Wall clock time and date at job start Mon Mar 30 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47159 * 2 1 4 4 C 1.52997 * 109.47153 * 120.00132 * 2 1 3 5 5 C 1.50706 * 109.47238 * 184.99569 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 N 1.46903 * 109.46949 * 240.00042 * 2 1 3 14 14 C 1.47479 * 111.00009 * 155.96866 * 13 2 1 15 15 C 1.53507 * 87.93539 * 221.29824 * 14 13 2 16 16 N 1.46492 * 114.17146 * 139.67099 * 15 14 13 17 17 S 1.65608 * 120.00030 * 121.15990 * 16 15 14 18 18 C 1.81400 * 104.44465 * 65.00307 * 17 16 15 19 19 O 1.42099 * 104.27675 * 181.06982 * 17 16 15 20 20 O 1.42101 * 104.27555 * 308.93035 * 17 16 15 21 21 C 1.47480 * 110.99627 * 60.00363 * 13 2 1 22 22 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46634 * 299.99965 * 1 2 3 24 24 H 1.09000 * 109.47090 * 59.99702 * 1 2 3 25 25 H 1.09001 * 109.46832 * 64.99883 * 4 2 1 26 26 H 1.09000 * 109.47611 * 305.00180 * 4 2 1 27 27 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 28 28 H 1.09001 * 113.47832 * 336.06856 * 14 13 2 29 29 H 1.09002 * 113.47377 * 106.52829 * 14 13 2 30 30 H 1.09002 * 114.17159 * 272.38253 * 15 14 13 31 31 H 0.97000 * 120.00068 * 301.16114 * 16 15 14 32 32 H 1.08995 * 109.47682 * 60.00285 * 18 17 16 33 33 H 1.09011 * 109.46602 * 179.97438 * 18 17 16 34 34 H 1.08994 * 109.47209 * 299.99551 * 18 17 16 35 35 H 1.09003 * 113.47041 * 253.46704 * 21 13 2 36 36 H 1.09000 * 113.48095 * 23.87164 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2305 -1.1936 2.3576 8 7 3.5765 -1.8388 3.2988 9 14 6.0921 -1.0613 2.4366 10 1 6.4846 0.3695 2.4971 11 1 6.5871 -1.7615 3.6490 12 1 6.6845 -1.6865 1.2268 13 7 2.0196 -0.6925 -1.1995 14 6 3.3814 -0.2465 -1.5484 15 6 2.9446 -0.2469 -3.0200 16 7 3.4538 0.8857 -3.7971 17 16 4.3916 0.6168 -5.1354 18 6 3.2857 -0.2248 -6.3012 19 8 4.7137 1.9187 -5.6049 20 8 5.4049 -0.2697 -4.6807 21 6 1.5468 -0.0236 -2.4259 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -1.7715 1.2055 26 1 1.6054 -0.2619 2.1370 27 1 4.0610 -2.2456 4.0342 28 1 3.6243 0.7456 -1.1678 29 1 4.1510 -0.9849 -1.3237 30 1 3.0681 -1.2065 -3.5220 31 1 3.2418 1.7931 -3.5279 32 1 2.4344 0.4185 -6.5236 33 1 3.8265 -0.4425 -7.2224 34 1 2.9317 -1.1559 -5.8587 35 1 0.7615 -0.5733 -2.9449 36 1 1.2990 1.0277 -2.2792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703117701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:04 Heat of formation + Delta-G solvation = -67.242517 kcal Electronic energy + Delta-G solvation = -18492.590703 eV Core-core repulsion = 15524.923645 eV Total energy + Delta-G solvation = -2967.667058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25778 -38.10264 -36.96665 -36.33677 -34.64710 -33.07528 -30.22192 -29.62796 -27.15906 -26.31956 -24.96098 -21.57617 -21.12307 -20.25896 -18.67227 -18.38024 -17.40371 -17.15293 -16.82375 -16.48811 -16.05938 -15.36447 -14.90927 -14.69321 -14.00304 -13.92983 -13.82544 -13.51796 -13.34378 -13.23580 -13.15073 -13.12829 -13.03857 -12.86756 -12.62604 -12.57600 -12.35687 -11.97675 -11.91073 -11.57453 -10.99294 -10.94585 -10.52940 -10.17584 -9.60759 -8.15229 -6.21533 -0.61968 1.37557 1.39767 1.46576 1.77454 2.41505 2.92369 3.16447 3.26679 3.36945 3.58163 3.90942 4.02776 4.14205 4.27193 4.31422 4.37872 4.51728 4.63964 4.69574 4.86142 4.98417 5.00578 5.09059 5.20578 5.28886 5.36688 5.54131 5.58642 5.68810 5.91155 6.09682 6.28904 6.41598 6.93042 7.45409 8.96966 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021393 B = 0.005943 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.550087 B = 4710.497851 C = 5729.136316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.034 0.966 4 C 0.037 3.963 5 C -0.524 4.524 6 H 0.070 0.930 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.472 5.472 14 C -0.004 4.004 15 C 0.131 3.869 16 N -1.100 6.100 17 S 2.614 3.386 18 C -0.645 4.645 19 O -1.001 7.001 20 O -1.006 7.006 21 C -0.004 4.004 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.076 0.924 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.260 0.740 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.142 0.858 31 H 0.423 0.577 32 H 0.155 0.845 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.675 4.786 -20.386 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.048 4.048 3 H 0.052 0.948 4 C 0.000 4.000 5 C -0.562 4.562 6 H 0.088 0.912 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.195 5.195 14 C -0.135 4.135 15 C 0.022 3.978 16 N -0.857 5.857 17 S 2.711 3.289 18 C -0.799 4.799 19 O -0.991 6.991 20 O -0.996 6.996 21 C -0.134 4.134 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.259 0.741 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.131 0.869 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.833 4.071 -20.210 21.175 hybrid contribution 0.647 0.819 0.926 1.395 sum -4.186 4.890 -19.285 20.331 Atomic orbital electron populations 1.21785 0.93465 1.01944 1.02015 1.22134 0.95661 0.94893 0.92162 0.94777 1.18955 0.94893 0.94461 0.91689 1.21809 0.93548 1.33138 1.07723 0.91234 1.25813 1.02557 0.95456 0.95753 1.70091 1.37162 1.37469 1.12924 0.85775 0.80957 0.78494 0.77505 1.19461 1.21022 1.19681 1.68858 1.04195 1.45154 1.01297 1.24225 0.94194 0.99688 0.95395 1.22477 0.94625 0.89993 0.90669 1.55358 1.71511 1.14754 1.44087 1.04497 0.75330 0.73902 0.75199 1.30290 1.17334 1.15782 1.16539 1.93558 1.83889 1.39847 1.81851 1.93593 1.57118 1.68786 1.80061 1.24315 0.97301 1.00029 0.91775 0.92940 0.92771 0.90498 0.98907 0.99114 0.93168 0.91925 0.92107 0.84093 0.74141 0.82648 0.83593 0.83372 0.86883 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.09 71.98 0.65 -3.52 16 2 C 0.06 2.36 1.97 44.91 0.09 2.45 16 3 H 0.03 1.34 7.52 -2.39 -0.02 1.32 16 4 C 0.04 1.96 4.65 29.85 0.14 2.10 16 5 C -0.52 -29.48 8.28 25.60 0.21 -29.27 16 6 H 0.07 3.71 4.88 -2.91 -0.01 3.70 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 9 Si 0.95 45.90 29.54 68.60 2.03 47.92 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.47 -16.34 6.12 -902.58 -5.52 -21.86 16 14 C 0.00 -0.13 5.12 83.57 0.43 0.30 16 15 C 0.13 2.96 4.57 45.45 0.21 3.17 16 16 N -1.10 -20.35 5.71 -168.66 -0.96 -21.31 16 17 S 2.61 48.82 6.05 -56.49 -0.34 48.48 16 18 C -0.65 -4.71 10.89 113.37 1.23 -3.47 16 19 O -1.00 -25.36 18.08 -127.65 -2.31 -27.67 16 20 O -1.01 -29.22 17.82 -127.65 -2.27 -31.50 16 21 C 0.00 -0.08 6.25 83.57 0.52 0.44 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.08 1.82 7.03 -2.39 -0.02 1.80 16 25 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.06 2.27 6.93 -2.39 -0.02 2.25 16 29 H 0.06 2.50 7.76 -2.39 -0.02 2.48 16 30 H 0.14 2.62 7.84 -2.39 -0.02 2.60 16 31 H 0.42 6.86 8.91 -96.74 -0.86 6.00 16 32 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.15 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.15 0.70 7.92 -2.39 -0.02 0.69 16 35 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.62 7.66 -2.39 -0.02 1.60 16 Total: -1.00 -80.69 305.94 -4.94 -85.64 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.21 Total: 5.32 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: 3.95 Total: -27.28 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.20 Total: -100.91 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -4.58 Total: -59.17 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 48.82 SS G_CDS: -0.34 Total: 48.48 kcal Total: -80.69 -4.94 -85.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703117701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.393 kcal (2) G-P(sol) polarization free energy of solvation -80.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds