Wall clock time and date at job start Mon Mar 30 2020 05:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46898 * 109.47006 * 2 1 4 4 C 1.48534 * 111.00272 * 307.39646 * 3 2 1 5 5 C 1.55104 * 103.28250 * 200.33524 * 4 3 2 6 6 C 1.54587 * 102.84613 * 37.30405 * 5 4 3 7 7 H 1.09001 * 110.31317 * 97.12030 * 6 5 4 8 8 N 1.46505 * 110.30925 * 219.18631 * 6 5 4 9 9 C 1.46494 * 120.00109 * 57.20673 * 8 6 5 10 10 S 1.65602 * 120.00031 * 237.21288 * 8 6 5 11 11 O 1.42104 * 106.40275 * 336.45696 * 10 8 6 12 12 O 1.42096 * 106.40308 * 203.53635 * 10 8 6 13 13 C 1.76201 * 107.21768 * 89.99661 * 10 8 6 14 14 H 1.08000 * 120.00595 * 359.97438 * 13 10 8 15 15 C 1.37885 * 119.99870 * 180.02562 * 13 10 8 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 10 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47896 * 110.99822 * 189.99796 * 3 2 1 22 22 H 1.09002 * 109.47112 * 299.99928 * 1 2 3 23 23 H 1.08999 * 109.47106 * 59.99813 * 1 2 3 24 24 H 1.09002 * 109.47287 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47112 * 240.00072 * 2 1 3 26 26 H 1.08999 * 109.46436 * 119.99533 * 2 1 3 27 27 H 1.09001 * 110.66705 * 318.71360 * 4 3 2 28 28 H 1.08998 * 110.66902 * 81.67719 * 4 3 2 29 29 H 1.08998 * 110.70536 * 278.98747 * 5 4 3 30 30 H 1.09003 * 110.80928 * 155.66481 * 5 4 3 31 31 H 1.08998 * 109.47389 * 270.00313 * 9 8 6 32 32 H 1.09006 * 109.47249 * 30.00254 * 9 8 6 33 33 H 1.09000 * 109.47451 * 150.00448 * 9 8 6 34 34 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.92040 * 26.49458 * 21 3 2 36 36 H 1.09003 * 109.92047 * 265.19546 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4031 2.1676 -1.1016 5 6 2.3791 3.3596 -1.2815 6 6 3.7624 2.7091 -1.0511 7 1 4.2253 2.4564 -2.0050 8 7 4.6288 3.6126 -0.2901 9 6 4.2037 4.1012 1.0239 10 16 6.0887 4.0818 -0.9153 11 8 6.4641 3.0816 -1.8523 12 8 6.8987 4.4529 0.1917 13 6 5.8100 5.5535 -1.8433 14 1 4.8154 5.9690 -1.9111 15 6 6.8615 6.1741 -2.4839 16 7 8.0725 5.6679 -2.4018 17 14 6.5658 7.7339 -3.4683 18 1 7.8484 8.2003 -4.0538 19 1 5.5961 7.4552 -4.5578 20 1 6.0181 8.7864 -2.5754 21 6 3.4784 1.4314 -0.2397 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.3518 1.5732 -2.0139 28 1 0.4114 2.5183 -0.8162 29 1 2.1866 4.1312 -0.5360 30 1 2.3084 3.7693 -2.2891 31 1 3.6474 5.0307 0.9035 32 1 3.5668 3.3557 1.5002 33 1 5.0806 4.2807 1.6460 34 1 8.8122 6.1043 -2.8528 35 1 3.7896 0.5543 -0.8072 36 1 4.0100 1.4696 0.7111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688542156.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:30 Heat of formation + Delta-G solvation = -110.238251 kcal Electronic energy + Delta-G solvation = -18948.001206 eV Core-core repulsion = 15978.469713 eV Total energy + Delta-G solvation = -2969.531493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32787 -37.47059 -36.63886 -36.14818 -35.16375 -33.04730 -30.21943 -28.98792 -28.25749 -26.50701 -24.05926 -21.69314 -21.41544 -20.59134 -19.20333 -18.42401 -17.33463 -17.13568 -16.45157 -16.17164 -15.92438 -15.45458 -15.16345 -14.74873 -14.13201 -13.93834 -13.69987 -13.54438 -13.40025 -13.16460 -13.00507 -12.88052 -12.66275 -12.50575 -12.33323 -12.31645 -12.29754 -12.14895 -11.90486 -11.81626 -11.57536 -11.23854 -10.97545 -9.76650 -9.37272 -8.74367 -7.48833 0.29444 1.33458 1.35852 1.48899 2.20295 2.57493 2.77291 3.06410 3.63467 3.75766 3.83416 3.99428 4.23039 4.27952 4.33172 4.36836 4.40549 4.58187 4.65242 4.70716 4.78944 4.82165 4.90698 5.00990 5.03432 5.08633 5.16682 5.21336 5.27334 5.33500 5.42893 5.88918 5.92250 6.00165 6.13655 6.77632 8.20559 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034606 B = 0.006006 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.905296 B = 4661.237633 C = 4995.988386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.036 3.964 3 N -0.519 5.519 4 C 0.043 3.957 5 C -0.133 4.133 6 C 0.133 3.867 7 H 0.082 0.918 8 N -1.000 6.000 9 C 0.089 3.911 10 S 2.716 3.284 11 O -1.042 7.042 12 O -1.041 7.041 13 C -1.039 5.039 14 H 0.119 0.881 15 C 0.069 3.931 16 N -0.896 5.896 17 Si 0.990 3.010 18 H -0.264 1.264 19 H -0.249 1.249 20 H -0.250 1.250 21 C 0.029 3.971 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.299 0.701 35 H 0.051 0.949 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 -5.711 2.308 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.092 4.092 3 N -0.244 5.244 4 C -0.085 4.085 5 C -0.173 4.173 6 C 0.026 3.974 7 H 0.100 0.900 8 N -0.838 5.838 9 C -0.055 4.055 10 S 2.818 3.182 11 O -1.032 7.032 12 O -1.031 7.031 13 C -1.173 5.173 14 H 0.137 0.863 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.173 1.173 20 H -0.174 1.174 21 C -0.100 4.100 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.122 -6.009 2.974 16.542 hybrid contribution 0.454 0.609 -1.392 1.586 sum -14.668 -5.400 1.583 15.710 Atomic orbital electron populations 1.21797 0.93234 1.02637 1.02565 1.22380 0.97260 0.88532 1.01009 1.64860 1.02993 1.12975 1.43569 1.23265 0.98751 0.93648 0.92849 1.22958 0.92434 0.98766 1.03103 1.21769 0.92017 0.89460 0.94176 0.90016 1.57380 1.37415 1.60666 1.28339 1.21511 1.00970 1.00341 0.82720 1.00064 0.70862 0.74790 0.72455 1.93285 1.82116 1.62910 1.64872 1.93283 1.67792 1.85621 1.56452 1.30949 1.03861 1.33162 1.49326 0.86269 1.26047 0.92674 1.01793 0.93827 1.69992 1.01730 1.41398 1.39604 0.85160 0.79327 0.76102 0.78578 1.18806 1.17293 1.17362 1.23187 0.90380 0.96346 1.00135 0.91965 0.92197 0.90968 0.94779 0.90540 0.92942 0.87871 0.89486 0.90096 0.92036 0.88590 0.92064 0.89118 0.93032 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.57 71.98 0.69 -1.43 16 2 C 0.04 0.70 5.75 86.31 0.50 1.19 16 3 N -0.52 -12.39 5.40 -882.66 -4.76 -17.16 16 4 C 0.04 0.92 5.11 86.71 0.44 1.36 16 5 C -0.13 -3.64 6.66 31.86 0.21 -3.42 16 6 C 0.13 4.66 3.37 45.87 0.15 4.81 16 7 H 0.08 3.22 6.99 -2.39 -0.02 3.21 16 8 N -1.00 -41.06 3.09 -511.94 -1.58 -42.64 16 9 C 0.09 3.05 9.31 127.77 1.19 4.24 16 10 S 2.72 149.37 4.97 -56.49 -0.28 149.09 16 11 O -1.04 -63.04 16.62 -128.00 -2.13 -65.17 16 12 O -1.04 -63.39 16.62 -128.00 -2.13 -65.52 16 13 C -1.04 -57.89 9.75 67.74 0.66 -57.23 16 14 H 0.12 5.97 7.81 -2.91 -0.02 5.94 16 15 C 0.07 3.89 5.46 84.66 0.46 4.35 16 16 N -0.90 -54.15 13.19 21.45 0.28 -53.87 16 17 Si 0.99 41.42 29.54 68.60 2.03 43.45 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 21 C 0.03 0.87 5.85 86.45 0.51 1.38 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.84 6.79 -2.39 -0.02 0.82 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.03 0.67 7.81 -2.39 -0.02 0.65 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.06 8.00 -2.39 -0.02 1.04 16 28 H 0.10 1.82 7.65 -2.39 -0.02 1.81 16 29 H 0.09 2.33 6.91 -2.39 -0.02 2.31 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.88 7.88 -2.39 -0.02 1.86 16 32 H 0.10 2.73 6.87 -2.38 -0.02 2.71 16 33 H 0.06 2.28 7.02 -2.39 -0.02 2.26 16 34 H 0.30 16.23 8.31 -92.71 -0.77 15.46 16 35 H 0.05 1.49 7.57 -2.39 -0.02 1.47 16 36 H 0.08 2.49 7.01 -2.39 -0.02 2.47 16 Total: -1.00 -74.39 300.77 -2.70 -77.09 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.06 Total: 19.47 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.81 Total: -44.75 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -6.06 Total: -113.66 kcal Atomic # 8 Polarization: -126.43 SS G_CDS: -4.25 Total: -130.69 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 149.37 SS G_CDS: -0.28 Total: 149.09 kcal Total: -74.39 -2.70 -77.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688542156.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.147 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds