Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.47056 * 2 1 4 4 C 1.36939 * 119.99858 * 264.51285 * 3 2 1 5 5 H 1.08002 * 119.99779 * 146.57009 * 4 3 2 6 6 C 1.38807 * 119.99792 * 326.56322 * 4 3 2 7 7 N 1.31626 * 120.00480 * 337.29226 * 6 4 3 8 8 Si 1.86806 * 119.99870 * 157.29001 * 6 4 3 9 9 H 1.48498 * 109.47049 * 89.99973 * 8 6 4 10 10 H 1.48496 * 109.47185 * 210.00303 * 8 6 4 11 11 H 1.48501 * 109.46681 * 330.00160 * 8 6 4 12 12 C 1.46499 * 120.00051 * 84.51166 * 3 2 1 13 13 H 1.09004 * 110.88665 * 3.87610 * 12 3 2 14 14 C 1.55400 * 111.07276 * 127.66132 * 12 3 2 15 15 C 1.54318 * 102.83145 * 153.48796 * 14 12 3 16 16 N 1.47030 * 107.39859 * 337.97603 * 15 14 12 17 17 S 1.65603 * 125.64355 * 178.89862 * 16 15 14 18 18 C 1.81399 * 104.45044 * 89.98050 * 17 16 15 19 19 O 1.42108 * 104.27407 * 206.04944 * 17 16 15 20 20 O 1.42101 * 104.28046 * 333.90182 * 17 16 15 21 21 C 1.47419 * 108.70262 * 358.86636 * 16 15 14 22 22 H 1.08993 * 109.47378 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47429 * 300.00213 * 1 2 3 24 24 H 1.09000 * 109.46873 * 60.00007 * 1 2 3 25 25 H 1.08998 * 109.46933 * 240.00125 * 2 1 3 26 26 H 1.09000 * 109.46873 * 119.99993 * 2 1 3 27 27 H 0.96996 * 119.99540 * 179.97438 * 7 6 4 28 28 H 1.09001 * 110.69228 * 35.19950 * 14 12 3 29 29 H 1.09002 * 110.85123 * 271.85440 * 14 12 3 30 30 H 1.09000 * 109.88410 * 218.48413 * 15 14 12 31 31 H 1.08998 * 109.88282 * 97.47048 * 15 14 12 32 32 H 1.08998 * 109.47272 * 59.99256 * 18 17 16 33 33 H 1.08994 * 109.47328 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46669 * 299.99342 * 18 17 16 35 35 H 1.09001 * 110.36794 * 142.97023 * 21 16 15 36 36 H 1.09001 * 110.36262 * 265.28337 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3535 1.9890 -1.1805 5 1 2.1922 3.0494 -1.3068 6 6 2.9006 1.2421 -2.2147 7 7 3.5059 0.1025 -1.9549 8 14 2.7779 1.8543 -3.9753 9 1 3.9600 2.6962 -4.2902 10 1 2.7359 0.6940 -4.9011 11 1 1.5403 2.6594 -4.1342 12 6 2.1481 2.1123 1.2629 13 1 1.9080 1.4700 2.1102 14 6 3.5706 2.7195 1.4134 15 6 3.3296 3.9326 2.3363 16 7 1.9085 4.2934 2.2260 17 16 1.1574 5.5192 3.0481 18 6 1.3360 6.9650 1.9673 19 8 -0.2026 5.1130 3.1170 20 8 1.9349 5.6785 4.2269 21 6 1.2633 3.3838 1.2619 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8878 -0.4195 -2.6778 28 1 3.9563 3.0416 0.4461 29 1 4.2491 2.0069 1.8824 30 1 3.9504 4.7700 2.0177 31 1 3.5658 3.6671 3.3667 32 1 0.8566 6.7639 1.0093 33 1 0.8648 7.8291 2.4356 34 1 2.3944 7.1708 1.8078 35 1 0.2514 3.1421 1.5870 36 1 1.2463 3.8334 0.2691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701655766.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = -65.225614 kcal Electronic energy + Delta-G solvation = -18989.636251 eV Core-core repulsion = 16022.056652 eV Total energy + Delta-G solvation = -2967.579599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63317 -38.15343 -37.00895 -36.79096 -33.36616 -31.87891 -30.37341 -30.17815 -28.73668 -26.04918 -23.27105 -22.70606 -21.42538 -19.81694 -18.72235 -18.14308 -17.60837 -16.88132 -16.78184 -16.23825 -15.62216 -15.11871 -14.54752 -14.31932 -14.16449 -14.03907 -13.90307 -13.82119 -13.57011 -13.20326 -13.15404 -13.10626 -12.77400 -12.64339 -12.55467 -12.34228 -12.05535 -11.98764 -11.94503 -11.72340 -11.40848 -11.19632 -10.39890 -9.81786 -8.52546 -7.77002 -5.31974 -0.68704 1.48921 1.54062 1.60954 1.68449 2.55598 2.96864 3.11288 3.31346 3.59114 3.91370 4.05323 4.09130 4.25067 4.38980 4.51605 4.61434 4.70502 4.77254 4.91184 4.94665 4.97219 5.02982 5.16505 5.20313 5.27399 5.42253 5.47613 5.54235 5.63072 5.77316 5.91844 6.52660 7.23117 7.93486 8.44857 9.21368 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.006283 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.963148 B = 4455.217562 C = 4740.627625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 N -0.586 5.586 4 C -0.247 4.247 5 H 0.067 0.933 6 C -0.039 4.039 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.286 1.286 10 H -0.298 1.298 11 H -0.273 1.273 12 C 0.158 3.842 13 H 0.065 0.935 14 C -0.130 4.130 15 C 0.128 3.872 16 N -1.014 6.014 17 S 2.633 3.367 18 C -0.650 4.650 19 O -0.995 6.995 20 O -0.989 6.989 21 C 0.112 3.888 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.249 0.751 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.067 0.933 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 10.695 6.211 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 N -0.306 5.306 4 C -0.377 4.377 5 H 0.084 0.916 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.213 1.213 10 H -0.225 1.225 11 H -0.198 1.198 12 C 0.049 3.951 13 H 0.084 0.916 14 C -0.171 4.171 15 C 0.002 3.998 16 N -0.852 5.852 17 S 2.731 3.269 18 C -0.804 4.804 19 O -0.986 6.986 20 O -0.980 6.980 21 C -0.015 4.015 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.928 10.546 7.011 12.998 hybrid contribution 0.314 0.147 -1.616 1.653 sum -2.614 10.693 5.395 12.259 Atomic orbital electron populations 1.22173 0.98427 1.00162 1.00320 1.20935 0.91645 0.85914 1.00521 1.44015 1.73658 1.11487 1.01478 1.19142 1.33768 0.94101 0.90679 0.91566 1.25660 0.97579 0.98326 1.01957 1.70130 1.37737 1.16938 1.31510 0.85566 0.78006 0.77037 0.81529 1.21282 1.22453 1.19762 1.21670 0.93221 0.91737 0.88514 0.91644 1.22910 0.98563 0.96307 0.99338 1.21688 0.80200 0.98054 0.99840 1.58367 1.19768 1.47359 1.59756 1.04010 0.72288 0.75888 0.74692 1.30352 1.13635 1.19256 1.17166 1.93542 1.36308 1.81593 1.87169 1.93538 1.71618 1.86964 1.45899 1.22359 0.96500 0.91178 0.91503 0.92622 0.93749 0.94406 0.91122 0.96027 0.94192 0.91411 0.91643 0.89946 0.91232 0.84209 0.83135 0.83475 0.91493 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 10.23 71.98 0.74 -5.07 16 2 C 0.14 6.14 5.93 86.38 0.51 6.66 16 3 N -0.59 -26.83 2.54 -669.86 -1.70 -28.53 16 4 C -0.25 -12.19 7.81 84.03 0.66 -11.54 16 5 H 0.07 3.18 6.77 -2.91 -0.02 3.16 16 6 C -0.04 -2.00 4.91 84.86 0.42 -1.58 16 7 N -0.92 -50.91 11.34 21.65 0.25 -50.67 16 8 Si 0.95 42.18 29.61 68.60 2.03 44.21 16 9 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 10 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 C 0.16 6.09 3.59 46.47 0.17 6.26 16 13 H 0.07 2.48 7.93 -2.38 -0.02 2.46 16 14 C -0.13 -4.57 6.50 31.87 0.21 -4.36 16 15 C 0.13 3.55 6.89 86.73 0.60 4.14 16 16 N -1.01 -28.94 3.62 -506.44 -1.83 -30.77 16 17 S 2.63 65.62 6.29 -56.49 -0.36 65.27 16 18 C -0.65 -9.47 10.99 113.37 1.25 -8.22 16 19 O -1.00 -32.10 17.28 -127.65 -2.21 -34.30 16 20 O -0.99 -29.75 17.60 -127.65 -2.25 -32.00 16 21 C 0.11 3.81 6.66 86.85 0.58 4.39 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 3.68 5.33 -2.39 -0.01 3.67 16 26 H 0.02 0.94 8.04 -2.39 -0.02 0.92 16 27 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 28 H 0.07 2.67 7.07 -2.39 -0.02 2.66 16 29 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.32 7.67 -2.39 -0.02 2.30 16 36 H 0.07 2.33 6.61 -2.39 -0.02 2.32 16 Total: -1.00 -65.82 304.13 0.11 -65.71 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.05 Total: 10.41 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 5.12 Total: -9.33 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.29 Total: -109.97 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -4.45 Total: -66.30 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: 65.62 SS G_CDS: -0.36 Total: 65.27 kcal Total: -65.82 0.11 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701655766.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.486 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds