Wall clock time and date at job start Mon Mar 30 2020 04:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47322 * 2 1 4 4 H 1.08997 * 109.47188 * 54.99802 * 3 2 1 5 5 C 1.50698 * 109.47068 * 174.99960 * 3 2 1 6 6 H 1.08002 * 120.00166 * 114.52346 * 5 3 2 7 7 C 1.37877 * 120.00251 * 294.52400 * 5 3 2 8 8 N 1.31512 * 120.00350 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99762 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47338 * 89.99782 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00119 * 9 7 5 12 12 H 1.48500 * 109.47148 * 330.00127 * 9 7 5 13 13 N 1.46901 * 109.46938 * 294.99901 * 3 2 1 14 14 C 1.47487 * 110.99827 * 173.29157 * 13 3 2 15 15 C 1.53510 * 87.93105 * 221.29828 * 14 13 3 16 16 N 1.46501 * 114.16930 * 139.67063 * 15 14 13 17 17 S 1.65604 * 119.99628 * 121.15814 * 16 15 14 18 18 C 1.81393 * 104.45090 * 64.99998 * 17 16 15 19 19 O 1.42104 * 104.27511 * 181.07245 * 17 16 15 20 20 O 1.42094 * 104.27882 * 308.92769 * 17 16 15 21 21 C 1.47480 * 111.00008 * 77.32074 * 13 3 2 22 22 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46808 * 300.00303 * 1 2 3 24 24 H 1.09006 * 109.46594 * 59.99852 * 1 2 3 25 25 H 1.09000 * 109.46808 * 239.99696 * 2 1 3 26 26 H 1.09004 * 109.47030 * 120.00439 * 2 1 3 27 27 H 0.97002 * 120.00124 * 179.97438 * 8 7 5 28 28 H 1.09006 * 113.47194 * 336.06486 * 14 13 3 29 29 H 1.09001 * 113.47699 * 106.52842 * 14 13 3 30 30 H 1.08998 * 114.34321 * 272.36188 * 15 14 13 31 31 H 0.96993 * 120.00010 * 301.15437 * 16 15 14 32 32 H 1.09007 * 109.47170 * 59.99688 * 18 17 16 33 33 H 1.09006 * 109.47394 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47651 * 300.00058 * 18 17 16 35 35 H 1.09001 * 113.47656 * 253.46707 * 21 13 3 36 36 H 1.09006 * 113.47374 * 23.87478 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1506 1.8081 -0.6908 7 6 4.1392 0.9811 1.2771 8 7 5.4499 0.9822 1.3850 9 14 3.0866 0.3510 2.6857 10 1 2.8543 -1.1060 2.5169 11 1 3.7851 0.5949 3.9733 12 1 1.7834 1.0630 2.6869 13 7 1.6515 2.0992 -1.2553 14 6 1.9856 3.5354 -1.2258 15 6 0.6342 3.8068 -1.9014 16 7 -0.0693 4.9833 -1.3845 17 16 -0.4636 6.2267 -2.4048 18 6 -1.6583 5.5017 -3.5613 19 8 -1.0986 7.1811 -1.5650 20 8 0.7534 6.5324 -3.0715 21 6 0.2287 2.4869 -1.2305 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 5.8700 0.6567 2.1965 28 1 2.0570 3.9440 -0.2177 29 1 2.8421 3.7948 -1.8481 30 1 0.6597 3.7645 -2.9903 31 1 -0.3041 5.0339 -0.4448 32 1 -2.5247 5.1385 -3.0085 33 1 -1.9762 6.2593 -4.2777 34 1 -1.1922 4.6718 -4.0925 35 1 -0.4037 1.8577 -1.8568 36 1 -0.1690 2.6147 -0.2237 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703178244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:52 Heat of formation + Delta-G solvation = -57.459848 kcal Electronic energy + Delta-G solvation = -18671.724940 eV Core-core repulsion = 15704.482090 eV Total energy + Delta-G solvation = -2967.242850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25565 -38.08951 -36.95423 -36.52292 -34.41646 -33.54399 -30.20678 -30.19911 -27.06997 -26.38280 -24.27590 -21.70791 -21.13555 -20.31453 -18.97876 -18.57655 -17.66153 -17.16909 -16.78985 -16.45190 -16.07148 -15.25349 -15.01785 -14.75283 -14.06387 -14.00268 -13.89963 -13.78484 -13.60675 -13.37637 -13.13876 -13.09911 -13.00255 -12.98109 -12.61822 -12.54595 -12.05047 -11.94496 -11.78216 -11.48414 -11.09270 -11.00635 -10.65558 -10.19664 -9.59359 -8.30833 -6.34511 -0.60474 1.28367 1.31542 1.41600 1.78656 2.29249 2.93829 3.03126 3.28927 3.39132 3.58223 3.90846 4.03532 4.15874 4.32122 4.37662 4.39826 4.52546 4.59672 4.69073 4.77716 4.85956 4.95398 5.02406 5.07915 5.19627 5.32085 5.35666 5.41514 5.73611 5.77920 6.02678 6.11690 6.58608 6.73003 7.30671 8.86191 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.005393 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.149519 B = 5190.923040 C = 5532.179592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C 0.161 3.839 4 H 0.005 0.995 5 C -0.509 4.509 6 H 0.032 0.968 7 C 0.011 3.989 8 N -0.950 5.950 9 Si 0.944 3.056 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.244 1.244 13 N -0.471 5.471 14 C -0.007 4.007 15 C 0.136 3.864 16 N -1.102 6.102 17 S 2.615 3.385 18 C -0.645 4.645 19 O -1.002 7.002 20 O -1.004 7.004 21 C -0.009 4.009 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.265 0.735 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.148 0.852 31 H 0.422 0.578 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.231 4.771 -7.997 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.159 4.159 3 C 0.052 3.948 4 H 0.023 0.977 5 C -0.548 4.548 6 H 0.050 0.950 7 C -0.186 4.186 8 N -0.590 5.590 9 Si 0.770 3.230 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.167 1.167 13 N -0.194 5.194 14 C -0.139 4.139 15 C 0.028 3.972 16 N -0.859 5.859 17 S 2.712 3.288 18 C -0.799 4.799 19 O -0.993 6.993 20 O -0.994 6.994 21 C -0.139 4.139 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.165 0.835 31 H 0.257 0.743 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.138 0.862 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.408 5.166 -8.530 21.820 hybrid contribution 0.180 -0.381 1.900 1.946 sum -19.227 4.785 -6.630 20.894 Atomic orbital electron populations 1.22158 0.94253 1.02336 1.02814 1.21740 0.96622 0.97299 1.00191 1.20115 0.93748 0.92914 0.88055 0.97734 1.21208 0.91510 1.41112 1.00933 0.94995 1.25816 0.95875 0.95794 1.01134 1.70053 1.10961 1.49114 1.28912 0.85884 0.79725 0.79639 0.77757 1.19014 1.22526 1.16720 1.68765 1.06686 1.10473 1.33463 1.24073 0.99154 0.90544 1.00104 1.22490 0.90645 0.84303 0.99812 1.55406 1.72473 1.34805 1.23196 1.04470 0.75651 0.73310 0.75348 1.30292 1.17458 1.15293 1.16900 1.93558 1.78793 1.60202 1.66715 1.93584 1.45086 1.83457 1.77269 1.24543 0.92935 0.94990 1.01481 0.92077 0.93330 0.89470 0.92513 0.94804 0.92614 0.92697 0.92020 0.83502 0.74307 0.82745 0.83531 0.83216 0.86190 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 8.84 71.98 0.64 -3.85 16 2 C -0.12 -4.77 5.18 30.59 0.16 -4.61 16 3 C 0.16 7.12 0.92 44.17 0.04 7.16 16 4 H 0.01 0.23 6.23 -2.39 -0.01 0.22 16 5 C -0.51 -28.97 8.68 25.60 0.22 -28.75 16 6 H 0.03 2.07 8.02 -2.91 -0.02 2.04 16 7 C 0.01 0.64 5.45 84.66 0.46 1.10 16 8 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 9 Si 0.94 44.33 24.68 68.60 1.69 46.02 16 10 H -0.26 -11.83 6.86 99.48 0.68 -11.15 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.24 -10.40 6.39 99.48 0.64 -9.77 16 13 N -0.47 -17.39 6.12 -906.83 -5.55 -22.94 16 14 C -0.01 -0.26 6.87 83.58 0.57 0.31 16 15 C 0.14 3.15 4.57 45.45 0.21 3.36 16 16 N -1.10 -21.24 5.71 -168.65 -0.96 -22.21 16 17 S 2.62 48.45 6.05 -56.49 -0.34 48.11 16 18 C -0.64 -4.52 10.89 113.37 1.23 -3.29 16 19 O -1.00 -25.60 18.08 -127.65 -2.31 -27.91 16 20 O -1.00 -28.32 17.82 -127.65 -2.27 -30.59 16 21 C -0.01 -0.22 5.12 83.58 0.43 0.20 16 22 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 2.06 4.60 -2.38 -0.01 2.05 16 25 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.03 1.44 4.00 -2.38 -0.01 1.43 16 27 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 28 H 0.05 2.14 7.82 -2.38 -0.02 2.12 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.15 2.61 7.82 -2.39 -0.02 2.59 16 31 H 0.42 7.53 8.91 -96.75 -0.86 6.66 16 32 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.15 0.62 7.91 -2.39 -0.02 0.60 16 35 H 0.12 2.16 6.73 -2.39 -0.02 2.15 16 36 H 0.08 1.80 7.28 -2.38 -0.02 1.79 16 Total: -1.00 -81.42 295.77 -5.35 -86.77 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.13 Total: 10.85 kcal Atomic # 6 Polarization: -32.33 SS G_CDS: 3.96 Total: -28.37 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -6.21 Total: -104.89 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -4.58 Total: -58.50 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.69 Total: 46.02 kcal Atomic # 16 Polarization: 48.45 SS G_CDS: -0.34 Total: 48.11 kcal Total: -81.42 -5.35 -86.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703178244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.312 kcal (2) G-P(sol) polarization free energy of solvation -81.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds