Wall clock time and date at job start Mon Mar 30 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46494 * 119.99854 * 2 1 4 4 C 1.50705 * 109.47224 * 270.00407 * 3 2 1 5 5 H 1.08000 * 119.99942 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99914 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00055 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.46870 * 60.00112 * 8 6 4 10 10 H 1.48495 * 109.47141 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46925 * 300.00453 * 8 6 4 12 12 C 1.39145 * 119.99909 * 180.02562 * 2 1 3 13 13 C 1.39528 * 120.37122 * 359.97438 * 12 2 1 14 14 C 1.38111 * 118.46184 * 179.97438 * 13 12 2 15 15 C 1.39868 * 119.13433 * 359.97438 * 14 13 12 16 16 C 1.47080 * 119.66743 * 179.97438 * 15 14 13 17 17 C 1.34987 * 119.99906 * 179.72514 * 16 15 14 18 18 C 1.46231 * 119.99610 * 180.27858 * 17 16 15 19 19 O 1.21623 * 120.00319 * 0.02562 * 18 17 16 20 20 O 1.34916 * 119.99766 * 179.97438 * 18 17 16 21 21 N 1.33040 * 120.66522 * 0.26052 * 15 14 13 22 22 C 1.31367 * 121.67394 * 359.46244 * 21 15 14 23 23 H 1.09000 * 109.46841 * 269.99517 * 1 2 3 24 24 H 1.09001 * 109.47511 * 29.99481 * 1 2 3 25 25 H 1.08994 * 109.47229 * 150.00154 * 1 2 3 26 26 H 1.09004 * 109.47472 * 30.00669 * 3 2 1 27 27 H 1.09003 * 109.46885 * 150.00218 * 3 2 1 28 28 H 0.97003 * 119.99929 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.76747 * 359.95762 * 13 12 2 30 30 H 1.07999 * 120.42917 * 179.97438 * 14 13 12 31 31 H 1.08002 * 120.00219 * 0.02562 * 16 15 14 32 32 H 1.07992 * 119.99811 * 0.27881 * 17 16 15 33 33 H 0.96700 * 113.99879 * 179.97438 * 20 18 17 34 34 H 1.07995 * 119.60157 * 180.27142 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1268 2.8775 -1.6727 7 7 3.5550 3.6171 -0.6731 8 14 3.4387 3.4166 -3.4339 9 1 2.1412 3.5945 -4.1342 10 1 4.1821 4.7020 -3.4338 11 1 4.2410 2.3813 -4.1337 12 6 2.1608 -1.2050 -0.0005 13 6 1.4710 -2.4179 -0.0005 14 6 2.2010 -3.5903 -0.0016 15 6 3.5980 -3.5226 -0.0032 16 6 4.3870 -4.7639 -0.0038 17 6 5.7356 -4.7063 -0.0110 18 6 6.5200 -5.9405 -0.0177 19 8 5.9573 -7.0187 -0.0174 20 8 7.8679 -5.8830 -0.0254 21 7 4.2204 -2.3467 0.0015 22 6 3.5549 -1.2141 -0.0027 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8899 -0.5138 26 1 1.6085 2.0284 0.5139 27 1 3.1499 1.1383 0.5138 28 1 4.0325 4.4427 -0.8503 29 1 0.3912 -2.4393 0.0006 30 1 1.6996 -4.5468 -0.0013 31 1 3.8874 -5.7214 -0.0035 32 1 6.2352 -3.7489 -0.0117 33 1 8.2984 -6.7489 -0.0291 34 1 4.0943 -0.2785 -0.0031 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703450404.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:14 Heat of formation + Delta-G solvation = -55.321626 kcal Electronic energy + Delta-G solvation = -18419.906101 eV Core-core repulsion = 15317.312020 eV Total energy + Delta-G solvation = -3102.594081 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27274 -40.94361 -38.06425 -37.07130 -35.03878 -34.36802 -33.12557 -30.68287 -29.86679 -27.38804 -25.70139 -24.65586 -23.69874 -22.01656 -20.48584 -19.25804 -18.67966 -18.29964 -17.85905 -17.11254 -16.59669 -16.51249 -16.25243 -15.63191 -15.07104 -15.03327 -14.57833 -14.52178 -14.12437 -14.00948 -13.37138 -13.26403 -13.06984 -12.84934 -12.62625 -12.58884 -12.46972 -12.03055 -12.01244 -11.67658 -11.47945 -10.81231 -10.66213 -10.37233 -10.08341 -8.40155 -7.94615 -6.39377 -0.45644 0.45333 0.92338 1.38674 1.40954 1.48182 2.04599 2.28245 2.32060 2.45666 3.05973 3.10115 3.46763 3.89223 3.99700 4.14182 4.30598 4.34113 4.39166 4.56965 4.67323 4.80777 4.89226 5.01082 5.06119 5.09632 5.23209 5.35291 5.47579 5.55951 5.63388 5.73446 6.01103 6.26890 6.60587 6.75638 6.97878 7.16671 7.32358 8.81192 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.004401 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.951646 B = 6361.136753 C = 7319.977133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.605 5.605 3 C 0.259 3.741 4 C -0.547 4.547 5 H 0.053 0.947 6 C 0.018 3.982 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.192 3.808 13 C -0.180 4.180 14 C -0.070 4.070 15 C 0.011 3.989 16 C 0.033 3.967 17 C -0.213 4.213 18 C 0.522 3.478 19 O -0.553 6.553 20 O -0.502 6.502 21 N -0.444 5.444 22 C 0.009 3.991 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.268 0.732 29 H 0.165 0.835 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.135 0.865 33 H 0.426 0.574 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 -15.090 1.672 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.308 5.308 3 C 0.138 3.862 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.080 3.920 13 C -0.210 4.210 14 C -0.090 4.090 15 C -0.125 4.125 16 C 0.014 3.986 17 C -0.234 4.234 18 C 0.370 3.630 19 O -0.447 6.447 20 O -0.314 6.314 21 N -0.153 5.153 22 C -0.158 4.158 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.182 0.818 30 H 0.194 0.806 31 H 0.179 0.821 32 H 0.153 0.847 33 H 0.286 0.714 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.941 -14.553 1.734 14.784 hybrid contribution -0.044 0.536 -0.797 0.962 sum -1.986 -14.017 0.937 14.188 Atomic orbital electron populations 1.21824 0.78220 1.03457 1.01938 1.47031 1.06442 1.03528 1.73820 1.18962 0.91477 0.80003 0.95797 1.21705 1.36950 1.06726 0.93185 0.92914 1.25701 0.94969 0.96342 1.01177 1.70008 1.38551 1.14826 1.32783 0.85611 0.78584 0.77500 0.80022 1.19198 1.20565 1.20175 1.19376 0.92836 0.87887 0.91916 1.21346 1.01652 0.89629 1.08367 1.22255 0.92717 0.99997 0.94060 1.19850 0.91977 0.90995 1.09706 1.22327 0.92867 0.95935 0.87491 1.22121 0.94461 0.96137 1.10684 1.20940 0.81507 0.89264 0.71266 1.90890 1.72736 1.32173 1.48892 1.85062 1.19749 1.41222 1.85369 1.67386 1.41238 0.98198 1.08429 1.22236 0.90687 0.95915 1.06993 0.91812 0.91786 0.89475 0.96104 0.96519 0.92295 0.81786 0.80563 0.82058 0.84709 0.71425 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.52 10.20 127.77 1.30 3.83 16 2 N -0.61 -23.30 2.98 -725.95 -2.16 -25.46 16 3 C 0.26 12.46 4.91 85.64 0.42 12.88 16 4 C -0.55 -28.86 9.39 25.60 0.24 -28.62 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.02 0.98 5.46 84.65 0.46 1.44 16 7 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 8 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.19 7.00 6.57 38.58 0.25 7.25 16 13 C -0.18 -4.93 9.28 22.55 0.21 -4.72 16 14 C -0.07 -1.71 9.82 22.63 0.22 -1.49 16 15 C 0.01 0.32 6.70 41.68 0.28 0.60 16 16 C 0.03 0.84 9.44 23.84 0.22 1.07 16 17 C -0.21 -5.79 9.67 23.60 0.23 -5.56 16 18 C 0.52 13.11 8.23 69.90 0.58 13.68 16 19 O -0.55 -15.76 16.97 19.43 0.33 -15.43 16 20 O -0.50 -10.00 13.56 -58.31 -0.79 -10.79 16 21 N -0.44 -16.67 9.31 -184.71 -1.72 -18.39 16 22 C 0.01 0.35 10.37 85.05 0.88 1.23 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 25 H 0.09 1.96 6.22 -2.39 -0.01 1.95 16 26 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 27 H 0.02 0.88 6.21 -2.39 -0.01 0.86 16 28 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.16 3.35 6.25 -2.91 -0.02 3.33 16 30 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.16 3.29 7.52 -2.91 -0.02 3.27 16 32 H 0.14 4.08 7.40 -2.91 -0.02 4.05 16 33 H 0.43 4.18 8.98 -74.06 -0.66 3.51 16 34 H 0.14 6.26 6.14 -2.91 -0.02 6.25 16 Total: -1.00 -66.38 304.18 3.74 -62.63 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.47 Total: 12.99 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.30 Total: 1.59 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.59 Total: -95.63 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.46 Total: -26.22 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.38 3.74 -62.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703450404.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.310 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds