Wall clock time and date at job start Mon Mar 30 2020 04:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47485 * 2 1 4 4 H 1.09002 * 109.46826 * 179.74314 * 3 2 1 5 5 C 1.50705 * 109.47182 * 299.74080 * 3 2 1 6 6 H 1.07996 * 120.00014 * 114.58877 * 5 3 2 7 7 C 1.37880 * 119.99617 * 294.58933 * 5 3 2 8 8 N 1.31511 * 120.00427 * 347.80879 * 7 5 3 9 9 Si 1.86800 * 119.99647 * 167.53212 * 7 5 3 10 10 H 1.48505 * 109.46842 * 60.00189 * 9 7 5 11 11 H 1.48498 * 109.46938 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47485 * 300.00279 * 9 7 5 13 13 N 1.46495 * 109.47099 * 59.73966 * 3 2 1 14 14 S 1.65606 * 119.99787 * 95.83351 * 13 3 2 15 15 O 1.42098 * 104.27662 * 180.34465 * 14 13 3 16 16 O 1.42098 * 104.27760 * 308.19760 * 14 13 3 17 17 C 1.81399 * 104.44948 * 64.27360 * 14 13 3 18 18 H 1.08997 * 110.64497 * 303.14776 * 17 14 13 19 19 C 1.54594 * 110.72375 * 179.97438 * 17 14 13 20 20 C 1.53994 * 105.14341 * 219.68545 * 19 17 14 21 21 N 1.47909 * 107.05332 * 358.77261 * 20 19 17 22 22 C 1.48528 * 105.81987 * 25.33423 * 21 20 19 23 23 H 1.09006 * 109.46871 * 305.00141 * 1 2 3 24 24 H 1.08998 * 109.47056 * 64.99122 * 1 2 3 25 25 H 1.08992 * 109.47322 * 184.99374 * 1 2 3 26 26 H 1.09004 * 109.47040 * 239.99527 * 2 1 3 27 27 H 1.09006 * 109.46601 * 120.00392 * 2 1 3 28 28 H 0.97001 * 119.99433 * 1.02687 * 8 7 5 29 29 H 0.97002 * 120.00299 * 275.83116 * 13 3 2 30 30 H 1.09007 * 110.30859 * 338.60334 * 19 17 14 31 31 H 1.08997 * 110.31300 * 100.66462 * 19 17 14 32 32 H 1.08995 * 109.92052 * 118.12419 * 20 19 17 33 33 H 1.09000 * 109.91602 * 239.42625 * 20 19 17 34 34 H 1.00902 * 110.99231 * 145.84610 * 21 20 19 35 35 H 1.09003 * 110.66760 * 202.35597 * 22 21 20 36 36 H 1.08998 * 110.67134 * 79.22714 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4423 0.0046 5 6 1.5431 2.1510 -1.2337 6 1 0.8518 2.9756 -1.1412 7 6 1.9710 1.7466 -2.4805 8 7 2.9831 0.9141 -2.5903 9 14 1.1079 2.3750 -4.0133 10 1 1.2047 3.8560 -4.0638 11 1 1.7547 1.7959 -5.2181 12 1 -0.3212 1.9733 -3.9767 13 7 1.5467 2.1348 1.1930 14 16 2.4987 2.2367 2.5443 15 8 1.7044 2.9538 3.4792 16 8 2.8945 0.8954 2.7960 17 6 3.9216 3.2330 2.0215 18 1 4.4155 2.7770 1.1635 19 6 4.9164 3.4213 3.1898 20 6 5.3993 4.8791 3.0760 21 7 4.7356 5.4647 1.8910 22 6 3.4860 4.6848 1.7001 23 1 -0.3633 0.5895 0.8419 24 1 -0.3633 0.4344 -0.9313 25 1 -0.3633 -1.0237 0.0894 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.4191 0.5730 -1.7938 29 1 0.6625 2.5337 1.1914 30 1 4.4138 3.2626 4.1439 31 1 5.7559 2.7339 3.0863 32 1 5.1186 5.4342 3.9710 33 1 6.4812 4.9027 2.9451 34 1 4.5330 6.4424 2.0364 35 1 3.1374 4.7627 0.6702 36 1 2.7148 5.0177 2.3946 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687255012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:59 Heat of formation + Delta-G solvation = -105.397264 kcal Electronic energy + Delta-G solvation = -19181.538072 eV Core-core repulsion = 16212.216500 eV Total energy + Delta-G solvation = -2969.321572 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.40219 -38.44736 -37.92011 -37.10785 -34.16553 -32.23576 -31.71377 -30.04117 -27.77355 -25.60249 -23.13833 -22.44025 -21.98785 -20.08368 -19.42492 -18.78816 -18.24016 -17.19925 -16.70417 -15.93653 -15.73770 -15.46430 -15.19737 -14.92691 -14.82931 -14.46435 -14.16312 -13.48654 -13.32270 -13.25399 -13.18296 -12.99150 -12.87450 -12.69880 -12.59124 -12.30802 -12.12730 -12.05340 -11.91706 -11.75752 -11.64367 -10.87189 -10.32326 -10.03221 -9.59943 -8.53948 -6.24999 -0.76446 1.60796 1.66369 1.75906 1.84811 2.60590 2.67185 2.92176 3.20409 3.24640 3.32036 3.59675 3.85111 4.07207 4.19392 4.25489 4.43112 4.48464 4.57533 4.59707 4.68955 4.71103 4.79817 4.97439 5.08169 5.24849 5.36402 5.51820 5.57788 5.59029 5.92635 6.25750 6.35098 6.42186 6.65540 7.50209 8.83396 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.007929 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.848547 B = 3530.441961 C = 4289.050423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.138 4.138 3 C 0.273 3.727 4 H 0.014 0.986 5 C -0.600 4.600 6 H 0.063 0.937 7 C -0.016 4.016 8 N -0.930 5.930 9 Si 1.104 2.896 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.272 1.272 13 N -1.095 6.095 14 S 2.624 3.376 15 O -0.986 6.986 16 O -0.992 6.992 17 C -0.589 4.589 18 H 0.137 0.863 19 C -0.117 4.117 20 C 0.044 3.956 21 N -0.673 5.673 22 C 0.065 3.935 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.260 0.740 29 H 0.416 0.584 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.355 0.645 35 H 0.093 0.907 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 7.668 9.106 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.178 4.178 3 C 0.166 3.834 4 H 0.032 0.968 5 C -0.639 4.639 6 H 0.081 0.919 7 C -0.217 4.217 8 N -0.567 5.567 9 Si 0.928 3.072 10 H -0.198 1.198 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.854 5.854 14 S 2.719 3.281 15 O -0.976 6.976 16 O -0.982 6.982 17 C -0.701 4.701 18 H 0.155 0.845 19 C -0.157 4.157 20 C -0.086 4.086 21 N -0.305 5.305 22 C -0.065 4.065 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.251 0.749 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.112 0.888 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.772 6.784 7.804 10.491 hybrid contribution -0.395 0.440 1.735 1.833 sum 1.377 7.224 9.539 12.044 Atomic orbital electron populations 1.21462 0.94947 1.00071 1.01585 1.21977 0.97914 0.98716 0.99179 1.18354 0.92550 0.89114 0.83344 0.96794 1.22200 1.30877 1.18969 0.91829 0.91910 1.26867 0.95158 0.95426 1.04224 1.70926 1.19997 1.32766 1.32966 0.83073 0.75428 0.76229 0.72485 1.19755 1.21837 1.19743 1.55207 1.29255 1.70696 1.30260 1.04328 0.75928 0.74641 0.73210 1.93509 1.67071 1.75577 1.61490 1.93536 1.84639 1.35366 1.84685 1.31398 1.17568 1.11207 1.09950 0.84463 1.22380 0.98641 1.00359 0.94315 1.22724 1.01004 0.92408 0.92466 1.63050 1.20644 1.07512 1.39257 1.22704 0.92910 0.87808 1.03064 0.92977 0.92923 0.93408 0.93555 0.94257 0.92932 0.74914 0.90252 0.87956 0.91308 0.88421 0.82768 0.88849 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 9.49 71.98 0.68 -4.26 16 2 C -0.14 -6.30 5.62 30.59 0.17 -6.13 16 3 C 0.27 12.41 1.99 44.25 0.09 12.50 16 4 H 0.01 0.70 6.32 -2.39 -0.02 0.68 16 5 C -0.60 -29.34 7.52 25.60 0.19 -29.15 16 6 H 0.06 2.98 7.84 -2.91 -0.02 2.95 16 7 C -0.02 -0.84 5.16 84.66 0.44 -0.40 16 8 N -0.93 -52.25 13.03 21.45 0.28 -51.97 16 9 Si 1.10 46.51 29.92 68.60 2.05 48.56 16 10 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 N -1.10 -41.93 4.64 -172.53 -0.80 -42.73 16 14 S 2.62 93.05 4.79 -56.49 -0.27 92.78 16 15 O -0.99 -36.42 17.47 -127.65 -2.23 -38.65 16 16 O -0.99 -41.55 17.22 -127.65 -2.20 -43.75 16 17 C -0.59 -17.84 3.56 31.80 0.11 -17.73 16 18 H 0.14 4.55 7.40 -2.39 -0.02 4.54 16 19 C -0.12 -2.83 6.53 31.47 0.21 -2.62 16 20 C 0.04 0.88 7.52 86.44 0.65 1.53 16 21 N -0.67 -16.01 7.51 -502.19 -3.77 -19.78 16 22 C 0.07 1.82 7.00 86.65 0.61 2.42 16 23 H 0.05 1.92 7.18 -2.38 -0.02 1.90 16 24 H 0.05 2.20 7.41 -2.39 -0.02 2.18 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.05 2.30 6.64 -2.38 -0.02 2.29 16 27 H 0.04 1.78 7.52 -2.38 -0.02 1.76 16 28 H 0.26 14.76 6.26 -92.71 -0.58 14.18 16 29 H 0.42 14.68 8.41 -96.74 -0.81 13.87 16 30 H 0.08 1.74 7.81 -2.38 -0.02 1.72 16 31 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.35 6.56 8.92 -89.69 -0.80 5.76 16 35 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 1.69 7.53 -2.39 -0.02 1.68 16 Total: -1.00 -64.32 300.22 -4.12 -68.44 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: -0.33 Total: 30.93 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 3.15 Total: -43.83 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -4.29 Total: -114.48 kcal Atomic # 8 Polarization: -77.97 SS G_CDS: -4.43 Total: -82.39 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.05 Total: 48.56 kcal Atomic # 16 Polarization: 93.05 SS G_CDS: -0.27 Total: 92.78 kcal Total: -64.32 -4.12 -68.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687255012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.957 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds