Wall clock time and date at job start Mon Mar 30 2020 04:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 H 1.09001 * 109.47462 * 306.36339 * 3 2 1 5 5 C 1.50699 * 109.46903 * 186.36048 * 3 2 1 6 6 H 1.08007 * 119.99858 * 245.73303 * 5 3 2 7 7 C 1.37874 * 120.00394 * 65.73783 * 5 3 2 8 8 N 1.31515 * 119.99769 * 7.16881 * 7 5 3 9 9 Si 1.86797 * 120.00401 * 187.17609 * 7 5 3 10 10 H 1.48497 * 109.47045 * 84.98854 * 9 7 5 11 11 H 1.48504 * 109.47227 * 204.98929 * 9 7 5 12 12 H 1.48497 * 109.46839 * 324.98962 * 9 7 5 13 13 N 1.46902 * 109.47169 * 66.36169 * 3 2 1 14 14 C 1.47480 * 110.99755 * 275.97215 * 13 3 2 15 15 C 1.53517 * 87.92812 * 221.29649 * 14 13 3 16 16 N 1.46495 * 114.17006 * 139.67513 * 15 14 13 17 17 S 1.65596 * 120.00575 * 121.15852 * 16 15 14 18 18 C 1.81403 * 104.45218 * 64.99439 * 17 16 15 19 19 O 1.42093 * 104.28386 * 181.06860 * 17 16 15 20 20 O 1.42109 * 104.27621 * 308.92549 * 17 16 15 21 21 C 1.47472 * 111.00029 * 179.97438 * 13 3 2 22 22 H 1.08996 * 109.47123 * 299.99325 * 1 2 3 23 23 H 1.08995 * 109.47709 * 59.99965 * 1 2 3 24 24 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47064 * 120.00302 * 2 1 3 26 26 H 1.09005 * 109.46886 * 240.00161 * 2 1 3 27 27 H 0.97003 * 120.00517 * 180.02562 * 8 7 5 28 28 H 1.08998 * 113.47578 * 336.05622 * 14 13 3 29 29 H 1.09000 * 113.47519 * 106.52909 * 14 13 3 30 30 H 1.09000 * 114.16535 * 272.37530 * 15 14 13 31 31 H 0.97004 * 119.99821 * 301.15701 * 16 15 14 32 32 H 1.09001 * 109.46817 * 60.00315 * 18 17 16 33 33 H 1.08995 * 109.47279 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46743 * 300.00437 * 18 17 16 35 35 H 1.09001 * 113.48334 * 253.46817 * 21 13 3 36 36 H 1.09001 * 113.47896 * 23.88395 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5866 1.9882 -0.8275 5 6 3.5387 1.4454 -0.1574 6 1 4.1656 1.7991 0.6479 7 6 4.1097 0.9966 -1.3293 8 7 3.3487 0.6993 -2.3599 9 14 5.9643 0.8106 -1.4534 10 1 6.3658 -0.5145 -0.9169 11 1 6.3782 0.9149 -2.8758 12 1 6.6231 1.8837 -0.6662 13 7 1.6796 2.0893 1.2688 14 6 0.3041 2.6191 1.2199 15 6 0.8180 3.8662 1.9530 16 7 0.2519 5.1256 1.4634 17 16 -0.5845 6.1142 2.4956 18 6 0.6533 6.6563 3.7058 19 8 -0.9961 7.2034 1.6812 20 8 -1.5376 5.2559 3.1075 21 6 2.1566 3.4842 1.3051 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.7503 0.3832 -3.1844 28 1 -0.0466 2.8238 0.2084 29 1 -0.4073 2.0347 1.8034 30 1 0.8079 3.7809 3.0396 31 1 0.3671 5.3804 0.5346 32 1 1.4544 7.1884 3.1926 33 1 0.1845 7.3189 4.4332 34 1 1.0648 5.7871 4.2188 35 1 3.0146 3.6330 1.9607 36 1 2.3013 3.9196 0.3163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703178242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:50 Heat of formation + Delta-G solvation = -36.476396 kcal Electronic energy + Delta-G solvation = -18585.151050 eV Core-core repulsion = 15618.818111 eV Total energy + Delta-G solvation = -2966.332939 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68064 -37.09642 -35.96769 -34.82379 -32.81894 -31.49438 -29.60785 -28.10446 -25.46714 -24.72712 -22.74532 -19.94208 -19.85123 -19.17928 -17.62059 -16.61099 -16.25792 -16.14373 -15.39976 -15.05144 -14.41604 -13.76486 -13.52520 -13.35394 -13.23654 -12.69342 -12.41295 -12.23331 -12.12300 -12.04650 -12.01113 -11.56677 -11.48206 -11.26331 -11.11705 -10.97849 -10.72268 -10.55181 -10.08729 -9.72407 -9.46376 -9.02412 -8.86127 -8.53636 -7.85788 -6.11046 -4.13930 0.22681 2.69225 3.26202 3.33029 3.34858 3.74380 4.14015 4.35280 4.59157 4.79983 4.87210 4.88929 5.05348 5.22323 5.47976 5.50980 5.89084 6.07834 6.17213 6.24183 6.30044 6.36780 6.48591 6.61566 6.66677 6.94055 7.02363 7.07301 7.32794 7.43943 7.74025 7.90998 8.15700 8.38455 8.92898 9.50896 10.97591 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.005232 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.272095 B = 5350.402079 C = 5896.314229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.102 4.102 3 C 0.186 3.814 4 H 0.017 0.983 5 C -0.513 4.513 6 H 0.061 0.939 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.465 5.465 14 C -0.009 4.009 15 C 0.106 3.894 16 N -1.102 6.102 17 S 2.613 3.387 18 C -0.674 4.674 19 O -0.967 6.967 20 O -0.957 6.957 21 C 0.015 3.985 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.262 0.738 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.419 0.581 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 9.132 9.136 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.141 4.141 3 C 0.079 3.921 4 H 0.034 0.966 5 C -0.551 4.551 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.189 5.189 14 C -0.140 4.140 15 C -0.001 4.001 16 N -0.861 5.861 17 S 2.704 3.296 18 C -0.824 4.824 19 O -0.957 6.957 20 O -0.947 6.947 21 C -0.116 4.116 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.254 0.746 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.095 0.905 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.238 8.729 9.578 13.978 hybrid contribution 1.628 0.366 -1.074 1.985 sum -3.609 9.095 8.504 12.964 Atomic orbital electron populations 1.22043 0.99185 0.99524 1.00559 1.21428 0.91880 0.99306 1.01443 1.19832 0.95972 0.91722 0.84582 0.96576 1.21059 0.90791 1.43094 1.00157 0.92104 1.24931 0.98108 0.95424 0.95447 1.69951 1.35097 1.44849 1.02777 0.86586 0.85572 0.78698 0.76975 1.20516 1.21392 1.20021 1.68916 1.02296 1.11157 1.36520 1.24338 0.95645 0.94098 0.99968 1.22737 0.96344 0.82237 0.98806 1.55527 1.74400 1.32438 1.23754 1.04722 0.75515 0.73860 0.75473 1.30553 1.19957 1.12944 1.18919 1.93601 1.80759 1.55354 1.66032 1.93626 1.57181 1.65289 1.78589 1.23908 0.95456 0.91790 1.00439 0.93074 0.94069 0.94860 0.93836 0.90588 0.92854 0.91382 0.90002 0.86566 0.74603 0.85227 0.85727 0.85297 0.90451 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.19 37.16 0.34 -2.70 16 2 C -0.10 -2.36 5.50 -26.73 -0.15 -2.50 16 3 C 0.19 4.40 1.22 -68.87 -0.08 4.32 16 4 H 0.02 0.43 7.47 -51.93 -0.39 0.04 16 5 C -0.51 -13.34 7.93 -34.44 -0.27 -13.62 16 6 H 0.06 1.59 7.58 -52.48 -0.40 1.19 16 7 C 0.06 1.68 5.19 -17.82 -0.09 1.59 16 8 N -0.89 -24.63 12.07 55.43 0.67 -23.96 16 9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 N -0.47 -9.18 6.11 -237.85 -1.45 -10.64 16 14 C -0.01 -0.16 5.37 -7.49 -0.04 -0.20 16 15 C 0.11 1.45 4.57 -67.70 -0.31 1.14 16 16 N -1.10 -12.72 5.71 -4.64 -0.03 -12.75 16 17 S 2.61 28.04 6.05 -107.50 -0.65 27.39 16 18 C -0.67 -4.70 10.89 101.05 1.10 -3.60 16 19 O -0.97 -13.40 18.08 -57.54 -1.04 -14.44 16 20 O -0.96 -13.73 17.82 -57.54 -1.03 -14.76 16 21 C 0.02 0.26 6.51 -7.48 -0.05 0.21 16 22 H 0.05 0.93 5.12 -51.93 -0.27 0.66 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 1.96 6.71 -51.93 -0.35 1.61 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.07 1.20 7.53 -51.93 -0.39 0.80 16 29 H 0.08 1.33 6.85 -51.93 -0.36 0.98 16 30 H 0.12 1.34 7.84 -51.93 -0.41 0.93 16 31 H 0.42 4.59 8.91 -34.46 -0.31 4.28 16 32 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.13 0.79 7.92 -51.92 -0.41 0.38 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -32.65 304.05 -8.87 -41.52 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.35 Total: 2.77 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 0.45 Total: -15.36 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.81 Total: -47.34 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -2.07 Total: -29.20 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 28.04 SS G_CDS: -0.65 Total: 27.39 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.65 -8.87 -41.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703178242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.042 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds