * 109.47345 * 29.99443 * 13 12 2 29 29 H 1.08999 * 109.47124 * 149.99983 * 13 12 2 30 30 H 1.09004 * 110.69757 * 87.90589 * 19 17 14 31 31 H 1.09005 * 110.84788 * 324.75470 * 19 17 14 32 32 H 1.08999 * 109.88748 * 262.87827 * 20 19 17 33 33 H 1.08997 * 110.02694 * 141.76299 * 20 19 17 34 34 H 1.00901 * 110.99720 * 238.72291 * 21 20 19 35 35 H 1.09002 * 110.37464 * 94.73346 * 22 21 20 36 36 H 1.08999 * 110.37318 * 216.96123 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1463 -2.2870 -3.6039 10 1 1.1659 -1.5865 -4.8162 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 2.7432 -0.5614 3.5156 16 8 2.6122 1.4795 2.1234 17 6 4.6649 -0.1731 1.7058 18 1 4.9095 -1.2350 1.7297 19 6 5.6879 0.6530 2.5345 20 6 6.8632 0.8389 1.5518 21 7 6.3247 0.6692 0.1897 22 6 4.8720 0.4121 0.2865 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.7080 1.1610 -3.4844 27 1 0.7375 -2.1444 1.9993 28 1 1.5294 -2.5969 0.4707 29 1 2.4628 -2.5820 1.9862 30 1 6.0072 0.0977 3.4165 31 1 5.2676 1.6176 2.8194 32 1 7.6294 0.0879 1.7438 33 1 7.2869 1.8372 1.6613 34 1 6.7936 -0.0823 -0.2934 35 1 4.3137 1.3415 0.1741 36 1 4.5630 -0.3091 -0.4701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687254783.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:14 Heat of formation + Delta-G solvation = -88.584083 kcal Electronic energy + Delta-G solvation = -19499.616657 eV Core-core repulsion = 16531.024159 eV Total energy + Delta-G solvation = -2968.592498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.36427 -38.20574 -37.88160 -36.99314 -34.46982 -31.40585 -30.90100 -30.02511 -27.20806 -26.96358 -23.17510 -22.53517 -22.11717 -19.73013 -18.56821 -18.37938 -17.90460 -17.65511 -17.06266 -16.38250 -15.28110 -15.19489 -14.82788 -14.70870 -14.43658 -14.42159 -13.70439 -13.51955 -13.40474 -13.23131 -13.16157 -12.95462 -12.72243 -12.66635 -12.54651 -12.47882 -12.12775 -12.09215 -12.03131 -11.90667 -11.59288 -11.05385 -10.46016 -9.59334 -9.50476 -8.04654 -6.18743 -0.68185 1.47313 1.50739 1.59150 1.77441 2.48013 2.80951 3.03097 3.23608 3.28271 3.30837 3.80782 3.88001 4.11308 4.26757 4.31236 4.54730 4.69410 4.73946 4.82570 4.87963 4.97562 5.00807 5.01977 5.06123 5.19229 5.29698 5.64533 5.72868 5.77101 5.89141 6.12691 6.32776 6.48519 6.90724 7.50777 9.00319 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.009514 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.977008 B = 2942.378486 C = 3803.665047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.029 0.971 4 C -0.521 4.521 5 H 0.075 0.925 6 C 0.019 3.981 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.259 1.259 10 H -0.288 1.288 11 H -0.288 1.288 12 N -0.992 5.992 13 C 0.098 3.902 14 S 2.614 3.386 15 O -0.990 6.990 16 O -0.994 6.994 17 C -0.612 4.612 18 H 0.164 0.836 19 C -0.128 4.128 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.081 3.919 23 H 0.043 0.957 24 H 0.013 0.987 25 H 0.069 0.931 26 H 0.262 0.738 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.352 0.648 35 H 0.060 0.940 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -5.458 6.651 13.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.046 0.954 4 C -0.560 4.560 5 H 0.093 0.907 6 C -0.181 4.181 7 N -0.557 5.557 8 Si 0.780 3.220 9 H -0.183 1.183 10 H -0.215 1.215 11 H -0.214 1.214 12 N -0.830 5.830 13 C -0.047 4.047 14 S 2.711 3.289 15 O -0.980 6.980 16 O -0.985 6.985 17 C -0.725 4.725 18 H 0.182 0.818 19 C -0.167 4.167 20 C -0.075 4.075 21 N -0.317 5.317 22 C -0.050 4.050 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.699 -4.178 7.133 12.744 hybrid contribution 0.094 -1.212 -1.050 1.606 sum 9.794 -5.390 6.083 12.727 Atomic orbital electron populations 1.21961 0.98475 0.99896 0.99677 1.18415 0.91604 0.91689 0.81306 0.95363 1.21603 1.31351 1.12927 0.90130 0.90661 1.25640 0.95239 0.95509 1.01714 1.70025 1.37470 1.24078 1.24109 0.85577 0.77926 0.78792 0.79707 1.18253 1.21467 1.21431 1.57279 1.64545 1.22413 1.38766 1.21405 1.00480 0.80505 1.02310 1.04562 0.77497 0.73285 0.73510 1.93495 1.85240 1.75664 1.43584 1.93520 1.82244 1.36088 1.86647 1.32116 1.21456 1.10973 1.07982 0.81845 1.22879 0.95113 0.99207 0.99541 1.22681 0.95827 1.03337 0.85620 1.61587 1.02512 1.49467 1.18130 1.22517 0.90506 0.99985 0.91965 0.93838 0.96797 0.91188 0.92903 0.93555 0.90119 0.90359 0.86644 0.90994 0.89536 0.89662 0.83117 0.92159 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.76 8.97 71.98 0.65 -6.11 16 2 C 0.27 13.04 2.46 44.24 0.11 13.15 16 3 H 0.03 1.54 6.87 -2.39 -0.02 1.53 16 4 C -0.52 -24.90 7.00 25.60 0.18 -24.72 16 5 H 0.08 3.35 7.33 -2.91 -0.02 3.33 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.92 -50.10 11.32 21.45 0.24 -49.86 16 8 Si 0.95 40.12 29.54 68.60 2.03 42.14 16 9 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 10 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.99 -39.29 2.97 -520.45 -1.54 -40.84 16 13 C 0.10 3.24 9.19 127.77 1.17 4.41 16 14 S 2.61 97.88 4.91 -56.49 -0.28 97.61 16 15 O -0.99 -38.61 17.09 -127.65 -2.18 -40.79 16 16 O -0.99 -45.50 16.15 -127.65 -2.06 -47.56 16 17 C -0.61 -17.32 3.79 32.08 0.12 -17.19 16 18 H 0.16 3.63 8.14 -2.39 -0.02 3.61 16 19 C -0.13 -3.00 6.43 31.88 0.21 -2.79 16 20 C 0.05 1.15 7.58 86.65 0.66 1.81 16 21 N -0.69 -18.32 7.39 -504.41 -3.73 -22.05 16 22 C 0.08 2.64 6.91 86.77 0.60 3.24 16 23 H 0.04 1.93 7.67 -2.38 -0.02 1.91 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 26 H 0.26 13.71 8.31 -92.70 -0.77 12.94 16 27 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 28 H 0.08 2.64 7.02 -2.39 -0.02 2.62 16 29 H 0.08 2.08 7.79 -2.39 -0.02 2.06 16 30 H 0.12 2.00 8.14 -2.38 -0.02 1.99 16 31 H 0.07 1.84 8.04 -2.38 -0.02 1.82 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.35 7.72 8.91 -89.69 -0.80 6.93 16 35 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16 36 H 0.09 3.19 7.12 -2.39 -0.02 3.17 16 Total: -1.00 -64.62 299.97 -3.11 -67.73 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.27 Total: 20.43 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 4.14 Total: -26.81 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -5.03 Total: -112.75 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -4.24 Total: -88.35 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 97.88 SS G_CDS: -0.28 Total: 97.61 kcal Total: -64.62 -3.11 -67.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687254783.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.855 kcal (2) G-P(sol) polarization free energy of solvation -64.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds