Wall clock time and date at job start Mon Mar 30 2020 04:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46823 * 2 1 4 4 H 1.08995 * 109.47466 * 303.39331 * 3 2 1 5 5 C 1.50700 * 109.46580 * 183.39518 * 3 2 1 6 6 H 1.08005 * 119.99820 * 245.48582 * 5 3 2 7 7 C 1.37870 * 120.00258 * 65.49076 * 5 3 2 8 8 N 1.31517 * 120.00166 * 193.76727 * 7 5 3 9 9 Si 1.86799 * 119.99956 * 13.76187 * 7 5 3 10 10 H 1.48505 * 109.47068 * 84.62148 * 9 7 5 11 11 H 1.48500 * 109.47316 * 204.61739 * 9 7 5 12 12 H 1.48495 * 109.47085 * 324.62071 * 9 7 5 13 13 N 1.46501 * 109.47053 * 63.39688 * 3 2 1 14 14 S 1.65600 * 119.99804 * 213.84188 * 13 3 2 15 15 O 1.42104 * 104.27367 * 180.31557 * 14 13 3 16 16 O 1.42096 * 104.27697 * 308.17369 * 14 13 3 17 17 C 1.81397 * 104.44753 * 64.24741 * 14 13 3 18 18 H 1.08998 * 110.27264 * 299.16893 * 17 14 13 19 19 C 1.54601 * 110.31085 * 176.97528 * 17 14 13 20 20 C 1.54931 * 102.92132 * 219.12529 * 19 17 14 21 21 N 1.48531 * 103.22989 * 37.41389 * 20 19 17 22 22 C 1.47902 * 105.81849 * 320.79127 * 21 20 19 23 23 H 1.08997 * 109.47326 * 304.25192 * 1 2 3 24 24 H 1.09003 * 109.47169 * 64.25392 * 1 2 3 25 25 H 1.09006 * 109.47196 * 184.25170 * 1 2 3 26 26 H 1.08997 * 109.47002 * 239.99818 * 2 1 3 27 27 H 1.09004 * 109.46697 * 119.99859 * 2 1 3 28 28 H 0.96999 * 119.99784 * 179.97438 * 8 7 5 29 29 H 0.96998 * 120.00098 * 33.57154 * 13 3 2 30 30 H 1.09008 * 110.71933 * 337.48332 * 19 17 14 31 31 H 1.08997 * 110.72539 * 100.76469 * 19 17 14 32 32 H 1.08997 * 110.67143 * 278.97548 * 20 19 17 33 33 H 1.09002 * 110.66818 * 155.84417 * 20 19 17 34 34 H 1.00900 * 111.00426 * 200.28051 * 21 20 19 35 35 H 1.08997 * 109.91642 * 265.97905 * 22 21 20 36 36 H 1.08996 * 109.91818 * 144.68475 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8580 5 6 3.5446 1.4433 -0.0841 6 1 4.1315 1.8148 0.7429 7 6 4.1720 0.9699 -1.2169 8 7 5.4621 0.7152 -1.1963 9 14 3.1895 0.6899 -2.7808 10 1 3.0850 1.9652 -3.5346 11 1 3.8738 -0.3263 -3.6200 12 1 1.8290 0.2086 -2.4312 13 7 1.6195 2.1091 1.2350 14 16 1.2506 3.7234 1.2203 15 8 0.9006 4.0150 2.5663 16 8 2.3773 4.3348 0.6073 17 6 -0.2042 3.8453 0.1436 18 1 0.0375 3.4930 -0.8592 19 6 -0.7142 5.3039 0.0938 20 6 -2.2540 5.1330 0.1014 21 7 -2.4641 3.9851 1.0203 22 6 -1.3724 3.0306 0.7291 23 1 -0.3634 0.5784 0.8494 24 1 -0.3634 0.4464 -0.9257 25 1 -0.3634 -1.0249 0.0762 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.9034 0.3818 -1.9932 29 1 1.5535 1.6040 2.0605 30 1 -0.3832 5.8584 0.9720 31 1 -0.3853 5.7965 -0.8212 32 1 -2.6200 4.8977 -0.8980 33 1 -2.7387 6.0293 0.4886 34 1 -3.3663 3.5600 0.8676 35 1 -1.7098 2.2908 0.0032 36 1 -1.0566 2.5362 1.6477 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687255014.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:05 Heat of formation + Delta-G solvation = -97.824240 kcal Electronic energy + Delta-G solvation = -19355.282986 eV Core-core repulsion = 16386.289805 eV Total energy + Delta-G solvation = -2968.993181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37287 -38.23462 -37.76916 -36.93620 -34.27604 -32.43807 -31.62247 -30.12119 -28.96103 -24.54056 -22.91824 -22.51528 -22.10756 -20.09048 -19.09540 -18.64188 -17.87245 -17.79049 -17.18507 -16.38336 -15.60130 -15.52494 -15.07686 -14.58528 -14.46529 -14.12517 -13.98208 -13.61024 -13.37718 -13.19426 -13.09392 -13.07039 -12.99889 -12.78751 -12.62557 -12.57743 -12.18142 -12.15052 -11.74270 -11.62882 -11.33636 -11.11644 -10.61158 -10.00871 -9.50909 -8.26848 -6.28166 -0.66558 1.35149 1.40247 1.47113 1.88698 2.36963 2.83256 3.01861 3.07572 3.24224 3.39664 3.72862 3.96194 4.16106 4.28532 4.32532 4.40493 4.51731 4.57321 4.65542 4.69704 4.75006 4.83158 4.93394 5.00915 5.19032 5.29620 5.48401 5.59623 5.66209 5.70644 6.26316 6.44544 6.45261 6.76033 7.33855 8.91400 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.008058 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.828853 B = 3473.832751 C = 3737.972545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.261 3.739 4 H 0.042 0.958 5 C -0.536 4.536 6 H 0.024 0.976 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.914 3.086 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.196 1.196 13 N -1.097 6.097 14 S 2.608 3.392 15 O -0.991 6.991 16 O -0.998 6.998 17 C -0.594 4.594 18 H 0.158 0.842 19 C -0.115 4.115 20 C 0.049 3.951 21 N -0.682 5.682 22 C 0.069 3.931 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.415 0.585 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.358 0.642 35 H 0.089 0.911 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.847 2.923 -1.476 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.173 4.173 3 C 0.154 3.846 4 H 0.060 0.940 5 C -0.575 4.575 6 H 0.042 0.958 7 C -0.187 4.187 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.118 1.118 13 N -0.856 5.856 14 S 2.704 3.296 15 O -0.981 6.981 16 O -0.988 6.988 17 C -0.707 4.707 18 H 0.175 0.825 19 C -0.155 4.155 20 C -0.080 4.080 21 N -0.314 5.314 22 C -0.062 4.062 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.250 0.750 30 H 0.087 0.913 31 H 0.127 0.873 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.906 3.925 -0.651 20.300 hybrid contribution 0.381 -0.913 -1.436 1.744 sum -19.525 3.011 -2.087 19.866 Atomic orbital electron populations 1.21947 0.94150 1.02608 1.02367 1.22155 0.96646 0.96415 1.02112 1.18630 0.91985 0.91900 0.82100 0.94000 1.21669 0.92364 1.41156 1.02300 0.95809 1.25904 0.95897 0.94289 1.02587 1.70127 1.12420 1.45945 1.30176 0.86442 0.82592 0.78550 0.78777 1.19997 1.21292 1.11782 1.55139 1.83420 1.28937 1.18088 1.04862 0.76437 0.73373 0.74964 1.93514 1.85954 1.83931 1.34694 1.93580 1.49053 1.76654 1.79470 1.31263 1.16673 1.06167 1.16615 0.82455 1.22498 0.98214 0.90533 1.04209 1.23070 0.93183 0.95581 0.96160 1.63023 1.05915 1.08680 1.53747 1.22388 0.89368 0.94193 1.00226 0.91391 0.92135 0.91530 0.92041 0.92309 0.92639 0.75014 0.91298 0.87252 0.91171 0.87911 0.82430 0.89327 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.67 71.98 0.70 -3.01 16 2 C -0.13 -4.68 4.90 30.59 0.15 -4.54 16 3 C 0.26 10.91 1.65 44.24 0.07 10.98 16 4 H 0.04 1.64 5.87 -2.39 -0.01 1.63 16 5 C -0.54 -30.38 9.16 25.60 0.23 -30.15 16 6 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 7 C 0.01 0.62 5.36 84.65 0.45 1.08 16 8 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 9 Si 0.91 40.15 25.88 68.60 1.78 41.93 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.20 -6.91 5.33 99.48 0.53 -6.38 16 13 N -1.10 -41.05 4.59 -172.53 -0.79 -41.84 16 14 S 2.61 96.83 4.47 -56.49 -0.25 96.57 16 15 O -0.99 -39.95 17.83 -127.65 -2.28 -42.22 16 16 O -1.00 -47.96 17.72 -127.65 -2.26 -50.22 16 17 C -0.59 -14.91 3.46 31.47 0.11 -14.80 16 18 H 0.16 3.47 7.46 -2.39 -0.02 3.45 16 19 C -0.11 -2.47 6.62 31.80 0.21 -2.26 16 20 C 0.05 0.78 7.55 86.65 0.65 1.43 16 21 N -0.68 -12.42 7.51 -502.22 -3.77 -16.20 16 22 C 0.07 1.40 6.24 86.45 0.54 1.94 16 23 H 0.07 1.44 6.12 -2.39 -0.01 1.42 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.06 2.27 4.71 -2.39 -0.01 2.26 16 27 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 29 H 0.42 14.00 8.78 -96.75 -0.85 13.15 16 30 H 0.07 1.64 7.82 -2.38 -0.02 1.62 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.36 4.44 8.92 -89.69 -0.80 3.64 16 35 H 0.09 1.35 7.87 -2.39 -0.02 1.33 16 36 H 0.08 1.77 7.01 -2.39 -0.02 1.76 16 Total: -1.00 -80.04 295.89 -4.89 -84.93 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.73 Total: 25.75 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 3.12 Total: -39.32 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -4.27 Total: -117.43 kcal Atomic # 8 Polarization: -87.90 SS G_CDS: -4.54 Total: -92.44 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.78 Total: 41.93 kcal Atomic # 16 Polarization: 96.83 SS G_CDS: -0.25 Total: 96.57 kcal Total: -80.04 -4.89 -84.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687255014.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.893 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds