Wall clock time and date at job start Mon Mar 30 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47056 * 2 1 4 4 C 1.36939 * 119.99858 * 264.51285 * 3 2 1 5 5 H 1.08002 * 119.99779 * 146.57009 * 4 3 2 6 6 C 1.38807 * 119.99792 * 326.56322 * 4 3 2 7 7 N 1.31626 * 120.00480 * 337.29226 * 6 4 3 8 8 Si 1.86806 * 119.99870 * 157.29001 * 6 4 3 9 9 H 1.48498 * 109.47049 * 89.99973 * 8 6 4 10 10 H 1.48496 * 109.47185 * 210.00303 * 8 6 4 11 11 H 1.48501 * 109.46681 * 330.00160 * 8 6 4 12 12 C 1.46499 * 120.00051 * 84.51166 * 3 2 1 13 13 H 1.09004 * 110.88665 * 3.87610 * 12 3 2 14 14 C 1.55400 * 111.07276 * 127.66132 * 12 3 2 15 15 C 1.54318 * 102.83145 * 153.48796 * 14 12 3 16 16 N 1.47030 * 107.39859 * 337.97603 * 15 14 12 17 17 S 1.65603 * 125.64355 * 178.89862 * 16 15 14 18 18 C 1.81399 * 104.45044 * 89.98050 * 17 16 15 19 19 O 1.42108 * 104.27407 * 206.04944 * 17 16 15 20 20 O 1.42101 * 104.28046 * 333.90182 * 17 16 15 21 21 C 1.47419 * 108.70262 * 358.86636 * 16 15 14 22 22 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47429 * 300.00213 * 1 2 3 24 24 H 1.09000 * 109.46873 * 60.00007 * 1 2 3 25 25 H 1.08998 * 109.46933 * 240.00125 * 2 1 3 26 26 H 1.09000 * 109.46873 * 119.99993 * 2 1 3 27 27 H 0.96996 * 119.99540 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.69228 * 35.19950 * 14 12 3 29 29 H 1.09002 * 110.85123 * 271.85440 * 14 12 3 30 30 H 1.09000 * 109.88410 * 218.48413 * 15 14 12 31 31 H 1.08998 * 109.88282 * 97.47048 * 15 14 12 32 32 H 1.08998 * 109.47272 * 59.99256 * 18 17 16 33 33 H 1.08994 * 109.47328 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46669 * 299.99342 * 18 17 16 35 35 H 1.09001 * 110.36794 * 142.97023 * 21 16 15 36 36 H 1.09001 * 110.36262 * 265.28337 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3535 1.9890 -1.1805 5 1 2.1922 3.0494 -1.3068 6 6 2.9006 1.2421 -2.2147 7 7 3.5059 0.1025 -1.9549 8 14 2.7779 1.8543 -3.9753 9 1 3.9600 2.6962 -4.2902 10 1 2.7359 0.6940 -4.9011 11 1 1.5403 2.6594 -4.1342 12 6 2.1481 2.1123 1.2629 13 1 1.9080 1.4700 2.1102 14 6 3.5706 2.7195 1.4134 15 6 3.3296 3.9326 2.3363 16 7 1.9085 4.2934 2.2260 17 16 1.1574 5.5192 3.0481 18 6 1.3360 6.9650 1.9673 19 8 -0.2026 5.1130 3.1170 20 8 1.9349 5.6785 4.2269 21 6 1.2633 3.3838 1.2619 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8878 -0.4195 -2.6778 28 1 3.9563 3.0416 0.4461 29 1 4.2491 2.0069 1.8824 30 1 3.9504 4.7700 2.0177 31 1 3.5658 3.6671 3.3667 32 1 0.8566 6.7639 1.0093 33 1 0.8648 7.8291 2.4356 34 1 2.3944 7.1708 1.8078 35 1 0.2514 3.1421 1.5870 36 1 1.2463 3.8334 0.2691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701655766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:16 Heat of formation + Delta-G solvation = -43.773713 kcal Electronic energy + Delta-G solvation = -18988.706027 eV Core-core repulsion = 16022.056652 eV Total energy + Delta-G solvation = -2966.649374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.18388 -36.97755 -35.82150 -35.14839 -31.51110 -30.37917 -29.44081 -28.83287 -27.13717 -24.25477 -21.90229 -21.11063 -19.75781 -18.66285 -17.48059 -16.43785 -16.39920 -15.65801 -15.28633 -14.55498 -13.96812 -13.62455 -13.35777 -13.25809 -12.98844 -12.81252 -12.59077 -12.34509 -12.00842 -11.94536 -11.87760 -11.46595 -11.27334 -11.06613 -10.93515 -10.85198 -10.70925 -10.47230 -10.29807 -9.99497 -9.69457 -9.54699 -8.58431 -8.49852 -6.66974 -5.85753 -3.38477 0.35532 2.80574 3.30493 3.39641 3.42000 3.97408 4.18651 4.41690 4.72559 4.91773 5.11183 5.24020 5.41384 5.57191 5.63615 5.72901 5.87083 6.08906 6.19708 6.30575 6.36730 6.49734 6.56897 6.61480 6.69296 6.78461 6.86456 6.87881 7.12485 7.25605 7.71267 7.76156 8.43629 9.12717 9.76568 10.32007 11.15203 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.006283 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.963148 B = 4455.217562 C = 4740.627625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.138 3.862 3 N -0.572 5.572 4 C -0.256 4.256 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.287 1.287 10 H -0.289 1.289 11 H -0.279 1.279 12 C 0.170 3.830 13 H 0.065 0.935 14 C -0.136 4.136 15 C 0.124 3.876 16 N -1.009 6.009 17 S 2.628 3.372 18 C -0.677 4.677 19 O -0.958 6.958 20 O -0.962 6.962 21 C 0.099 3.901 22 H 0.034 0.966 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.021 0.979 27 H 0.255 0.745 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 8.465 6.030 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.291 5.291 4 C -0.386 4.386 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.060 3.940 13 H 0.083 0.917 14 C -0.177 4.177 15 C -0.002 4.002 16 N -0.849 5.849 17 S 2.721 3.279 18 C -0.826 4.826 19 O -0.948 6.948 20 O -0.953 6.953 21 C -0.028 4.028 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.118 0.882 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.546 8.333 6.783 11.042 hybrid contribution 0.209 0.766 -1.641 1.823 sum -2.337 9.099 5.142 10.709 Atomic orbital electron populations 1.22358 1.00785 0.98839 1.00524 1.21007 0.89784 0.86005 1.01953 1.43857 1.73251 1.11294 1.00740 1.18918 1.35629 0.93998 0.90007 0.91892 1.25062 0.96955 0.97828 0.99062 1.70003 1.35952 1.15636 1.31181 0.86442 0.78045 0.77955 0.85166 1.21390 1.21506 1.20393 1.21476 0.91582 0.91045 0.89929 0.91690 1.23059 0.99869 0.95057 0.99708 1.21702 0.79860 0.98376 1.00241 1.58399 1.19968 1.46305 1.60232 1.04295 0.73677 0.75187 0.74712 1.30612 1.11534 1.22105 1.18325 1.93589 1.34519 1.80263 1.86454 1.93572 1.71434 1.86455 1.43821 1.22711 0.97125 0.91775 0.91163 0.94669 0.94723 0.93225 0.88180 0.96068 0.93510 0.89240 0.91406 0.92795 0.91877 0.85377 0.85989 0.85601 0.91061 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.23 37.16 0.38 -2.85 16 2 C 0.14 3.10 5.93 -4.04 -0.02 3.07 16 3 N -0.57 -13.05 2.54 -163.08 -0.41 -13.46 16 4 C -0.26 -6.33 7.81 -15.06 -0.12 -6.45 16 5 H 0.06 1.54 6.77 -52.49 -0.36 1.18 16 6 C 0.01 0.28 4.91 -17.43 -0.09 0.20 16 7 N -0.89 -23.99 11.34 55.49 0.63 -23.36 16 8 Si 0.89 20.41 29.61 -169.99 -5.03 15.38 16 9 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.17 3.31 3.59 -65.65 -0.24 3.08 16 13 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 14 C -0.14 -2.43 6.50 -24.77 -0.16 -2.59 16 15 C 0.12 1.85 6.89 -3.06 -0.02 1.83 16 16 N -1.01 -15.37 3.62 -111.42 -0.40 -15.78 16 17 S 2.63 35.76 6.29 -107.50 -0.68 35.09 16 18 C -0.68 -6.49 10.99 101.05 1.11 -5.37 16 19 O -0.96 -16.08 17.28 -57.54 -0.99 -17.07 16 20 O -0.96 -15.43 17.60 -57.54 -1.01 -16.44 16 21 C 0.10 1.74 6.66 -2.53 -0.02 1.72 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.10 2.54 5.33 -51.93 -0.28 2.27 16 26 H 0.02 0.45 8.04 -51.93 -0.42 0.04 16 27 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 28 H 0.09 1.78 7.07 -51.93 -0.37 1.41 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.07 1.26 7.67 -51.93 -0.40 0.86 16 36 H 0.07 1.29 6.61 -51.93 -0.34 0.95 16 LS Contribution 304.13 15.07 4.58 4.58 Total: -1.00 -30.49 304.13 -8.00 -38.49 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.51 Total: -0.07 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 0.83 Total: -7.36 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.19 Total: -52.60 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -2.01 Total: -33.51 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Atomic # 16 Polarization: 35.76 SS G_CDS: -0.68 Total: 35.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.49 -8.00 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.284 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds