Wall clock time and date at job start Mon Mar 30 2020 04:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46823 * 2 1 4 4 H 1.08995 * 109.47466 * 303.39331 * 3 2 1 5 5 C 1.50700 * 109.46580 * 183.39518 * 3 2 1 6 6 H 1.08005 * 119.99820 * 245.48582 * 5 3 2 7 7 C 1.37870 * 120.00258 * 65.49076 * 5 3 2 8 8 N 1.31517 * 120.00166 * 193.76727 * 7 5 3 9 9 Si 1.86799 * 119.99956 * 13.76187 * 7 5 3 10 10 H 1.48505 * 109.47068 * 84.62148 * 9 7 5 11 11 H 1.48500 * 109.47316 * 204.61739 * 9 7 5 12 12 H 1.48495 * 109.47085 * 324.62071 * 9 7 5 13 13 N 1.46501 * 109.47053 * 63.39688 * 3 2 1 14 14 S 1.65600 * 119.99804 * 213.84188 * 13 3 2 15 15 O 1.42104 * 104.27367 * 180.31557 * 14 13 3 16 16 O 1.42096 * 104.27697 * 308.17369 * 14 13 3 17 17 C 1.81397 * 104.44753 * 64.24741 * 14 13 3 18 18 H 1.08998 * 110.27264 * 299.16893 * 17 14 13 19 19 C 1.54601 * 110.31085 * 176.97528 * 17 14 13 20 20 C 1.54931 * 102.92132 * 219.12529 * 19 17 14 21 21 N 1.48531 * 103.22989 * 37.41389 * 20 19 17 22 22 C 1.47902 * 105.81849 * 320.79127 * 21 20 19 23 23 H 1.08997 * 109.47326 * 304.25192 * 1 2 3 24 24 H 1.09003 * 109.47169 * 64.25392 * 1 2 3 25 25 H 1.09006 * 109.47196 * 184.25170 * 1 2 3 26 26 H 1.08997 * 109.47002 * 239.99818 * 2 1 3 27 27 H 1.09004 * 109.46697 * 119.99859 * 2 1 3 28 28 H 0.96999 * 119.99784 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00098 * 33.57154 * 13 3 2 30 30 H 1.09008 * 110.71933 * 337.48332 * 19 17 14 31 31 H 1.08997 * 110.72539 * 100.76469 * 19 17 14 32 32 H 1.08997 * 110.67143 * 278.97548 * 20 19 17 33 33 H 1.09002 * 110.66818 * 155.84417 * 20 19 17 34 34 H 1.00900 * 111.00426 * 200.28051 * 21 20 19 35 35 H 1.08997 * 109.91642 * 265.97905 * 22 21 20 36 36 H 1.08996 * 109.91818 * 144.68475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0841 6 1 4.1315 1.8148 0.7429 7 6 4.1720 0.9699 -1.2169 8 7 5.4621 0.7152 -1.1963 9 14 3.1895 0.6899 -2.7808 10 1 3.0850 1.9652 -3.5346 11 1 3.8738 -0.3263 -3.6200 12 1 1.8290 0.2086 -2.4312 13 7 1.6195 2.1091 1.2350 14 16 1.2506 3.7234 1.2203 15 8 0.9006 4.0150 2.5663 16 8 2.3773 4.3348 0.6073 17 6 -0.2042 3.8453 0.1436 18 1 0.0375 3.4930 -0.8592 19 6 -0.7142 5.3039 0.0938 20 6 -2.2540 5.1330 0.1014 21 7 -2.4641 3.9851 1.0203 22 6 -1.3724 3.0306 0.7291 23 1 -0.3634 0.5784 0.8494 24 1 -0.3634 0.4464 -0.9257 25 1 -0.3634 -1.0249 0.0762 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.9034 0.3818 -1.9932 29 1 1.5535 1.6040 2.0605 30 1 -0.3832 5.8584 0.9720 31 1 -0.3853 5.7965 -0.8212 32 1 -2.6200 4.8977 -0.8980 33 1 -2.7387 6.0293 0.4886 34 1 -3.3663 3.5600 0.8676 35 1 -1.7098 2.2908 0.0032 36 1 -1.0566 2.5362 1.6477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687255014.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:06 Heat of formation + Delta-G solvation = -67.100760 kcal Electronic energy + Delta-G solvation = -19353.950716 eV Core-core repulsion = 16386.289805 eV Total energy + Delta-G solvation = -2967.660911 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.44359 -36.62788 -36.18706 -35.32963 -32.21583 -31.04792 -30.64564 -29.18027 -27.19374 -22.86957 -21.90050 -21.54560 -20.54301 -18.64222 -17.44378 -17.04977 -16.89523 -16.32228 -15.52909 -14.67816 -14.55601 -13.99327 -13.66770 -13.44073 -13.06674 -12.85009 -12.48555 -12.29737 -12.16729 -12.05650 -11.83570 -11.59108 -11.50965 -11.36243 -11.21983 -10.95798 -10.88927 -10.69887 -10.15557 -10.11897 -9.81898 -9.39829 -8.74183 -8.60959 -8.27804 -6.13492 -4.09205 0.77650 3.19083 3.24003 3.30816 3.36327 3.98494 4.13665 4.30386 4.33612 4.42192 4.82713 4.99592 5.11064 5.12092 5.31686 5.42749 5.55828 5.59081 5.65323 5.71604 5.75903 5.77400 5.89802 6.11556 6.37604 6.43664 6.49903 6.62025 6.97509 7.09125 7.17925 7.56475 7.82674 8.47277 9.00330 9.48398 11.00165 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.008058 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.828853 B = 3473.832751 C = 3737.972545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.135 4.135 3 C 0.257 3.743 4 H 0.026 0.974 5 C -0.525 4.525 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.887 5.887 9 Si 0.850 3.150 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.249 1.249 13 N -1.096 6.096 14 S 2.617 3.383 15 O -0.968 6.968 16 O -0.936 6.936 17 C -0.622 4.622 18 H 0.139 0.861 19 C -0.101 4.101 20 C 0.045 3.955 21 N -0.668 5.668 22 C 0.073 3.927 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.265 0.735 29 H 0.409 0.591 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.341 0.659 35 H 0.059 0.941 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.283 3.398 0.304 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.152 3.848 4 H 0.043 0.957 5 C -0.564 4.564 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.524 5.524 9 Si 0.676 3.324 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.174 1.174 13 N -0.856 5.856 14 S 2.705 3.295 15 O -0.958 6.958 16 O -0.926 6.926 17 C -0.729 4.729 18 H 0.157 0.843 19 C -0.140 4.140 20 C -0.085 4.085 21 N -0.298 5.298 22 C -0.057 4.057 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.242 0.758 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.077 0.923 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.354 4.410 1.057 16.009 hybrid contribution -1.059 -1.157 -2.115 2.633 sum -16.413 3.253 -1.058 16.765 Atomic orbital electron populations 1.21972 0.98241 1.00556 1.00711 1.22292 0.93057 0.99296 1.02816 1.18752 0.95924 0.89496 0.80670 0.95652 1.21299 0.88916 1.42200 1.03982 0.89886 1.24876 0.94764 0.94493 0.98392 1.69937 1.09788 1.43655 1.29034 0.87483 0.81687 0.78598 0.84598 1.20112 1.21071 1.17402 1.55340 1.82769 1.29139 1.18308 1.04927 0.75611 0.74100 0.74842 1.93554 1.85490 1.83891 1.32865 1.93651 1.44584 1.75619 1.78725 1.31588 1.19709 1.03721 1.17889 0.84317 1.22235 0.96156 0.92009 1.03599 1.22999 0.95276 0.95291 0.94939 1.63064 1.05315 1.08483 1.52903 1.22273 0.89879 0.93694 0.99809 0.92931 0.93834 0.93691 0.91029 0.91631 0.92527 0.75754 0.90160 0.89153 0.93546 0.89377 0.84375 0.92285 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.67 37.16 0.36 -1.95 16 2 C -0.14 -2.54 4.90 -26.73 -0.13 -2.68 16 3 C 0.26 5.51 1.65 -69.08 -0.11 5.40 16 4 H 0.03 0.54 5.87 -51.93 -0.30 0.23 16 5 C -0.53 -14.31 9.16 -34.44 -0.32 -14.63 16 6 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 7 C 0.08 2.18 5.36 -17.82 -0.10 2.08 16 8 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 9 Si 0.85 19.83 25.88 -169.99 -4.40 15.43 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.25 -5.15 5.33 56.52 0.30 -4.85 16 13 N -1.10 -20.59 4.59 -5.88 -0.03 -20.61 16 14 S 2.62 48.55 4.47 -107.50 -0.48 48.07 16 15 O -0.97 -19.26 17.83 -57.54 -1.03 -20.29 16 16 O -0.94 -21.63 17.72 -57.54 -1.02 -22.65 16 17 C -0.62 -8.82 3.46 -25.37 -0.09 -8.91 16 18 H 0.14 1.85 7.46 -51.93 -0.39 1.47 16 19 C -0.10 -1.24 6.62 -24.87 -0.16 -1.40 16 20 C 0.04 0.46 7.55 -1.90 -0.01 0.44 16 21 N -0.67 -7.58 7.51 -110.09 -0.83 -8.40 16 22 C 0.07 0.91 6.24 -2.75 -0.02 0.90 16 23 H 0.05 0.68 6.12 -51.93 -0.32 0.36 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.44 4.71 -51.93 -0.24 1.20 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.41 6.83 8.78 -34.47 -0.30 6.53 16 30 H 0.08 1.02 7.82 -51.92 -0.41 0.61 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.34 2.97 8.92 -39.29 -0.35 2.62 16 35 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 36 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -34.13 295.89 -8.41 -42.54 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.28 Total: 8.03 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.58 Total: -20.74 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.08 Total: -54.85 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.05 Total: -42.94 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.40 Total: 15.43 kcal Atomic # 16 Polarization: 48.55 SS G_CDS: -0.48 Total: 48.07 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.13 -8.41 -42.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687255014.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.561 kcal (2) G-P(sol) polarization free energy of solvation -34.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds