Wall clock time and date at job start Mon Mar 30 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00369 * 2 1 4 4 N 1.34780 * 119.99671 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00071 * 185.09254 * 4 2 1 6 6 C 1.39292 * 119.99891 * 5.09427 * 4 2 1 7 7 C 1.38823 * 120.16974 * 270.27204 * 6 4 2 8 8 C 1.38046 * 120.07457 * 180.31783 * 7 6 4 9 9 C 1.38578 * 120.41833 * 359.68326 * 8 7 6 10 10 C 1.37787 * 120.33267 * 0.02562 * 9 8 7 11 11 C 1.39746 * 119.91790 * 359.97438 * 10 9 8 12 12 C 1.47406 * 120.20353 * 180.02562 * 11 10 9 13 13 O 1.21632 * 119.99712 * 180.02562 * 12 11 10 14 14 N 1.34773 * 120.00058 * 0.02562 * 12 11 10 15 15 C 1.36897 * 119.99764 * 179.72154 * 14 12 11 16 16 H 1.07994 * 120.00426 * 0.28488 * 15 14 12 17 17 C 1.39034 * 119.99705 * 180.27348 * 15 14 12 18 18 N 1.31378 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47138 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46880 * 119.99918 * 19 17 15 22 22 H 1.48490 * 109.47377 * 240.00704 * 19 17 15 23 23 H 1.08998 * 109.47188 * 185.03878 * 1 2 3 24 24 H 1.09008 * 109.46790 * 305.04200 * 1 2 3 25 25 H 1.09003 * 109.46779 * 65.03435 * 1 2 3 26 26 H 1.09007 * 109.47160 * 265.04569 * 5 4 2 27 27 H 1.09000 * 109.46976 * 25.04241 * 5 4 2 28 28 H 1.08992 * 109.47622 * 145.04511 * 5 4 2 29 29 H 1.08001 * 119.96482 * 0.02562 * 7 6 4 30 30 H 1.08000 * 119.78815 * 179.70157 * 8 7 6 31 31 H 1.08000 * 119.82895 * 180.02562 * 9 8 7 32 32 H 1.07996 * 120.03908 * 180.02562 * 10 9 8 33 33 H 0.96998 * 120.00171 * 0.02562 * 14 12 11 34 34 H 0.96994 * 119.99869 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6415 -1.1698 0.1131 6 6 1.4884 -2.3712 -0.1061 7 6 1.0444 -3.0241 1.0358 8 6 0.3641 -4.2204 0.9282 9 6 0.1132 -4.7755 -0.3165 10 6 0.5410 -4.1390 -1.4613 11 6 1.2309 -2.9272 -1.3686 12 6 1.6909 -2.2406 -2.5892 13 8 2.2915 -1.1863 -2.5042 14 7 1.4460 -2.7810 -3.7993 15 6 1.8682 -2.1404 -4.9331 16 1 2.4016 -1.2044 -4.8577 17 6 1.6106 -2.6950 -6.1817 18 7 0.9615 -3.8336 -6.2735 19 14 2.1873 -1.8214 -7.7288 20 1 2.8899 -0.5671 -7.3563 21 1 3.1162 -2.7044 -8.4788 22 1 1.0150 -1.4981 -8.5810 23 1 -0.3633 -1.0237 0.0903 24 1 -0.3633 0.5901 0.8415 25 1 -0.3633 0.4338 -0.9317 26 1 4.0827 -1.2141 -0.8827 27 1 3.9688 -0.2594 0.6153 28 1 3.9600 -2.0377 0.6905 29 1 1.2355 -2.5980 2.0096 30 1 0.0249 -4.7269 1.8198 31 1 -0.4202 -5.7117 -0.3897 32 1 0.3426 -4.5756 -2.4289 33 1 0.9667 -3.6216 -3.8671 34 1 0.7814 -4.2203 -7.1446 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701338097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:21 Heat of formation + Delta-G solvation = -33.030023 kcal Electronic energy + Delta-G solvation = -19853.953850 eV Core-core repulsion = 16752.326405 eV Total energy + Delta-G solvation = -3101.627444 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29903 -38.49846 -37.38884 -35.08342 -33.96743 -31.69246 -30.53239 -30.16210 -29.44513 -25.84810 -25.25491 -23.10751 -22.49402 -19.90710 -19.12830 -18.11950 -16.98459 -16.51444 -16.02597 -15.53275 -15.02384 -14.51322 -14.32651 -14.08703 -13.73975 -13.61986 -13.13527 -12.84477 -12.58333 -12.37539 -12.10611 -11.88226 -11.69518 -11.57635 -11.48459 -11.20907 -11.17083 -10.42802 -10.35365 -9.69189 -9.62909 -8.74064 -8.68566 -8.47409 -8.17229 -8.10763 -6.62907 -3.94137 1.17390 1.43784 3.07655 3.09118 3.18749 3.26599 3.48480 3.55607 4.04012 4.35638 4.75469 4.94328 5.05467 5.11252 5.22188 5.36780 5.49901 5.61095 5.70520 5.75120 5.80799 5.96886 5.97368 6.15476 6.16243 6.40720 6.43287 6.61878 6.70913 6.83767 7.08581 7.37388 7.88891 7.92785 8.44471 8.64172 9.00971 9.35390 9.92687 10.53839 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.006865 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.627869 B = 4077.762619 C = 4979.151052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.536 3.464 3 O -0.549 6.549 4 N -0.552 5.552 5 C 0.096 3.904 6 C 0.162 3.838 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.099 4.099 11 C -0.093 4.093 12 C 0.458 3.542 13 O -0.579 6.579 14 N -0.542 5.542 15 C -0.290 4.290 16 H 0.109 0.891 17 C 0.023 3.977 18 N -0.888 5.888 19 Si 0.933 3.067 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.279 1.279 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.392 0.608 34 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 -3.970 12.065 13.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.326 3.674 3 O -0.426 6.426 4 N -0.281 5.281 5 C -0.046 4.046 6 C 0.069 3.931 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.135 4.135 10 C -0.119 4.119 11 C -0.099 4.099 12 C 0.246 3.754 13 O -0.465 6.465 14 N -0.176 5.176 15 C -0.419 4.419 16 H 0.126 0.874 17 C -0.180 4.180 18 N -0.528 5.528 19 Si 0.760 3.240 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.205 1.205 23 H 0.094 0.906 24 H 0.106 0.894 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.227 0.773 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.460 -2.771 11.890 12.454 hybrid contribution -0.108 -0.465 -1.040 1.144 sum -2.568 -3.236 10.850 11.610 Atomic orbital electron populations 1.21868 0.92451 1.04130 1.04674 1.20461 0.90163 0.82565 0.74174 1.90635 1.70772 1.30820 1.50410 1.44685 1.07015 1.03774 1.72628 1.21586 0.78912 1.01532 1.02573 1.17381 0.96439 0.87769 0.91536 1.21279 0.99546 0.95924 0.97558 1.21022 0.99379 0.95483 0.97615 1.21103 1.00132 1.00037 0.92242 1.21416 0.97018 0.94136 0.99310 1.20810 0.98927 0.95451 0.94665 1.17592 0.87315 0.87620 0.82842 1.90681 1.46033 1.23636 1.86137 1.41945 1.48687 1.22320 1.04693 1.19898 1.32777 1.06395 0.82861 0.87354 1.25387 0.96734 0.96159 0.99742 1.69594 1.39084 1.17735 1.26394 0.85728 0.78512 0.79471 0.80320 1.18949 1.20484 1.20466 0.90591 0.89384 0.88815 0.91412 0.90800 0.92427 0.85711 0.85811 0.85695 0.85089 0.77278 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.07 36.01 0.36 -2.33 16 2 C 0.54 10.58 6.81 -10.98 -0.07 10.50 16 3 O -0.55 -12.62 16.65 5.56 0.09 -12.52 16 4 N -0.55 -10.24 1.52 -120.59 -0.18 -10.42 16 5 C 0.10 1.66 10.10 59.85 0.60 2.26 16 6 C 0.16 2.73 3.38 -83.46 -0.28 2.45 16 7 C -0.12 -1.61 9.51 -39.44 -0.38 -1.98 16 8 C -0.12 -1.30 10.03 -39.53 -0.40 -1.70 16 9 C -0.12 -1.44 10.02 -39.62 -0.40 -1.84 16 10 C -0.10 -1.55 9.54 -39.18 -0.37 -1.93 16 11 C -0.09 -1.76 5.89 -104.81 -0.62 -2.38 16 12 C 0.46 10.94 7.71 -12.53 -0.10 10.85 16 13 O -0.58 -15.62 12.69 5.25 0.07 -15.56 16 14 N -0.54 -13.52 5.23 -11.96 -0.06 -13.59 16 15 C -0.29 -7.89 9.68 -14.99 -0.15 -8.03 16 16 H 0.11 3.13 7.15 -52.49 -0.38 2.75 16 17 C 0.02 0.60 5.50 -17.45 -0.10 0.51 16 18 N -0.89 -23.13 13.05 55.50 0.72 -22.40 16 19 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H 0.08 1.10 6.08 -51.93 -0.32 0.79 16 24 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 25 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 26 H 0.07 1.36 7.18 -51.93 -0.37 0.99 16 27 H 0.07 1.24 7.35 -51.93 -0.38 0.86 16 28 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.13 2.06 6.40 -52.49 -0.34 1.72 16 33 H 0.39 9.24 5.92 -40.82 -0.24 9.00 16 34 H 0.28 6.73 8.31 -40.82 -0.34 6.40 16 LS Contribution 295.19 15.07 4.45 4.45 Total: -1.00 -32.39 295.19 -5.52 -37.91 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -3.69 Total: 10.30 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -1.89 Total: 6.37 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.48 Total: -46.41 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: 0.16 Total: -28.08 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.39 -5.52 -37.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701338097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.879 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds