Wall clock time and date at job start Mon Mar 30 2020 04:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.08997 * 109.47188 * 54.99802 * 3 2 1 5 5 C 1.50698 * 109.47068 * 174.99960 * 3 2 1 6 6 H 1.08002 * 120.00166 * 114.52346 * 5 3 2 7 7 C 1.37877 * 120.00251 * 294.52400 * 5 3 2 8 8 N 1.31512 * 120.00350 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99762 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47338 * 89.99782 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00119 * 9 7 5 12 12 H 1.48500 * 109.47148 * 330.00127 * 9 7 5 13 13 N 1.46901 * 109.46938 * 294.99901 * 3 2 1 14 14 C 1.47487 * 110.99827 * 173.29157 * 13 3 2 15 15 C 1.53510 * 87.93105 * 221.29828 * 14 13 3 16 16 N 1.46501 * 114.16930 * 139.67063 * 15 14 13 17 17 S 1.65604 * 119.99628 * 121.15814 * 16 15 14 18 18 C 1.81393 * 104.45090 * 64.99998 * 17 16 15 19 19 O 1.42104 * 104.27511 * 181.07245 * 17 16 15 20 20 O 1.42094 * 104.27882 * 308.92769 * 17 16 15 21 21 C 1.47480 * 111.00008 * 77.32074 * 13 3 2 22 22 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46808 * 300.00303 * 1 2 3 24 24 H 1.09006 * 109.46594 * 59.99852 * 1 2 3 25 25 H 1.09000 * 109.46808 * 239.99696 * 2 1 3 26 26 H 1.09004 * 109.47030 * 120.00439 * 2 1 3 27 27 H 0.97002 * 120.00124 * 179.97438 * 8 7 5 28 28 H 1.09006 * 113.47194 * 336.06486 * 14 13 3 29 29 H 1.09001 * 113.47699 * 106.52842 * 14 13 3 30 30 H 1.08998 * 114.34321 * 272.36188 * 15 14 13 31 31 H 0.96993 * 120.00010 * 301.15437 * 16 15 14 32 32 H 1.09007 * 109.47170 * 59.99688 * 18 17 16 33 33 H 1.09006 * 109.47394 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47651 * 300.00058 * 18 17 16 35 35 H 1.09001 * 113.47656 * 253.46707 * 21 13 3 36 36 H 1.09006 * 113.47374 * 23.87478 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1506 1.8081 -0.6908 7 6 4.1392 0.9811 1.2771 8 7 5.4499 0.9822 1.3850 9 14 3.0866 0.3510 2.6857 10 1 2.8543 -1.1060 2.5169 11 1 3.7851 0.5949 3.9733 12 1 1.7834 1.0630 2.6869 13 7 1.6515 2.0992 -1.2553 14 6 1.9856 3.5354 -1.2258 15 6 0.6342 3.8068 -1.9014 16 7 -0.0693 4.9833 -1.3845 17 16 -0.4636 6.2267 -2.4048 18 6 -1.6583 5.5017 -3.5613 19 8 -1.0986 7.1811 -1.5650 20 8 0.7534 6.5324 -3.0715 21 6 0.2287 2.4869 -1.2305 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.8700 0.6567 2.1965 28 1 2.0570 3.9440 -0.2177 29 1 2.8421 3.7948 -1.8481 30 1 0.6597 3.7645 -2.9903 31 1 -0.3041 5.0339 -0.4448 32 1 -2.5247 5.1385 -3.0085 33 1 -1.9762 6.2593 -4.2777 34 1 -1.1922 4.6718 -4.0925 35 1 -0.4037 1.8577 -1.8568 36 1 -0.1690 2.6147 -0.2237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703178244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:53 Heat of formation + Delta-G solvation = -25.069283 kcal Electronic energy + Delta-G solvation = -18670.320380 eV Core-core repulsion = 15704.482090 eV Total energy + Delta-G solvation = -2965.838289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92071 -37.14298 -36.00663 -35.06738 -32.84454 -31.90603 -29.67296 -28.60827 -25.60425 -24.95831 -22.66741 -20.22913 -19.96043 -19.26781 -17.68523 -16.97202 -16.44681 -16.27189 -15.48361 -15.13843 -14.60486 -13.89732 -13.60531 -13.44830 -13.33843 -12.94775 -12.60930 -12.38135 -12.23955 -12.16642 -12.04346 -12.00531 -11.81692 -11.52495 -11.31167 -11.04188 -10.87000 -10.45643 -10.00805 -9.91377 -9.47662 -9.17076 -9.08666 -8.60795 -8.09122 -6.12363 -4.12102 0.16766 2.62808 3.21316 3.30331 3.32478 3.69739 4.08379 4.33743 4.49351 4.62828 4.77675 4.80401 4.94159 5.16588 5.30628 5.42227 5.66313 5.79229 5.84475 5.90787 5.95112 6.04057 6.30668 6.45663 6.49317 6.54098 6.66437 6.75969 6.92395 7.00855 7.31972 7.70600 7.80706 8.53358 8.95846 9.48801 11.00484 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.005393 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.149519 B = 5190.923040 C = 5532.179592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.119 4.119 3 C 0.156 3.844 4 H 0.009 0.991 5 C -0.509 4.509 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.878 3.122 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.267 1.267 13 N -0.451 5.451 14 C 0.013 3.987 15 C 0.108 3.892 16 N -1.103 6.103 17 S 2.612 3.388 18 C -0.675 4.675 19 O -0.966 6.966 20 O -0.953 6.953 21 C -0.014 4.014 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.865 5.516 -7.232 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.027 0.973 5 C -0.547 4.547 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.192 1.192 13 N -0.175 5.175 14 C -0.118 4.118 15 C 0.000 4.000 16 N -0.862 5.862 17 S 2.704 3.296 18 C -0.824 4.824 19 O -0.957 6.957 20 O -0.943 6.943 21 C -0.145 4.145 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.253 0.747 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.042 5.882 -7.784 17.930 hybrid contribution -1.207 -0.683 1.812 2.282 sum -16.249 5.199 -5.972 18.076 Atomic orbital electron populations 1.22227 0.98388 1.00437 1.01364 1.21838 0.92948 0.99445 1.01512 1.20299 0.97407 0.91139 0.86417 0.97336 1.20896 0.88538 1.42647 1.02590 0.90054 1.24921 0.94750 0.95277 0.98029 1.69880 1.08715 1.46907 1.27879 0.86950 0.80783 0.79543 0.81928 1.20289 1.22093 1.19170 1.68867 1.02878 1.10123 1.35600 1.23968 0.96577 0.90477 1.00742 1.22715 0.94525 0.83955 0.98779 1.55545 1.72453 1.35705 1.22468 1.04774 0.75781 0.73710 0.75377 1.30561 1.19021 1.14495 1.18323 1.93605 1.78509 1.58570 1.64980 1.93642 1.41503 1.82409 1.76698 1.24450 0.95633 0.94260 1.00197 0.94110 0.94032 0.91671 0.91431 0.93096 0.92550 0.90786 0.89531 0.86274 0.74735 0.85348 0.85641 0.85291 0.89722 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 8.84 37.16 0.33 -2.41 16 2 C -0.12 -2.48 5.18 -26.73 -0.14 -2.62 16 3 C 0.16 3.48 0.92 -68.87 -0.06 3.41 16 4 H 0.01 0.21 6.23 -51.93 -0.32 -0.12 16 5 C -0.51 -13.84 8.68 -34.44 -0.30 -14.14 16 6 H 0.08 2.45 8.02 -52.49 -0.42 2.03 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.20 16 9 Si 0.88 21.28 24.68 -169.99 -4.20 17.08 16 10 H -0.28 -6.55 6.86 56.52 0.39 -6.16 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.15 6.39 56.52 0.36 -5.79 16 13 N -0.45 -8.52 6.12 -237.98 -1.46 -9.98 16 14 C 0.01 0.23 6.87 -7.54 -0.05 0.18 16 15 C 0.11 1.38 4.57 -67.72 -0.31 1.07 16 16 N -1.10 -11.82 5.71 -4.66 -0.03 -11.85 16 17 S 2.61 26.81 6.05 -107.50 -0.65 26.16 16 18 C -0.67 -4.15 10.89 101.05 1.10 -3.05 16 19 O -0.97 -12.92 18.08 -57.54 -1.04 -13.96 16 20 O -0.95 -13.69 17.82 -57.54 -1.03 -14.71 16 21 C -0.01 -0.20 5.12 -7.54 -0.04 -0.24 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.95 4.60 -51.93 -0.24 0.71 16 25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.05 1.13 4.00 -51.93 -0.21 0.93 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.07 1.37 7.82 -51.93 -0.41 0.97 16 29 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.12 1.27 7.82 -51.93 -0.41 0.87 16 31 H 0.42 4.11 8.91 -34.47 -0.31 3.80 16 32 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 33 H 0.12 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.13 0.68 7.91 -51.92 -0.41 0.26 16 35 H 0.08 1.02 6.73 -51.93 -0.35 0.67 16 36 H 0.07 0.96 7.28 -51.93 -0.38 0.58 16 LS Contribution 295.77 15.07 4.46 4.46 Total: -1.00 -34.85 295.77 -7.91 -42.76 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.17 Total: 2.10 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 0.43 Total: -15.85 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.71 Total: -48.03 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -2.07 Total: -28.67 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.20 Total: 17.08 kcal Atomic # 16 Polarization: 26.81 SS G_CDS: -0.65 Total: 26.16 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.85 -7.91 -42.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703178244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.687 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds