Wall clock time and date at job start Mon Mar 30 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47273 * 2 1 4 4 C 1.46897 * 111.00309 * 160.26294 * 3 2 1 5 5 C 1.53001 * 109.47203 * 287.96809 * 4 3 2 6 6 C 1.46893 * 111.00012 * 284.22182 * 3 2 1 7 7 C 1.53501 * 114.20645 * 180.02562 * 6 3 2 8 8 N 1.47066 * 87.98352 * 220.34330 * 7 6 3 9 9 S 1.65604 * 136.05553 * 207.08021 * 8 7 6 10 10 O 1.42092 * 106.40492 * 336.46353 * 9 8 7 11 11 O 1.42105 * 106.40095 * 203.53911 * 9 8 7 12 12 C 1.76205 * 107.21402 * 90.00302 * 9 8 7 13 13 H 1.07997 * 120.00244 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99690 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99831 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47095 * 269.99748 * 16 14 12 18 18 H 1.48500 * 109.47116 * 29.99653 * 16 14 12 19 19 H 1.48494 * 109.47038 * 149.99868 * 16 14 12 20 20 C 1.47059 * 87.88788 * 27.33953 * 8 7 6 21 21 H 1.09005 * 109.46862 * 306.17465 * 1 2 3 22 22 H 1.08991 * 109.47329 * 66.17455 * 1 2 3 23 23 H 1.08999 * 109.46947 * 186.17725 * 1 2 3 24 24 H 1.09002 * 109.46835 * 240.00085 * 2 1 3 25 25 H 1.09001 * 109.46965 * 120.00141 * 2 1 3 26 26 H 1.09005 * 109.46766 * 47.96129 * 4 3 2 27 27 H 1.08999 * 109.47468 * 167.96316 * 4 3 2 28 28 H 1.08993 * 109.47652 * 58.87022 * 5 4 3 29 29 H 1.09007 * 109.46962 * 178.87094 * 5 4 3 30 30 H 1.09000 * 109.47068 * 298.86461 * 5 4 3 31 31 H 1.09002 * 113.41568 * 313.19716 * 6 3 2 32 32 H 1.08997 * 113.47186 * 105.56591 * 7 6 3 33 33 H 1.08998 * 113.46517 * 335.11880 * 7 6 3 34 34 H 0.97005 * 119.99528 * 180.02562 * 15 14 12 35 35 H 1.09001 * 113.46979 * 87.43853 * 20 8 7 36 36 H 1.09003 * 113.47209 * 217.87347 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4122 1.4510 0.4631 5 6 3.4618 1.1868 1.9693 6 6 1.8775 1.9936 -1.3293 7 6 2.3691 3.4454 -1.4127 8 7 1.2030 3.7368 -2.2601 9 16 0.8366 4.8295 -3.4494 10 8 1.7021 5.9395 -3.2551 11 8 -0.5799 4.9423 -3.4680 12 6 1.2980 4.1017 -4.9863 13 1 1.7324 3.1132 -5.0070 14 6 1.1055 4.7949 -6.1626 15 7 0.5771 5.9989 -6.1374 16 14 1.5953 4.0237 -7.7920 17 1 3.0033 4.3780 -8.1039 18 1 1.4651 2.5473 -7.6999 19 1 0.7070 4.5329 -8.8675 20 6 0.5033 2.6353 -1.5821 21 1 -0.3633 0.6066 0.8296 22 1 -0.3633 0.4151 -0.9400 23 1 -0.3633 -1.0217 0.1106 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.0043 0.6983 -0.0575 27 1 3.8180 2.4409 0.2543 28 1 3.0377 0.2051 2.1802 29 1 4.4971 1.2160 2.3094 30 1 2.8862 1.9511 2.4915 31 1 2.2321 1.3549 -2.1383 32 1 3.3211 3.5522 -1.9327 33 1 2.3506 3.9655 -0.4551 34 1 0.4413 6.4864 -6.9650 35 1 -0.0071 2.9419 -0.6691 36 1 -0.1343 2.0519 -2.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697776556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:42 Heat of formation + Delta-G solvation = -50.853801 kcal Electronic energy + Delta-G solvation = -18639.589159 eV Core-core repulsion = 15672.632769 eV Total energy + Delta-G solvation = -2966.956390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.56762 -36.30186 -35.17620 -33.94403 -33.08057 -31.88622 -29.41139 -26.36689 -26.08457 -25.51439 -22.93770 -21.44973 -19.90395 -18.52310 -17.45780 -16.29381 -15.97674 -15.62130 -15.07495 -14.57378 -14.34751 -14.29294 -13.92692 -13.20174 -12.72322 -12.66346 -12.29114 -12.21582 -12.02887 -11.94433 -11.63344 -11.47023 -11.24007 -11.20741 -11.10792 -10.78796 -10.61029 -10.29263 -10.22663 -10.14796 -10.04982 -9.25126 -8.91834 -8.38388 -8.21083 -6.69866 -5.31783 2.18669 3.06232 3.12566 3.19077 3.87228 4.07005 4.54594 4.59359 4.64500 4.92301 5.13405 5.19776 5.29558 5.37341 5.41714 5.53968 5.62674 5.66540 5.70554 5.79523 5.88700 5.93391 5.95508 5.97954 6.02737 6.10872 6.14850 6.31384 6.35889 7.07220 7.17420 7.19228 7.30202 7.37549 7.99101 8.88512 10.24014 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.005674 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.045924 B = 4933.346973 C = 5098.418415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 N -0.527 5.527 4 C 0.047 3.953 5 C -0.146 4.146 6 C 0.033 3.967 7 C 0.137 3.863 8 N -1.047 6.047 9 S 2.737 3.263 10 O -1.001 7.001 11 O -1.000 7.000 12 C -1.017 5.017 13 H 0.101 0.899 14 C 0.132 3.868 15 N -0.846 5.846 16 Si 0.922 3.078 17 H -0.267 1.267 18 H -0.263 1.263 19 H -0.274 1.274 20 C 0.144 3.856 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.034 0.966 25 H 0.071 0.929 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.291 0.709 35 H 0.081 0.919 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -12.105 11.084 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.079 4.079 3 N -0.253 5.253 4 C -0.081 4.081 5 C -0.204 4.204 6 C -0.077 4.077 7 C 0.010 3.990 8 N -0.883 5.883 9 S 2.839 3.161 10 O -0.991 6.991 11 O -0.990 6.990 12 C -1.150 5.150 13 H 0.120 0.880 14 C -0.086 4.086 15 N -0.476 5.476 16 Si 0.746 3.254 17 H -0.192 1.192 18 H -0.187 1.187 19 H -0.199 1.199 20 C 0.017 3.983 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.530 -10.626 11.316 15.920 hybrid contribution 0.970 -1.256 -1.864 2.448 sum 4.500 -11.883 9.453 15.837 Atomic orbital electron populations 1.21829 0.94829 1.01176 1.03032 1.22125 0.96474 0.88773 1.00517 1.62238 1.20167 1.18052 1.24878 1.22078 0.88592 1.01626 0.95820 1.21787 1.01180 1.01915 0.95475 1.23888 0.99191 0.95054 0.89607 1.22308 0.90215 0.92017 0.94433 1.60620 1.24514 1.51425 1.51704 0.99902 0.72713 0.70953 0.72525 1.93353 1.68595 1.50252 1.86923 1.93357 1.32470 1.85646 1.87566 1.30588 1.57160 1.14926 1.12362 0.88026 1.24775 0.89719 0.93295 1.00835 1.69899 1.35614 1.10652 1.31454 0.86137 0.79152 0.80139 0.79949 1.19187 1.18711 1.19906 1.22379 0.93782 0.85957 0.96144 0.91781 0.92146 0.92764 0.94730 0.91024 0.94902 0.90326 0.92907 0.92578 0.91857 0.90065 0.91092 0.90212 0.89843 0.90072 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.59 37.16 0.36 -1.16 16 2 C 0.05 0.50 5.55 -3.83 -0.02 0.48 16 3 N -0.53 -6.27 4.40 -226.26 -0.99 -7.26 16 4 C 0.05 0.48 5.58 -3.83 -0.02 0.46 16 5 C -0.15 -1.25 9.99 37.16 0.37 -0.88 16 6 C 0.03 0.47 3.44 -67.46 -0.23 0.24 16 7 C 0.14 2.30 7.03 -8.51 -0.06 2.24 16 8 N -1.05 -22.19 4.23 -125.04 -0.53 -22.72 16 9 S 2.74 75.58 5.55 -107.50 -0.60 74.98 16 10 O -1.00 -30.28 18.02 -57.17 -1.03 -31.31 16 11 O -1.00 -30.30 18.02 -57.17 -1.03 -31.33 16 12 C -1.02 -28.63 9.75 30.60 0.30 -28.33 16 13 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 14 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 15 N -0.85 -25.29 13.19 55.43 0.73 -24.56 16 16 Si 0.92 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 C 0.14 2.45 6.80 -8.38 -0.06 2.40 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.67 6.17 -51.93 -0.32 0.35 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.03 0.36 7.88 -51.93 -0.41 -0.05 16 25 H 0.07 0.64 6.24 -51.93 -0.32 0.32 16 26 H 0.03 0.32 8.05 -51.93 -0.42 -0.09 16 27 H 0.08 0.83 6.63 -51.93 -0.34 0.48 16 28 H 0.05 0.43 6.51 -51.93 -0.34 0.09 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.16 7.97 -51.93 -0.41 0.75 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.23 7.99 -51.93 -0.41 0.82 16 34 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.16 7.59 -51.93 -0.39 0.77 16 LS Contribution 307.46 15.07 4.63 4.63 Total: -1.00 -35.07 307.46 -8.76 -43.83 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.46 Total: -1.13 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 0.54 Total: -20.93 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.79 Total: -54.54 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -2.06 Total: -62.64 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 75.58 SS G_CDS: -0.60 Total: 74.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.07 -8.76 -43.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697776556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.022 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds