Wall clock time and date at job start Mon Mar 30 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47058 * 125.41226 * 2 1 4 4 C 1.54103 * 103.86249 * 180.23268 * 3 2 1 5 5 N 1.47047 * 103.86384 * 359.76979 * 4 3 2 6 6 C 1.40032 * 125.41130 * 180.02562 * 5 4 3 7 7 C 1.38911 * 119.99612 * 354.19825 * 6 5 4 8 8 C 1.38015 * 119.99577 * 179.77152 * 7 6 5 9 9 C 1.38907 * 120.00049 * 0.48197 * 8 7 6 10 10 O 1.35775 * 119.99919 * 179.74909 * 9 8 7 11 11 C 1.34819 * 117.00150 * 185.79852 * 10 9 8 12 12 H 1.08003 * 119.99508 * 5.45428 * 11 10 9 13 13 C 1.38625 * 120.00028 * 185.45968 * 11 10 9 14 14 N 1.31574 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99683 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47055 * 90.00020 * 15 13 11 17 17 H 1.48506 * 109.46719 * 209.99641 * 15 13 11 18 18 H 1.48500 * 109.47218 * 329.99774 * 15 13 11 19 19 C 1.38906 * 119.99922 * 359.77152 * 9 8 7 20 20 C 1.38009 * 120.00087 * 359.97438 * 19 9 8 21 21 C 1.33942 * 109.18053 * 359.97438 * 5 4 3 22 22 O 1.21591 * 123.04272 * 179.97438 * 21 5 4 23 23 H 1.09006 * 109.46907 * 180.21468 * 1 2 3 24 24 H 1.09005 * 109.46617 * 300.20685 * 1 2 3 25 25 H 1.08990 * 109.47151 * 60.20996 * 1 2 3 26 26 H 1.09004 * 110.74362 * 61.53938 * 3 2 1 27 27 H 1.08995 * 110.47480 * 298.79475 * 3 2 1 28 28 H 1.09003 * 110.54557 * 241.17158 * 4 3 2 29 29 H 1.08992 * 110.67185 * 118.42861 * 4 3 2 30 30 H 1.07997 * 120.00187 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.99909 * 180.23298 * 8 7 6 32 32 H 0.97000 * 119.99708 * 180.02562 * 14 13 11 33 33 H 1.07996 * 119.99614 * 179.97438 * 19 9 8 34 34 H 1.07999 * 119.99814 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0061 5 7 3.5538 -0.8248 -0.0031 6 6 4.5763 -1.7815 -0.0062 7 6 5.9006 -1.3822 -0.1341 8 6 6.9087 -2.3248 -0.1324 9 6 6.5984 -3.6735 -0.0128 10 8 7.5898 -4.6011 -0.0162 11 6 7.2160 -5.8965 -0.0179 12 1 6.1715 -6.1569 -0.1055 13 6 8.1723 -6.8939 0.0928 14 7 9.4447 -6.5766 0.1991 15 14 7.6542 -8.6887 0.0911 16 1 7.6421 -9.1991 -1.3033 17 1 8.6144 -9.4818 0.9001 18 1 6.2945 -8.8120 0.6753 19 6 5.2737 -4.0731 0.1098 20 6 4.2660 -3.1301 0.1134 21 6 2.2412 -1.0917 0.0041 22 8 1.7947 -2.2226 0.0075 23 1 -0.3633 -1.0277 0.0039 24 1 -0.3633 0.5171 0.8882 25 1 -0.3633 0.5105 -0.8918 26 1 2.1449 1.7947 0.8962 27 1 2.1372 1.7942 -0.8948 28 1 4.2900 0.9476 0.8871 29 1 4.2836 0.9448 -0.9039 30 1 6.1416 -0.3339 -0.2308 31 1 7.9387 -2.0141 -0.2281 32 1 10.1139 -7.2746 0.2762 33 1 5.0324 -5.1217 0.2024 34 1 3.2360 -3.4409 0.2083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707740188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:29 Heat of formation + Delta-G solvation = 3.995372 kcal Electronic energy + Delta-G solvation = -19064.733307 eV Core-core repulsion = 15964.711404 eV Total energy + Delta-G solvation = -3100.021903 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28644 -38.83991 -36.70267 -36.38323 -34.24764 -32.17233 -30.29210 -29.93724 -28.05271 -26.63210 -25.28305 -23.42947 -22.15644 -21.11241 -19.68017 -17.95313 -17.54781 -16.89990 -16.69382 -16.24441 -14.80240 -14.54162 -14.41306 -14.07183 -13.89449 -13.76416 -13.64081 -13.44185 -12.87315 -12.59968 -12.49484 -12.35209 -12.16695 -11.62161 -11.47695 -11.44590 -10.97406 -10.76835 -10.40189 -9.81430 -9.52531 -9.13690 -8.90755 -8.58030 -8.19656 -6.76318 -6.39655 -3.96792 2.15668 2.27660 2.38253 3.15749 3.18825 3.23602 3.30196 3.67143 4.02482 4.20961 4.56921 4.69885 4.74183 5.11003 5.15529 5.21734 5.25146 5.29604 5.46913 5.50843 5.58589 5.70692 5.91994 6.19468 6.29729 6.46067 6.57833 6.79050 6.99191 7.06134 7.20400 7.36629 7.49614 7.73105 7.84022 8.05701 8.61949 9.06526 9.76620 10.78569 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040004 B = 0.004280 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.756796 B = 6541.010874 C = 7211.074092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.642 5.642 3 C 0.096 3.904 4 C 0.089 3.911 5 N -0.559 5.559 6 C 0.080 3.920 7 C -0.107 4.107 8 C -0.170 4.170 9 C 0.137 3.863 10 O -0.179 6.179 11 C -0.389 4.389 12 H 0.092 0.908 13 C 0.039 3.961 14 N -0.865 5.865 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.208 4.208 20 C -0.098 4.098 21 C 0.694 3.306 22 O -0.572 6.572 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.269 0.731 33 H 0.132 0.868 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 15.872 -0.284 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.382 5.382 3 C -0.028 4.028 4 C -0.035 4.035 5 N -0.286 5.286 6 C -0.011 4.011 7 C -0.127 4.127 8 C -0.189 4.189 9 C 0.083 3.917 10 O -0.083 6.083 11 C -0.466 4.466 12 H 0.109 0.891 13 C -0.165 4.165 14 N -0.500 5.500 15 Si 0.764 3.236 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.228 4.228 20 C -0.118 4.118 21 C 0.396 3.604 22 O -0.450 6.450 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.863 15.114 -0.259 19.848 hybrid contribution -0.245 -0.620 0.022 0.667 sum -13.108 14.494 -0.238 19.543 Atomic orbital electron populations 1.21367 0.75802 1.03989 1.00959 1.47035 1.06212 1.05856 1.79063 1.22347 0.88478 0.88913 1.03016 1.22427 0.96774 0.80444 1.03842 1.44281 1.04370 1.05865 1.74122 1.17022 0.85586 0.87287 1.11225 1.20156 0.90121 0.98393 1.04061 1.19946 0.98847 0.90130 1.10023 1.19418 0.88382 0.90007 0.93878 1.83985 1.29750 1.15137 1.79396 1.21321 0.94697 0.78617 1.51942 0.89111 1.25262 0.94750 0.99920 0.96581 1.70047 1.00025 1.33853 1.46085 0.85728 0.78626 0.80590 0.78610 1.19907 1.20306 1.19157 1.21132 0.91999 1.00208 1.09426 1.21249 1.00995 0.90403 0.99190 1.15816 0.81396 0.84683 0.78490 1.90814 1.75817 1.20535 1.57823 0.89580 0.92317 0.92299 0.90028 0.90045 0.89522 0.89535 0.86794 0.85957 0.92112 0.85057 0.83731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.05 11.22 59.85 0.67 1.72 16 2 N -0.64 -7.59 3.36 -186.73 -0.63 -8.21 16 3 C 0.10 0.76 7.68 -3.16 -0.02 0.73 16 4 C 0.09 0.88 6.48 -3.17 -0.02 0.86 16 5 N -0.56 -8.88 3.16 -118.20 -0.37 -9.25 16 6 C 0.08 1.53 6.62 -83.62 -0.55 0.97 16 7 C -0.11 -1.91 9.48 -39.41 -0.37 -2.29 16 8 C -0.17 -3.58 9.99 -39.42 -0.39 -3.97 16 9 C 0.14 3.39 6.65 -39.09 -0.26 3.13 16 10 O -0.18 -5.19 9.75 0.00 0.00 -5.19 16 11 C -0.39 -11.14 9.44 30.88 0.29 -10.85 16 12 H 0.09 2.43 5.29 -52.48 -0.28 2.16 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 14 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 15 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.21 -4.86 9.13 -39.42 -0.36 -5.22 16 20 C -0.10 -2.12 9.28 -39.42 -0.37 -2.49 16 21 C 0.69 11.56 8.21 -88.40 -0.73 10.83 16 22 O -0.57 -11.66 13.99 5.29 0.07 -11.58 16 23 H 0.09 0.89 7.52 -51.93 -0.39 0.50 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 30 H 0.11 1.60 7.28 -52.49 -0.38 1.22 16 31 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 32 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.13 3.09 5.71 -52.49 -0.30 2.79 16 34 H 0.15 3.20 5.27 -52.49 -0.28 2.93 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -34.99 290.73 -6.74 -41.73 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -3.72 Total: 2.59 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.21 Total: -5.57 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.24 Total: -42.39 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.07 Total: -16.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.99 -6.74 -41.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707740188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.724 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds