Wall clock time and date at job start Mon Mar 30 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 119.99854 * 2 1 4 4 C 1.50705 * 109.47224 * 270.00407 * 3 2 1 5 5 H 1.08000 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99914 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00055 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46870 * 60.00112 * 8 6 4 10 10 H 1.48495 * 109.47141 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46925 * 300.00453 * 8 6 4 12 12 C 1.39145 * 119.99909 * 180.02562 * 2 1 3 13 13 C 1.39528 * 120.37122 * 359.97438 * 12 2 1 14 14 C 1.38111 * 118.46184 * 179.97438 * 13 12 2 15 15 C 1.39868 * 119.13433 * 359.97438 * 14 13 12 16 16 C 1.47080 * 119.66743 * 179.97438 * 15 14 13 17 17 C 1.34987 * 119.99906 * 179.72514 * 16 15 14 18 18 C 1.46231 * 119.99610 * 180.27858 * 17 16 15 19 19 O 1.21623 * 120.00319 * 0.02562 * 18 17 16 20 20 O 1.34916 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.33040 * 120.66522 * 0.26052 * 15 14 13 22 22 C 1.31367 * 121.67394 * 359.46244 * 21 15 14 23 23 H 1.09000 * 109.46841 * 269.99517 * 1 2 3 24 24 H 1.09001 * 109.47511 * 29.99481 * 1 2 3 25 25 H 1.08994 * 109.47229 * 150.00154 * 1 2 3 26 26 H 1.09004 * 109.47472 * 30.00669 * 3 2 1 27 27 H 1.09003 * 109.46885 * 150.00218 * 3 2 1 28 28 H 0.97003 * 119.99929 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.76747 * 359.95762 * 13 12 2 30 30 H 1.07999 * 120.42917 * 179.97438 * 14 13 12 31 31 H 1.08002 * 120.00219 * 0.02562 * 16 15 14 32 32 H 1.07992 * 119.99811 * 0.27881 * 17 16 15 33 33 H 0.96700 * 113.99879 * 179.97438 * 20 18 17 34 34 H 1.07995 * 119.60157 * 180.27142 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5550 3.6171 -0.6731 8 14 3.4387 3.4166 -3.4339 9 1 2.1412 3.5945 -4.1342 10 1 4.1821 4.7020 -3.4338 11 1 4.2410 2.3813 -4.1337 12 6 2.1608 -1.2050 -0.0005 13 6 1.4710 -2.4179 -0.0005 14 6 2.2010 -3.5903 -0.0016 15 6 3.5980 -3.5226 -0.0032 16 6 4.3870 -4.7639 -0.0038 17 6 5.7356 -4.7063 -0.0110 18 6 6.5200 -5.9405 -0.0177 19 8 5.9573 -7.0187 -0.0174 20 8 7.8679 -5.8830 -0.0254 21 7 4.2204 -2.3467 0.0015 22 6 3.5549 -1.2141 -0.0027 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1383 0.5138 28 1 4.0325 4.4427 -0.8503 29 1 0.3912 -2.4393 0.0006 30 1 1.6996 -4.5468 -0.0013 31 1 3.8874 -5.7214 -0.0035 32 1 6.2352 -3.7489 -0.0117 33 1 8.2984 -6.7489 -0.0291 34 1 4.0943 -0.2785 -0.0031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703450404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:14 Heat of formation + Delta-G solvation = -36.279179 kcal Electronic energy + Delta-G solvation = -18419.080358 eV Core-core repulsion = 15317.312020 eV Total energy + Delta-G solvation = -3101.768338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.10807 -39.74151 -36.67212 -36.04612 -33.46744 -32.83968 -31.77620 -29.37398 -28.22827 -26.01926 -24.20557 -23.27737 -22.33463 -20.64502 -19.35802 -18.19985 -17.06899 -16.77631 -16.50132 -15.77357 -15.47730 -15.21620 -14.59556 -14.20765 -13.83652 -13.65447 -13.38226 -13.18929 -12.85044 -12.35529 -12.14238 -11.70177 -11.61788 -11.59601 -11.32388 -10.99362 -10.72412 -10.60643 -10.56942 -10.20612 -9.80769 -9.50552 -9.06580 -8.78621 -8.62830 -6.73396 -6.19593 -4.33273 0.70177 1.74203 2.13927 3.16599 3.21358 3.26809 3.27364 3.29514 3.75956 4.28771 4.41129 4.71308 5.03459 5.08874 5.23387 5.31134 5.43146 5.45797 5.56879 5.74357 5.80651 6.03192 6.09799 6.21436 6.36297 6.43942 6.54748 6.66728 6.71494 7.05314 7.10439 7.62162 7.84786 7.90968 7.95817 8.01757 8.49966 8.73519 9.34895 10.81805 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.004401 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.951646 B = 6361.136753 C = 7319.977133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.591 5.591 3 C 0.243 3.757 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.212 3.788 13 C -0.197 4.197 14 C -0.082 4.082 15 C 0.014 3.986 16 C 0.030 3.970 17 C -0.209 4.209 18 C 0.513 3.487 19 O -0.535 6.535 20 O -0.505 6.505 21 N -0.422 5.422 22 C 0.041 3.959 23 H 0.044 0.956 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.267 0.733 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.150 0.850 33 H 0.404 0.596 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -12.534 2.300 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.292 5.292 3 C 0.123 3.877 4 C -0.581 4.581 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.098 3.902 13 C -0.227 4.227 14 C -0.102 4.102 15 C -0.120 4.120 16 C 0.010 3.990 17 C -0.230 4.230 18 C 0.360 3.640 19 O -0.427 6.427 20 O -0.314 6.314 21 N -0.130 5.130 22 C -0.128 4.128 23 H 0.063 0.937 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.167 0.833 33 H 0.260 0.740 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.746 -11.984 2.361 12.237 hybrid contribution -0.520 -0.067 -1.031 1.157 sum -1.266 -12.052 1.329 12.191 Atomic orbital electron populations 1.21644 0.80671 1.02634 1.00450 1.47228 1.05127 1.04701 1.72131 1.19489 0.92258 0.78298 0.97625 1.21447 1.37523 1.06949 0.92143 0.92142 1.24943 0.95023 0.96095 0.97653 1.69906 1.37581 1.14381 1.30986 0.86535 0.78513 0.78029 0.84312 1.20180 1.21026 1.19948 1.19245 0.93250 0.86978 0.90747 1.20945 1.00011 0.90927 1.10779 1.21772 0.93671 0.98324 0.96466 1.19314 0.90403 0.91302 1.10948 1.22161 0.93035 0.95881 0.87896 1.22084 0.93892 0.96138 1.10876 1.21200 0.80874 0.90085 0.71809 1.90895 1.72174 1.31770 1.47851 1.85104 1.20943 1.39305 1.86091 1.67473 1.40300 0.97570 1.07686 1.22654 0.89738 0.96500 1.03909 0.93708 0.90651 0.92282 0.94422 0.94178 0.92307 0.85158 0.85356 0.84746 0.83280 0.74019 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.35 10.20 59.85 0.61 1.97 16 2 N -0.59 -11.27 2.98 -180.81 -0.54 -11.81 16 3 C 0.24 5.55 4.91 -5.19 -0.03 5.53 16 4 C -0.54 -13.83 9.39 -34.44 -0.32 -14.15 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.21 3.89 6.57 -83.62 -0.55 3.34 16 13 C -0.20 -3.01 9.28 -39.15 -0.36 -3.37 16 14 C -0.08 -1.16 9.82 -39.02 -0.38 -1.54 16 15 C 0.01 0.23 6.70 -83.15 -0.56 -0.33 16 16 C 0.03 0.42 9.44 -37.15 -0.35 0.07 16 17 C -0.21 -2.98 9.67 -37.53 -0.36 -3.34 16 18 C 0.51 6.94 8.23 33.94 0.28 7.22 16 19 O -0.53 -8.28 16.97 -19.36 -0.33 -8.60 16 20 O -0.51 -5.54 13.56 -41.08 -0.56 -6.10 16 21 N -0.42 -7.81 9.31 -9.73 -0.09 -7.90 16 22 C 0.04 0.80 10.37 -17.31 -0.18 0.62 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 25 H 0.06 0.76 6.22 -51.93 -0.32 0.44 16 26 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 27 H 0.04 0.97 6.21 -51.93 -0.32 0.65 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.13 1.66 6.25 -52.49 -0.33 1.33 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.64 7.52 -52.49 -0.39 1.25 16 32 H 0.15 2.25 7.40 -52.49 -0.39 1.86 16 33 H 0.40 2.48 8.98 45.56 0.41 2.89 16 34 H 0.17 3.55 6.14 -52.49 -0.32 3.22 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -29.79 304.18 -6.42 -36.21 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -2.90 Total: 4.08 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.30 Total: -2.35 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.11 Total: -43.26 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.89 Total: -14.70 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.79 -6.42 -36.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703450404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.074 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds