Wall clock time and date at job start Mon Mar 30 2020 05:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.47479 * 111.00009 * 155.96866 * 13 2 1 15 15 C 1.53507 * 87.93539 * 221.29824 * 14 13 2 16 16 N 1.46492 * 114.17146 * 139.67099 * 15 14 13 17 17 S 1.65608 * 120.00030 * 121.15990 * 16 15 14 18 18 C 1.81400 * 104.44465 * 65.00307 * 17 16 15 19 19 O 1.42099 * 104.27675 * 181.06982 * 17 16 15 20 20 O 1.42101 * 104.27555 * 308.93035 * 17 16 15 21 21 C 1.47480 * 110.99627 * 60.00363 * 13 2 1 22 22 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 24 24 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 25 25 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 26 26 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 27 27 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 28 28 H 1.09001 * 113.47832 * 336.06856 * 14 13 2 29 29 H 1.09002 * 113.47377 * 106.52829 * 14 13 2 30 30 H 1.09002 * 114.17159 * 272.38253 * 15 14 13 31 31 H 0.97000 * 120.00068 * 301.16114 * 16 15 14 32 32 H 1.08995 * 109.47682 * 60.00285 * 18 17 16 33 33 H 1.09011 * 109.46602 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47209 * 299.99551 * 18 17 16 35 35 H 1.09003 * 113.47041 * 253.46704 * 21 13 2 36 36 H 1.09000 * 113.48095 * 23.87164 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4846 0.3695 2.4971 11 1 6.5871 -1.7615 3.6490 12 1 6.6845 -1.6865 1.2268 13 7 2.0196 -0.6925 -1.1995 14 6 3.3814 -0.2465 -1.5484 15 6 2.9446 -0.2469 -3.0200 16 7 3.4538 0.8857 -3.7971 17 16 4.3916 0.6168 -5.1354 18 6 3.2857 -0.2248 -6.3012 19 8 4.7137 1.9187 -5.6049 20 8 5.4049 -0.2697 -4.6807 21 6 1.5468 -0.0236 -2.4259 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -1.7715 1.2055 26 1 1.6054 -0.2619 2.1370 27 1 4.0610 -2.2456 4.0342 28 1 3.6243 0.7456 -1.1678 29 1 4.1510 -0.9849 -1.3237 30 1 3.0681 -1.2065 -3.5220 31 1 3.2418 1.7931 -3.5279 32 1 2.4344 0.4185 -6.5236 33 1 3.8265 -0.4425 -7.2224 34 1 2.9317 -1.1559 -5.8587 35 1 0.7615 -0.5733 -2.9449 36 1 1.2990 1.0277 -2.2792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703117701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:05 Heat of formation + Delta-G solvation = -36.027228 kcal Electronic energy + Delta-G solvation = -18491.237107 eV Core-core repulsion = 15524.923645 eV Total energy + Delta-G solvation = -2966.313462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.00116 -37.15747 -36.01794 -34.92319 -32.89829 -31.57559 -29.68817 -27.80318 -25.90881 -25.02021 -23.02702 -20.30699 -19.92777 -19.16233 -17.70862 -16.69103 -16.30456 -15.99738 -15.45143 -15.18724 -14.45473 -14.00961 -13.76263 -13.45458 -13.38117 -13.11677 -12.35068 -12.18928 -12.17281 -12.04605 -11.87610 -11.80872 -11.63056 -11.32795 -11.19136 -11.02676 -10.82323 -10.45595 -10.22916 -10.21182 -9.42491 -9.10744 -8.84767 -8.32715 -8.21109 -5.94977 -3.95843 0.14877 2.60134 3.37597 3.41763 3.45440 3.68012 4.06923 4.42420 4.50598 4.57452 4.71719 4.76892 4.90276 5.24218 5.39925 5.42474 5.53180 5.69541 5.78885 5.83475 5.89455 6.10663 6.31267 6.41525 6.52149 6.67108 6.82211 6.89261 7.14103 7.47359 7.68722 7.99562 8.04330 8.44966 9.08168 9.67275 11.16531 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.005943 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.550087 B = 4710.497851 C = 5729.136316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 H 0.037 0.963 4 C 0.033 3.967 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.447 5.447 14 C 0.015 3.985 15 C 0.108 3.892 16 N -1.103 6.103 17 S 2.611 3.389 18 C -0.674 4.674 19 O -0.966 6.966 20 O -0.951 6.951 21 C -0.015 4.015 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.026 0.974 26 H 0.018 0.982 27 H 0.259 0.741 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.417 0.583 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.082 0.918 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 4.268 -17.502 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 H 0.055 0.945 4 C -0.004 4.004 5 C -0.557 4.557 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.170 5.170 14 C -0.115 4.115 15 C 0.000 4.000 16 N -0.861 5.861 17 S 2.702 3.298 18 C -0.824 4.824 19 O -0.956 6.956 20 O -0.941 6.941 21 C -0.146 4.146 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.252 0.748 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.812 3.508 -17.343 18.100 hybrid contribution 0.364 0.998 0.103 1.067 sum -3.449 4.506 -17.240 18.150 Atomic orbital electron populations 1.21870 0.96220 1.01775 1.00218 1.22388 0.93492 0.96050 0.93653 0.94529 1.19083 0.95759 0.96041 0.89493 1.21337 0.92151 1.34148 1.08025 0.92125 1.24968 0.98006 0.95437 0.95817 1.69956 1.35447 1.36049 1.12120 0.86768 0.86261 0.78150 0.77521 1.20427 1.21390 1.20025 1.68977 1.03716 1.44131 1.00217 1.24194 0.94919 1.01489 0.90936 1.22698 0.95609 0.88478 0.93230 1.55541 1.71998 1.14888 1.43711 1.04820 0.75214 0.74843 0.74879 1.30557 1.18216 1.15479 1.18115 1.93604 1.82802 1.37726 1.81512 1.93656 1.53720 1.68070 1.78615 1.24256 0.96550 0.99093 0.94713 0.92321 0.92648 0.94224 0.95568 0.96359 0.93086 0.90808 0.88472 0.86134 0.74803 0.85367 0.85609 0.85271 0.89994 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.09 37.16 0.34 -2.01 16 2 C 0.05 1.04 1.97 -67.71 -0.13 0.90 16 3 H 0.04 0.72 7.52 -51.93 -0.39 0.33 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.52 -14.13 8.28 -34.44 -0.29 -14.42 16 6 H 0.06 1.57 4.88 -52.49 -0.26 1.32 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.45 -7.97 6.12 -236.64 -1.45 -9.42 16 14 C 0.02 0.27 5.12 -7.56 -0.04 0.23 16 15 C 0.11 1.35 4.57 -67.72 -0.31 1.04 16 16 N -1.10 -11.46 5.71 -4.66 -0.03 -11.49 16 17 S 2.61 26.95 6.05 -107.50 -0.65 26.30 16 18 C -0.67 -4.14 10.89 101.05 1.10 -3.04 16 19 O -0.97 -12.85 18.08 -57.54 -1.04 -13.89 16 20 O -0.95 -14.07 17.82 -57.54 -1.03 -15.10 16 21 C -0.01 -0.19 6.25 -7.56 -0.05 -0.24 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.54 7.03 -51.93 -0.37 0.18 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.07 1.32 6.93 -51.93 -0.36 0.96 16 29 H 0.10 1.93 7.76 -51.93 -0.40 1.52 16 30 H 0.12 1.31 7.84 -51.93 -0.41 0.90 16 31 H 0.42 3.82 8.91 -34.48 -0.31 3.51 16 32 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.13 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.80 7.66 -51.93 -0.40 0.41 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -35.35 305.94 -8.86 -44.21 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.39 Total: -0.67 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 0.40 Total: -15.25 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.74 Total: -47.05 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -2.07 Total: -28.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 26.95 SS G_CDS: -0.65 Total: 26.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.35 -8.86 -44.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703117701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.180 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds