Wall clock time and date at job start Mon Mar 30 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.46883 * 2 1 4 4 C 1.47894 * 110.99671 * 175.71964 * 3 2 1 5 5 C 1.53991 * 107.05871 * 214.14918 * 4 3 2 6 6 C 1.54601 * 105.13757 * 1.22840 * 5 4 3 7 7 H 1.09008 * 110.72319 * 263.59492 * 6 5 4 8 8 N 1.46498 * 110.72339 * 140.49238 * 6 5 4 9 9 C 1.46499 * 120.00278 * 301.45103 * 8 6 5 10 10 S 1.65600 * 119.99996 * 121.45461 * 8 6 5 11 11 O 1.42098 * 106.40453 * 203.53852 * 10 8 6 12 12 O 1.42101 * 106.40479 * 336.45834 * 10 8 6 13 13 C 1.76206 * 107.21967 * 89.99594 * 10 8 6 14 14 H 1.07995 * 119.99441 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00016 * 179.97438 * 13 10 8 16 16 N 1.31513 * 120.00215 * 0.02562 * 15 13 10 17 17 Si 1.86801 * 119.99965 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.46881 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46838 * 120.00394 * 17 15 13 20 20 H 1.48490 * 109.47307 * 240.00408 * 17 15 13 21 21 C 1.48534 * 111.00374 * 58.32052 * 3 2 1 22 22 H 1.09005 * 109.47366 * 174.84594 * 1 2 3 23 23 H 1.09001 * 109.47498 * 294.84064 * 1 2 3 24 24 H 1.09000 * 109.47327 * 54.84833 * 1 2 3 25 25 H 1.08997 * 109.46959 * 119.99449 * 2 1 3 26 26 H 1.08992 * 109.47354 * 239.99434 * 2 1 3 27 27 H 1.08993 * 109.92220 * 333.50654 * 4 3 2 28 28 H 1.09006 * 109.92214 * 94.60197 * 4 3 2 29 29 H 1.08997 * 110.31177 * 120.14222 * 5 4 3 30 30 H 1.09000 * 110.31720 * 242.31288 * 5 4 3 31 31 H 1.08999 * 109.46875 * 89.99706 * 9 8 6 32 32 H 1.08997 * 109.47218 * 210.00668 * 9 8 6 33 33 H 1.09000 * 109.46817 * 330.00721 * 9 8 6 34 34 H 0.96999 * 120.00580 * 179.97438 * 16 15 13 35 35 H 1.08999 * 110.66476 * 278.16112 * 21 3 2 36 36 H 1.09000 * 110.66262 * 41.28644 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4944 1.4258 0.1031 5 6 3.8554 2.6763 0.9260 6 6 2.4996 3.3156 1.3046 7 1 2.2392 4.1103 0.6053 8 7 2.5325 3.8260 2.6774 9 6 2.8255 2.9185 3.7895 10 16 2.2384 5.4288 2.9722 11 8 2.8588 5.7288 4.2149 12 8 2.5378 6.1200 1.7672 13 6 0.5036 5.6025 3.2274 14 1 -0.1394 4.7365 3.1737 15 6 -0.0327 6.8438 3.4967 16 7 0.7504 7.8983 3.5625 17 14 -1.8719 7.0280 3.7665 18 1 -2.5262 5.7009 3.6397 19 1 -2.1206 7.5743 5.1249 20 1 -2.4310 7.9551 2.7502 21 6 1.5104 2.1297 1.1800 22 1 -0.3634 -1.0235 -0.0923 23 1 -0.3634 0.4317 0.9326 24 1 -0.3634 0.5917 -0.8402 25 1 1.8933 -0.5137 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 3.8561 0.5309 0.6093 28 1 3.9345 1.4927 -0.8919 29 1 4.4038 2.3927 1.8243 30 1 4.4450 3.3680 0.3245 31 1 3.9009 2.8956 3.9661 32 1 2.3171 3.2686 4.6878 33 1 2.4766 1.9160 3.5419 34 1 0.3731 8.7716 3.7516 35 1 0.4979 2.4905 0.9996 36 1 1.5441 1.5052 2.0728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688542160.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:33 Heat of formation + Delta-G solvation = -110.600908 kcal Electronic energy + Delta-G solvation = -19021.963165 eV Core-core repulsion = 16052.415946 eV Total energy + Delta-G solvation = -2969.547219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32264 -37.46932 -36.62738 -36.15009 -35.16939 -33.29849 -29.57834 -29.37514 -28.26632 -26.96211 -23.70249 -21.76912 -21.44891 -20.64968 -19.20727 -18.42393 -17.37216 -17.19242 -16.57319 -16.00412 -15.79011 -15.41517 -14.96937 -14.67934 -14.56575 -14.07095 -13.97180 -13.56014 -13.36251 -13.18686 -13.04204 -12.92227 -12.59920 -12.49103 -12.48043 -12.29495 -12.28822 -12.15954 -11.96617 -11.70663 -11.49865 -11.27730 -10.95826 -9.80426 -9.33773 -8.75619 -7.49662 0.27355 1.31923 1.32735 1.50622 2.19175 2.56329 2.69959 3.15378 3.65421 3.68612 3.85181 4.03575 4.14239 4.22031 4.30407 4.35210 4.42238 4.58041 4.60742 4.68337 4.70493 4.83175 4.87419 4.97471 4.99707 5.05569 5.11992 5.22417 5.23695 5.34388 5.42057 5.83124 5.89802 6.03160 6.16603 6.77061 8.19967 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.023410 B = 0.007202 C = 0.006082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.785277 B = 3886.999493 C = 4602.490734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 N -0.530 5.530 4 C 0.046 3.954 5 C -0.143 4.143 6 C 0.138 3.862 7 H 0.083 0.917 8 N -1.002 6.002 9 C 0.091 3.909 10 S 2.716 3.284 11 O -1.040 7.040 12 O -1.040 7.040 13 C -1.038 5.038 14 H 0.119 0.881 15 C 0.069 3.931 16 N -0.896 5.896 17 Si 0.989 3.011 18 H -0.246 1.246 19 H -0.258 1.258 20 H -0.259 1.259 21 C 0.033 3.967 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.299 0.701 35 H 0.078 0.922 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 -16.639 -4.546 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.084 4.084 3 N -0.256 5.256 4 C -0.082 4.082 5 C -0.182 4.182 6 C 0.031 3.969 7 H 0.101 0.899 8 N -0.839 5.839 9 C -0.054 4.054 10 S 2.819 3.181 11 O -1.030 7.030 12 O -1.030 7.030 13 C -1.172 5.172 14 H 0.137 0.863 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.807 3.193 18 H -0.169 1.169 19 H -0.182 1.182 20 H -0.183 1.183 21 C -0.096 4.096 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.381 -15.581 -4.974 16.360 hybrid contribution -0.867 0.117 0.990 1.321 sum -0.486 -15.464 -3.984 15.976 Atomic orbital electron populations 1.21816 0.94631 1.02553 1.01873 1.22330 0.96432 0.88010 1.01652 1.64776 1.07205 1.14509 1.39106 1.22817 0.88045 0.96607 1.00722 1.22808 0.96741 0.97754 1.00933 1.21739 0.96651 0.96870 0.81681 0.89872 1.57405 1.86842 1.27408 1.12249 1.21518 1.01173 0.94951 0.87717 1.00103 0.76447 0.70148 0.71445 1.93295 1.79542 1.83171 1.46997 1.93292 1.87420 1.72261 1.50077 1.30990 1.19985 1.02165 1.64057 0.86310 1.26035 1.06924 0.93257 0.88116 1.69994 1.40175 1.01716 1.40851 0.85119 0.74638 0.80196 0.79335 1.16891 1.18208 1.18345 1.23453 0.98740 0.94508 0.92892 0.90446 0.93438 0.92621 0.93968 0.89362 0.91750 0.89192 0.89815 0.90964 0.92315 0.91884 0.88665 0.89093 0.90404 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.59 71.98 0.69 -2.06 16 2 C 0.04 0.81 5.56 86.30 0.48 1.29 16 3 N -0.53 -13.03 5.35 -883.07 -4.73 -17.76 16 4 C 0.05 1.01 6.70 86.45 0.58 1.59 16 5 C -0.14 -3.98 6.55 31.47 0.21 -3.77 16 6 C 0.14 4.89 3.44 46.20 0.16 5.05 16 7 H 0.08 3.46 7.03 -2.38 -0.02 3.44 16 8 N -1.00 -40.57 3.20 -510.23 -1.63 -42.20 16 9 C 0.09 2.93 9.20 127.77 1.18 4.11 16 10 S 2.72 149.29 4.92 -56.49 -0.28 149.01 16 11 O -1.04 -62.92 17.09 -128.00 -2.19 -65.11 16 12 O -1.04 -63.48 16.64 -128.00 -2.13 -65.61 16 13 C -1.04 -57.95 9.75 67.73 0.66 -57.29 16 14 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 15 C 0.07 3.90 5.46 84.65 0.46 4.36 16 16 N -0.90 -54.26 13.19 21.45 0.28 -53.98 16 17 Si 0.99 41.65 29.54 68.60 2.03 43.68 16 18 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 C 0.03 0.96 4.90 86.65 0.42 1.39 16 22 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.05 0.94 7.18 -2.39 -0.02 0.93 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.04 0.71 7.97 -2.39 -0.02 0.70 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 28 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 2.15 6.99 -2.39 -0.02 2.14 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.72 7.90 -2.39 -0.02 1.70 16 32 H 0.06 2.17 7.79 -2.39 -0.02 2.15 16 33 H 0.09 2.32 6.08 -2.39 -0.01 2.31 16 34 H 0.30 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.08 2.39 7.77 -2.39 -0.02 2.38 16 36 H 0.07 1.69 5.97 -2.39 -0.01 1.67 16 Total: -1.00 -75.37 301.58 -2.75 -78.12 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 1.06 Total: 19.20 kcal Atomic # 6 Polarization: -50.17 SS G_CDS: 4.84 Total: -45.33 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -6.07 Total: -113.95 kcal Atomic # 8 Polarization: -126.40 SS G_CDS: -4.32 Total: -130.72 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 149.29 SS G_CDS: -0.28 Total: 149.01 kcal Total: -75.37 -2.75 -78.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688542160.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.483 kcal (2) G-P(sol) polarization free energy of solvation -75.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds