Wall clock time and date at job start Mon Mar 30 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21276 * 120.00369 * 2 1 4 4 N 1.34780 * 119.99671 * 179.97438 * 2 1 3 5 5 C 1.46501 * 120.00071 * 185.09254 * 4 2 1 6 6 C 1.39292 * 119.99891 * 5.09427 * 4 2 1 7 7 C 1.38823 * 120.16974 * 270.27204 * 6 4 2 8 8 C 1.38046 * 120.07457 * 180.31783 * 7 6 4 9 9 C 1.38578 * 120.41833 * 359.68326 * 8 7 6 10 10 C 1.37787 * 120.33267 * 0.02562 * 9 8 7 11 11 C 1.39746 * 119.91790 * 359.97438 * 10 9 8 12 12 C 1.47406 * 120.20353 * 180.02562 * 11 10 9 13 13 O 1.21632 * 119.99712 * 180.02562 * 12 11 10 14 14 N 1.34773 * 120.00058 * 0.02562 * 12 11 10 15 15 C 1.36897 * 119.99764 * 179.72154 * 14 12 11 16 16 H 1.07994 * 120.00426 * 0.28488 * 15 14 12 17 17 C 1.39034 * 119.99705 * 180.27348 * 15 14 12 18 18 N 1.31378 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99928 * 180.02562 * 17 15 14 20 20 H 1.48509 * 109.47138 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46880 * 119.99918 * 19 17 15 22 22 H 1.48490 * 109.47377 * 240.00704 * 19 17 15 23 23 H 1.08998 * 109.47188 * 185.03878 * 1 2 3 24 24 H 1.09008 * 109.46790 * 305.04200 * 1 2 3 25 25 H 1.09003 * 109.46779 * 65.03435 * 1 2 3 26 26 H 1.09007 * 109.47160 * 265.04569 * 5 4 2 27 27 H 1.09000 * 109.46976 * 25.04241 * 5 4 2 28 28 H 1.08992 * 109.47622 * 145.04511 * 5 4 2 29 29 H 1.08001 * 119.96482 * 0.02562 * 7 6 4 30 30 H 1.08000 * 119.78815 * 179.70157 * 8 7 6 31 31 H 1.08000 * 119.82895 * 180.02562 * 9 8 7 32 32 H 1.07996 * 120.03908 * 180.02562 * 10 9 8 33 33 H 0.96998 * 120.00171 * 0.02562 * 14 12 11 34 34 H 0.96994 * 119.99869 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6415 -1.1698 0.1131 6 6 1.4884 -2.3712 -0.1061 7 6 1.0444 -3.0241 1.0358 8 6 0.3641 -4.2204 0.9282 9 6 0.1132 -4.7755 -0.3165 10 6 0.5410 -4.1390 -1.4613 11 6 1.2309 -2.9272 -1.3686 12 6 1.6909 -2.2406 -2.5892 13 8 2.2915 -1.1863 -2.5042 14 7 1.4460 -2.7810 -3.7993 15 6 1.8682 -2.1404 -4.9331 16 1 2.4016 -1.2044 -4.8577 17 6 1.6106 -2.6950 -6.1817 18 7 0.9615 -3.8336 -6.2735 19 14 2.1873 -1.8214 -7.7288 20 1 2.8899 -0.5671 -7.3563 21 1 3.1162 -2.7044 -8.4788 22 1 1.0150 -1.4981 -8.5810 23 1 -0.3633 -1.0237 0.0903 24 1 -0.3633 0.5901 0.8415 25 1 -0.3633 0.4338 -0.9317 26 1 4.0827 -1.2141 -0.8827 27 1 3.9688 -0.2594 0.6153 28 1 3.9600 -2.0377 0.6905 29 1 1.2355 -2.5980 2.0096 30 1 0.0249 -4.7269 1.8198 31 1 -0.4202 -5.7117 -0.3897 32 1 0.3426 -4.5756 -2.4289 33 1 0.9667 -3.6216 -3.8671 34 1 0.7814 -4.2203 -7.1446 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701338097.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:21 Heat of formation + Delta-G solvation = -54.763610 kcal Electronic energy + Delta-G solvation = -19854.896289 eV Core-core repulsion = 16752.326405 eV Total energy + Delta-G solvation = -3102.569883 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.72012 -40.11262 -38.97041 -36.58723 -35.86343 -33.51195 -31.92411 -31.48200 -30.71485 -27.40390 -26.94159 -24.53349 -23.73903 -21.50644 -20.66834 -19.90428 -18.47214 -18.01754 -17.46646 -16.94475 -16.77740 -15.98973 -15.82317 -15.50212 -15.45763 -15.23479 -14.53205 -14.32013 -14.05939 -13.64005 -13.58176 -13.42229 -13.11653 -13.01488 -12.95094 -12.71163 -12.54759 -12.20119 -12.15409 -11.59897 -11.15883 -10.51621 -10.11914 -9.89920 -9.72788 -9.69430 -8.58140 -6.01597 -0.07077 0.31605 1.34241 1.37143 1.51134 1.56628 2.11138 2.14740 2.23545 2.80438 3.11169 3.27368 3.63573 3.94429 4.10424 4.22013 4.24826 4.41759 4.45764 4.49579 4.54221 4.61422 4.71199 4.88313 4.92243 4.98205 5.31540 5.35804 5.45658 5.52858 5.54531 5.89585 5.95700 6.48175 6.52483 7.03005 7.16083 7.44365 8.03379 8.59348 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.006865 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.627869 B = 4077.762619 C = 4979.151052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.520 3.480 3 O -0.595 6.595 4 N -0.554 5.554 5 C 0.097 3.903 6 C 0.148 3.852 7 C -0.113 4.113 8 C -0.081 4.081 9 C -0.104 4.104 10 C -0.101 4.101 11 C -0.131 4.131 12 C 0.461 3.539 13 O -0.619 6.619 14 N -0.556 5.556 15 C -0.331 4.331 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.909 5.909 19 Si 0.993 3.007 20 H -0.278 1.278 21 H -0.266 1.266 22 H -0.266 1.266 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.080 0.920 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.155 0.845 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.122 0.878 33 H 0.397 0.603 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -6.361 14.654 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.312 3.688 3 O -0.477 6.477 4 N -0.281 5.281 5 C -0.045 4.045 6 C 0.056 3.944 7 C -0.132 4.132 8 C -0.100 4.100 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.136 4.136 12 C 0.250 3.750 13 O -0.507 6.507 14 N -0.192 5.192 15 C -0.461 4.461 16 H 0.094 0.906 17 C -0.209 4.209 18 N -0.549 5.549 19 Si 0.816 3.184 20 H -0.203 1.203 21 H -0.191 1.191 22 H -0.191 1.191 23 H 0.109 0.891 24 H 0.138 0.862 25 H 0.098 0.902 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.172 0.828 30 H 0.193 0.807 31 H 0.182 0.818 32 H 0.140 0.860 33 H 0.232 0.768 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.164 -5.227 14.495 15.961 hybrid contribution 0.383 0.180 -1.590 1.645 sum -3.782 -5.047 12.905 14.364 Atomic orbital electron populations 1.21867 0.89447 1.05615 1.05303 1.21264 0.91858 0.82299 0.73338 1.90598 1.71988 1.32413 1.52675 1.44833 1.07362 1.04423 1.71529 1.21570 0.78885 1.03213 1.00835 1.17687 0.97105 0.87417 0.92160 1.21579 0.98473 0.96109 0.97071 1.21632 0.95694 0.93766 0.98907 1.21538 0.98724 1.00796 0.91151 1.21463 0.96734 0.93098 1.00750 1.20496 1.02669 0.97503 0.92922 1.18519 0.85361 0.86971 0.84128 1.90647 1.47304 1.25547 1.87166 1.41895 1.49896 1.22715 1.04655 1.19692 1.35212 1.06481 0.84720 0.90592 1.26061 0.96405 0.96750 1.01637 1.69631 1.39619 1.18344 1.27311 0.84875 0.78444 0.77986 0.77059 1.20313 1.19118 1.19122 0.89066 0.86157 0.90180 0.95297 0.90826 0.88752 0.82775 0.80676 0.81810 0.85961 0.76755 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 10.07 71.24 0.72 -4.26 16 2 C 0.52 20.81 6.81 87.66 0.60 21.41 16 3 O -0.60 -28.44 16.65 -3.02 -0.05 -28.49 16 4 N -0.55 -20.51 1.52 -653.82 -0.99 -21.51 16 5 C 0.10 3.44 10.10 127.77 1.29 4.73 16 6 C 0.15 4.74 3.38 38.61 0.13 4.87 16 7 C -0.11 -2.36 9.51 22.36 0.21 -2.15 16 8 C -0.08 -1.26 10.03 22.31 0.22 -1.04 16 9 C -0.10 -1.99 10.02 22.24 0.22 -1.77 16 10 C -0.10 -2.96 9.54 22.53 0.21 -2.75 16 11 C -0.13 -4.92 5.89 -19.99 -0.12 -5.04 16 12 C 0.46 23.14 7.71 86.66 0.67 23.81 16 13 O -0.62 -35.69 12.69 -4.13 -0.05 -35.74 16 14 N -0.56 -29.31 5.23 -310.00 -1.62 -30.93 16 15 C -0.33 -19.20 9.68 84.09 0.81 -18.39 16 16 H 0.08 4.78 7.15 -2.91 -0.02 4.76 16 17 C -0.01 -0.39 5.50 84.95 0.47 0.08 16 18 N -0.91 -48.25 13.05 21.68 0.28 -47.97 16 19 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H 0.09 2.45 6.08 -2.39 -0.01 2.43 16 24 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.03 1.23 7.18 -2.38 -0.02 1.21 16 27 H 0.07 2.56 7.35 -2.39 -0.02 2.55 16 28 H 0.09 2.56 8.09 -2.39 -0.02 2.55 16 29 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 31 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.12 3.78 6.40 -2.91 -0.02 3.76 16 33 H 0.40 19.58 5.92 -92.71 -0.55 19.03 16 34 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -77.57 295.19 5.62 -71.95 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.58 Total: 27.93 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 5.44 Total: 19.50 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -2.33 Total: -100.41 kcal Atomic # 8 Polarization: -64.13 SS G_CDS: -0.10 Total: -64.23 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.57 5.62 -71.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701338097.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.182 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds