Wall clock time and date at job start Mon Mar 30 2020 04:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46965 * 2 1 4 4 H 1.09001 * 109.47462 * 306.36339 * 3 2 1 5 5 C 1.50699 * 109.46903 * 186.36048 * 3 2 1 6 6 H 1.08007 * 119.99858 * 245.73303 * 5 3 2 7 7 C 1.37874 * 120.00394 * 65.73783 * 5 3 2 8 8 N 1.31515 * 119.99769 * 7.16881 * 7 5 3 9 9 Si 1.86797 * 120.00401 * 187.17609 * 7 5 3 10 10 H 1.48497 * 109.47045 * 84.98854 * 9 7 5 11 11 H 1.48504 * 109.47227 * 204.98929 * 9 7 5 12 12 H 1.48497 * 109.46839 * 324.98962 * 9 7 5 13 13 N 1.46902 * 109.47169 * 66.36169 * 3 2 1 14 14 C 1.47480 * 110.99755 * 275.97215 * 13 3 2 15 15 C 1.53517 * 87.92812 * 221.29649 * 14 13 3 16 16 N 1.46495 * 114.17006 * 139.67513 * 15 14 13 17 17 S 1.65596 * 120.00575 * 121.15852 * 16 15 14 18 18 C 1.81403 * 104.45218 * 64.99439 * 17 16 15 19 19 O 1.42093 * 104.28386 * 181.06860 * 17 16 15 20 20 O 1.42109 * 104.27621 * 308.92549 * 17 16 15 21 21 C 1.47472 * 111.00029 * 179.97438 * 13 3 2 22 22 H 1.08996 * 109.47123 * 299.99325 * 1 2 3 23 23 H 1.08995 * 109.47709 * 59.99965 * 1 2 3 24 24 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47064 * 120.00302 * 2 1 3 26 26 H 1.09005 * 109.46886 * 240.00161 * 2 1 3 27 27 H 0.97003 * 120.00517 * 180.02562 * 8 7 5 28 28 H 1.08998 * 113.47578 * 336.05622 * 14 13 3 29 29 H 1.09000 * 113.47519 * 106.52909 * 14 13 3 30 30 H 1.09000 * 114.16535 * 272.37530 * 15 14 13 31 31 H 0.97004 * 119.99821 * 301.15701 * 16 15 14 32 32 H 1.09001 * 109.46817 * 60.00315 * 18 17 16 33 33 H 1.08995 * 109.47279 * 180.02562 * 18 17 16 34 34 H 1.09001 * 109.46743 * 300.00437 * 18 17 16 35 35 H 1.09001 * 113.48334 * 253.46817 * 21 13 3 36 36 H 1.09001 * 113.47896 * 23.88395 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5866 1.9882 -0.8275 5 6 3.5387 1.4454 -0.1574 6 1 4.1656 1.7991 0.6479 7 6 4.1097 0.9966 -1.3293 8 7 3.3487 0.6993 -2.3599 9 14 5.9643 0.8106 -1.4534 10 1 6.3658 -0.5145 -0.9169 11 1 6.3782 0.9149 -2.8758 12 1 6.6231 1.8837 -0.6662 13 7 1.6796 2.0893 1.2688 14 6 0.3041 2.6191 1.2199 15 6 0.8180 3.8662 1.9530 16 7 0.2519 5.1256 1.4634 17 16 -0.5845 6.1142 2.4956 18 6 0.6533 6.6563 3.7058 19 8 -0.9961 7.2034 1.6812 20 8 -1.5376 5.2559 3.1075 21 6 2.1566 3.4842 1.3051 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 3.7503 0.3832 -3.1844 28 1 -0.0466 2.8238 0.2084 29 1 -0.4073 2.0347 1.8034 30 1 0.8079 3.7809 3.0396 31 1 0.3671 5.3804 0.5346 32 1 1.4544 7.1884 3.1926 33 1 0.1845 7.3189 4.4332 34 1 1.0648 5.7871 4.2188 35 1 3.0146 3.6330 1.9607 36 1 2.3013 3.9196 0.3163 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703178242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:49 Heat of formation + Delta-G solvation = -64.512914 kcal Electronic energy + Delta-G solvation = -18586.366805 eV Core-core repulsion = 15618.818111 eV Total energy + Delta-G solvation = -2967.548694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09562 -38.07960 -36.94828 -36.39485 -34.32886 -33.22713 -30.20996 -29.80086 -26.97170 -26.28914 -24.44395 -21.54367 -21.09024 -20.30274 -18.64480 -18.37645 -17.53947 -17.12578 -16.81085 -16.35313 -16.00641 -15.32009 -14.82017 -14.34892 -14.06310 -13.96974 -13.82005 -13.64176 -13.40800 -13.26873 -13.13447 -13.04442 -12.93920 -12.83997 -12.63034 -12.52554 -12.21750 -11.99976 -11.72614 -11.53301 -11.03689 -10.74964 -10.52179 -10.17202 -9.50218 -8.14182 -6.22879 -0.59727 1.41719 1.44025 1.51951 1.79119 2.42394 2.93197 3.17208 3.33313 3.48633 3.60827 3.94059 4.08345 4.17993 4.36373 4.50064 4.59490 4.61959 4.69464 4.80166 4.87500 4.97928 5.02414 5.11571 5.21664 5.31396 5.41093 5.52144 5.60179 5.74171 6.02852 6.08155 6.29429 6.54442 6.92442 7.45717 8.94021 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028792 B = 0.005232 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.272095 B = 5350.402079 C = 5896.314229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C 0.193 3.807 4 H -0.018 1.018 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.476 5.476 14 C -0.019 4.019 15 C 0.135 3.865 16 N -1.104 6.104 17 S 2.621 3.379 18 C -0.650 4.650 19 O -1.002 7.002 20 O -0.997 6.997 21 C 0.010 3.990 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.420 0.580 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 10.186 11.321 15.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C 0.085 3.915 4 H -0.001 1.001 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.199 5.199 14 C -0.150 4.150 15 C 0.027 3.973 16 N -0.860 5.860 17 S 2.718 3.282 18 C -0.804 4.804 19 O -0.993 6.993 20 O -0.987 6.987 21 C -0.121 4.121 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.109 0.891 30 H 0.167 0.833 31 H 0.255 0.745 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.109 0.891 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.602 9.781 11.744 15.961 hybrid contribution 1.419 0.101 -1.691 2.210 sum -3.184 9.882 10.053 14.452 Atomic orbital electron populations 1.21915 0.96456 1.00845 1.00944 1.21298 0.94352 0.98616 0.99491 1.19587 0.94595 0.91941 0.85394 1.00061 1.21373 0.92230 1.42478 0.99932 0.92335 1.25679 1.02178 0.95342 0.95260 1.70078 1.36735 1.45906 1.03186 0.85630 0.80743 0.78743 0.76874 1.20321 1.21378 1.19018 1.68817 1.04410 1.12989 1.33724 1.24410 0.94397 0.96175 1.00037 1.22511 0.93166 0.81707 0.99910 1.55448 1.74030 1.32119 1.24423 1.04322 0.75803 0.72692 0.75425 1.30325 1.18288 1.14346 1.17444 1.93557 1.82026 1.55940 1.67787 1.93576 1.59847 1.66330 1.78941 1.23946 0.97769 0.90158 1.00230 0.91445 0.94870 0.93051 0.94203 0.93930 0.93054 0.92751 0.89139 0.83326 0.74524 0.83341 0.83365 0.83358 0.89133 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 9.19 71.98 0.66 -4.95 16 2 C -0.10 -4.66 5.50 30.59 0.17 -4.49 16 3 C 0.19 9.32 1.22 44.17 0.05 9.38 16 4 H -0.02 -0.99 7.47 -2.39 -0.02 -1.01 16 5 C -0.52 -27.52 7.93 25.60 0.20 -27.32 16 6 H 0.06 3.04 7.58 -2.91 -0.02 3.02 16 7 C 0.01 0.79 5.19 84.65 0.44 1.23 16 8 N -0.92 -52.45 12.07 21.45 0.26 -52.19 16 9 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 13 N -0.48 -18.57 6.11 -906.41 -5.54 -24.11 16 14 C -0.02 -0.63 5.37 83.61 0.45 -0.18 16 15 C 0.14 3.41 4.57 45.46 0.21 3.61 16 16 N -1.10 -23.75 5.71 -168.61 -0.96 -24.71 16 17 S 2.62 50.91 6.05 -56.49 -0.34 50.57 16 18 C -0.65 -6.05 10.89 113.37 1.23 -4.81 16 19 O -1.00 -26.76 18.08 -127.65 -2.31 -29.06 16 20 O -1.00 -26.98 17.82 -127.65 -2.27 -29.25 16 21 C 0.01 0.33 6.51 83.62 0.54 0.87 16 22 H 0.07 2.38 5.12 -2.39 -0.01 2.37 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 2.26 6.71 -2.38 -0.02 2.25 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.05 1.94 7.53 -2.39 -0.02 1.92 16 29 H 0.09 2.80 6.85 -2.39 -0.02 2.79 16 30 H 0.15 2.82 7.84 -2.39 -0.02 2.80 16 31 H 0.42 8.99 8.91 -96.75 -0.86 8.13 16 32 H 0.15 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.15 0.98 7.92 -2.39 -0.02 0.96 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.06 2.03 7.89 -2.39 -0.02 2.02 16 Total: -1.00 -71.99 304.05 -4.97 -76.96 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.21 Total: 13.81 kcal Atomic # 6 Polarization: -30.63 SS G_CDS: 3.96 Total: -26.67 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -6.24 Total: -101.01 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -4.58 Total: -58.32 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 50.91 SS G_CDS: -0.34 Total: 50.57 kcal Total: -71.99 -4.97 -76.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703178242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.443 kcal (2) G-P(sol) polarization free energy of solvation -71.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds