Wall clock time and date at job start Mon Mar 30 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46898 * 109.47273 * 2 1 4 4 C 1.46897 * 111.00309 * 160.26294 * 3 2 1 5 5 C 1.53001 * 109.47203 * 287.96809 * 4 3 2 6 6 C 1.46893 * 111.00012 * 284.22182 * 3 2 1 7 7 C 1.53501 * 114.20645 * 180.02562 * 6 3 2 8 8 N 1.47066 * 87.98352 * 220.34330 * 7 6 3 9 9 S 1.65604 * 136.05553 * 207.08021 * 8 7 6 10 10 O 1.42092 * 106.40492 * 336.46353 * 9 8 7 11 11 O 1.42105 * 106.40095 * 203.53911 * 9 8 7 12 12 C 1.76205 * 107.21402 * 90.00302 * 9 8 7 13 13 H 1.07997 * 120.00244 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99690 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99831 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99902 * 179.97438 * 14 12 9 17 17 H 1.48497 * 109.47095 * 269.99748 * 16 14 12 18 18 H 1.48500 * 109.47116 * 29.99653 * 16 14 12 19 19 H 1.48494 * 109.47038 * 149.99868 * 16 14 12 20 20 C 1.47059 * 87.88788 * 27.33953 * 8 7 6 21 21 H 1.09005 * 109.46862 * 306.17465 * 1 2 3 22 22 H 1.08991 * 109.47329 * 66.17455 * 1 2 3 23 23 H 1.08999 * 109.46947 * 186.17725 * 1 2 3 24 24 H 1.09002 * 109.46835 * 240.00085 * 2 1 3 25 25 H 1.09001 * 109.46965 * 120.00141 * 2 1 3 26 26 H 1.09005 * 109.46766 * 47.96129 * 4 3 2 27 27 H 1.08999 * 109.47468 * 167.96316 * 4 3 2 28 28 H 1.08993 * 109.47652 * 58.87022 * 5 4 3 29 29 H 1.09007 * 109.46962 * 178.87094 * 5 4 3 30 30 H 1.09000 * 109.47068 * 298.86461 * 5 4 3 31 31 H 1.09002 * 113.41568 * 313.19716 * 6 3 2 32 32 H 1.08997 * 113.47186 * 105.56591 * 7 6 3 33 33 H 1.08998 * 113.46517 * 335.11880 * 7 6 3 34 34 H 0.97005 * 119.99528 * 180.02562 * 15 14 12 35 35 H 1.09001 * 113.46979 * 87.43853 * 20 8 7 36 36 H 1.09003 * 113.47209 * 217.87347 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4122 1.4510 0.4631 5 6 3.4618 1.1868 1.9693 6 6 1.8775 1.9936 -1.3293 7 6 2.3691 3.4454 -1.4127 8 7 1.2030 3.7368 -2.2601 9 16 0.8366 4.8295 -3.4494 10 8 1.7021 5.9395 -3.2551 11 8 -0.5799 4.9423 -3.4680 12 6 1.2980 4.1017 -4.9863 13 1 1.7324 3.1132 -5.0070 14 6 1.1055 4.7949 -6.1626 15 7 0.5771 5.9989 -6.1374 16 14 1.5953 4.0237 -7.7920 17 1 3.0033 4.3780 -8.1039 18 1 1.4651 2.5473 -7.6999 19 1 0.7070 4.5329 -8.8675 20 6 0.5033 2.6353 -1.5821 21 1 -0.3633 0.6066 0.8296 22 1 -0.3633 0.4151 -0.9400 23 1 -0.3633 -1.0217 0.1106 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.0043 0.6983 -0.0575 27 1 3.8180 2.4409 0.2543 28 1 3.0377 0.2051 2.1802 29 1 4.4971 1.2160 2.3094 30 1 2.8862 1.9511 2.4915 31 1 2.2321 1.3549 -2.1383 32 1 3.3211 3.5522 -1.9327 33 1 2.3506 3.9655 -0.4551 34 1 0.4413 6.4864 -6.9650 35 1 -0.0071 2.9419 -0.6691 36 1 -0.1343 2.0519 -2.2464 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697776556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:41 Heat of formation + Delta-G solvation = -79.349302 kcal Electronic energy + Delta-G solvation = -18640.824817 eV Core-core repulsion = 15672.632769 eV Total energy + Delta-G solvation = -2968.192048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82387 -37.44575 -37.38465 -36.20847 -35.22129 -32.66374 -30.44705 -28.31598 -27.62145 -26.86421 -23.74510 -22.55879 -21.15027 -20.43262 -19.21344 -18.32193 -17.24331 -17.00141 -16.77256 -16.11014 -15.90160 -15.52879 -15.22808 -14.63956 -14.10176 -14.06903 -13.79798 -13.45769 -13.33121 -13.14928 -13.03722 -12.94578 -12.59233 -12.53328 -12.49329 -12.44517 -12.32228 -12.04065 -11.89620 -11.44569 -11.28520 -11.26186 -10.99607 -9.90599 -9.27648 -8.78688 -7.53544 0.17022 1.31561 1.32839 1.49293 2.17932 2.53488 2.74909 3.00323 3.31314 3.74835 3.97541 4.01709 4.11721 4.20237 4.36971 4.43464 4.55283 4.64396 4.65274 4.68547 4.72799 4.81603 4.92249 4.99753 5.15931 5.20351 5.22316 5.24162 5.38941 5.47945 5.52647 5.64663 5.91899 6.18096 6.23697 6.73027 8.17536 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028622 B = 0.005674 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.045924 B = 4933.346973 C = 5098.418415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 N -0.532 5.532 4 C 0.043 3.957 5 C -0.140 4.140 6 C 0.061 3.939 7 C 0.130 3.870 8 N -1.061 6.061 9 S 2.741 3.259 10 O -1.041 7.041 11 O -1.041 7.041 12 C -1.036 5.036 13 H 0.119 0.881 14 C 0.067 3.933 15 N -0.895 5.895 16 Si 0.996 3.004 17 H -0.253 1.253 18 H -0.247 1.247 19 H -0.261 1.261 20 C 0.136 3.864 21 H 0.059 0.941 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.300 0.700 35 H 0.090 0.910 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.541 -14.600 11.187 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.079 4.079 3 N -0.258 5.258 4 C -0.085 4.085 5 C -0.198 4.198 6 C -0.050 4.050 7 C 0.004 3.996 8 N -0.900 5.900 9 S 2.846 3.154 10 O -1.032 7.032 11 O -1.032 7.032 12 C -1.170 5.170 13 H 0.138 0.862 14 C -0.146 4.146 15 N -0.527 5.527 16 Si 0.813 3.187 17 H -0.177 1.177 18 H -0.171 1.171 19 H -0.185 1.185 20 C 0.011 3.989 21 H 0.078 0.922 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.055 0.945 25 H 0.109 0.891 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.731 -13.118 11.456 18.047 hybrid contribution 0.599 -0.528 -1.737 1.912 sum 5.330 -13.645 9.719 17.581 Atomic orbital electron populations 1.21834 0.94877 1.02122 1.02015 1.22214 0.96419 0.87744 1.01563 1.62218 1.21533 1.19230 1.22818 1.22182 0.87514 1.01736 0.97041 1.21742 1.02066 1.02005 0.93947 1.23512 0.96302 0.93822 0.91352 1.22644 0.89036 0.93835 0.94072 1.60060 1.27243 1.51275 1.51461 0.99264 0.71575 0.71229 0.73367 1.93286 1.69102 1.53046 1.87731 1.93289 1.34711 1.86720 1.88460 1.30899 1.57377 1.15810 1.12885 0.86246 1.26119 0.89172 0.93657 1.05629 1.69996 1.36974 1.12492 1.33221 0.85054 0.79537 0.79787 0.74280 1.17679 1.17055 1.18489 1.22703 0.95430 0.84769 0.96002 0.92185 0.93627 0.91016 0.94465 0.89110 0.94016 0.90823 0.92142 0.91181 0.92654 0.89553 0.90616 0.88984 0.88956 0.89167 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.59 71.98 0.69 -2.02 16 2 C 0.05 0.85 5.55 86.30 0.48 1.33 16 3 N -0.53 -11.37 4.40 -869.75 -3.82 -15.19 16 4 C 0.04 0.76 5.58 86.30 0.48 1.24 16 5 C -0.14 -2.01 9.99 71.98 0.72 -1.29 16 6 C 0.06 1.65 3.44 45.48 0.16 1.81 16 7 C 0.13 4.24 7.03 83.18 0.58 4.83 16 8 N -1.06 -45.22 4.23 -549.52 -2.32 -47.55 16 9 S 2.74 155.60 5.55 -56.49 -0.31 155.29 16 10 O -1.04 -65.23 18.02 -128.00 -2.31 -67.54 16 11 O -1.04 -65.47 18.02 -128.00 -2.31 -67.77 16 12 C -1.04 -58.69 9.75 67.74 0.66 -58.03 16 13 H 0.12 6.09 7.81 -2.91 -0.02 6.07 16 14 C 0.07 3.79 5.46 84.66 0.46 4.26 16 15 N -0.90 -54.55 13.19 21.45 0.28 -54.27 16 16 Si 1.00 41.68 29.54 68.60 2.03 43.71 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 19 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 20 C 0.14 4.57 6.80 83.27 0.57 5.13 16 21 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 22 H 0.04 0.95 6.17 -2.39 -0.01 0.93 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.04 0.66 7.88 -2.39 -0.02 0.64 16 25 H 0.09 1.29 6.24 -2.39 -0.01 1.28 16 26 H 0.04 0.69 8.05 -2.38 -0.02 0.67 16 27 H 0.07 1.39 6.63 -2.39 -0.02 1.38 16 28 H 0.06 0.78 6.51 -2.39 -0.02 0.76 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.09 2.29 7.97 -2.39 -0.02 2.27 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 34 H 0.30 16.32 8.31 -92.70 -0.77 15.55 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.07 2.35 7.59 -2.39 -0.02 2.33 16 Total: -1.00 -77.26 307.46 -2.91 -80.17 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.06 Total: 15.90 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 4.80 Total: -42.74 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -5.87 Total: -117.01 kcal Atomic # 8 Polarization: -130.70 SS G_CDS: -4.61 Total: -135.31 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 155.60 SS G_CDS: -0.31 Total: 155.29 kcal Total: -77.26 -2.91 -80.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697776556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.817 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds