Wall clock time and date at job start Mon Mar 30 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47058 * 125.41226 * 2 1 4 4 C 1.54103 * 103.86249 * 180.23268 * 3 2 1 5 5 N 1.47047 * 103.86384 * 359.76979 * 4 3 2 6 6 C 1.40032 * 125.41130 * 180.02562 * 5 4 3 7 7 C 1.38911 * 119.99612 * 354.19825 * 6 5 4 8 8 C 1.38015 * 119.99577 * 179.77152 * 7 6 5 9 9 C 1.38907 * 120.00049 * 0.48197 * 8 7 6 10 10 O 1.35775 * 119.99919 * 179.74909 * 9 8 7 11 11 C 1.34819 * 117.00150 * 185.79852 * 10 9 8 12 12 H 1.08003 * 119.99508 * 5.45428 * 11 10 9 13 13 C 1.38625 * 120.00028 * 185.45968 * 11 10 9 14 14 N 1.31574 * 120.00110 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99683 * 179.97438 * 13 11 10 16 16 H 1.48491 * 109.47055 * 90.00020 * 15 13 11 17 17 H 1.48506 * 109.46719 * 209.99641 * 15 13 11 18 18 H 1.48500 * 109.47218 * 329.99774 * 15 13 11 19 19 C 1.38906 * 119.99922 * 359.77152 * 9 8 7 20 20 C 1.38009 * 120.00087 * 359.97438 * 19 9 8 21 21 C 1.33942 * 109.18053 * 359.97438 * 5 4 3 22 22 O 1.21591 * 123.04272 * 179.97438 * 21 5 4 23 23 H 1.09006 * 109.46907 * 180.21468 * 1 2 3 24 24 H 1.09005 * 109.46617 * 300.20685 * 1 2 3 25 25 H 1.08990 * 109.47151 * 60.20996 * 1 2 3 26 26 H 1.09004 * 110.74362 * 61.53938 * 3 2 1 27 27 H 1.08995 * 110.47480 * 298.79475 * 3 2 1 28 28 H 1.09003 * 110.54557 * 241.17158 * 4 3 2 29 29 H 1.08992 * 110.67185 * 118.42861 * 4 3 2 30 30 H 1.07997 * 120.00187 * 0.02562 * 7 6 5 31 31 H 1.08004 * 119.99909 * 180.23298 * 8 7 6 32 32 H 0.97000 * 119.99708 * 180.02562 * 14 13 11 33 33 H 1.07996 * 119.99614 * 179.97438 * 19 9 8 34 34 H 1.07999 * 119.99814 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1985 0.0000 4 6 3.7504 0.6325 -0.0061 5 7 3.5538 -0.8248 -0.0031 6 6 4.5763 -1.7815 -0.0062 7 6 5.9006 -1.3822 -0.1341 8 6 6.9087 -2.3248 -0.1324 9 6 6.5984 -3.6735 -0.0128 10 8 7.5898 -4.6011 -0.0162 11 6 7.2160 -5.8965 -0.0179 12 1 6.1715 -6.1569 -0.1055 13 6 8.1723 -6.8939 0.0928 14 7 9.4447 -6.5766 0.1991 15 14 7.6542 -8.6887 0.0911 16 1 7.6421 -9.1991 -1.3033 17 1 8.6144 -9.4818 0.9001 18 1 6.2945 -8.8120 0.6753 19 6 5.2737 -4.0731 0.1098 20 6 4.2660 -3.1301 0.1134 21 6 2.2412 -1.0917 0.0041 22 8 1.7947 -2.2226 0.0075 23 1 -0.3633 -1.0277 0.0039 24 1 -0.3633 0.5171 0.8882 25 1 -0.3633 0.5105 -0.8918 26 1 2.1449 1.7947 0.8962 27 1 2.1372 1.7942 -0.8948 28 1 4.2900 0.9476 0.8871 29 1 4.2836 0.9448 -0.9039 30 1 6.1416 -0.3339 -0.2308 31 1 7.9387 -2.0141 -0.2281 32 1 10.1139 -7.2746 0.2762 33 1 5.0324 -5.1217 0.2024 34 1 3.2360 -3.4409 0.2083 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707740188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:29 Heat of formation + Delta-G solvation = -20.148066 kcal Electronic energy + Delta-G solvation = -19065.780245 eV Core-core repulsion = 15964.711404 eV Total energy + Delta-G solvation = -3101.068841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.43451 -40.61161 -38.38200 -37.60452 -35.51330 -34.18445 -31.92098 -31.11251 -29.33882 -27.73885 -27.17151 -24.57917 -23.69883 -22.58975 -20.95158 -19.82875 -19.05067 -18.41032 -17.82053 -17.38665 -16.44662 -16.18471 -15.56282 -15.53365 -15.28351 -15.21496 -14.82448 -14.74050 -14.63353 -14.15793 -13.54038 -13.41328 -13.37242 -13.13381 -12.87563 -12.83730 -12.55385 -12.43757 -12.13299 -11.53765 -11.08721 -10.82490 -10.53643 -9.89469 -9.73650 -8.46624 -8.40610 -6.12355 0.48740 0.57373 1.32145 1.34970 1.42831 1.51774 2.00477 2.18426 2.74522 2.83223 3.16086 3.48278 3.52301 3.77628 4.10693 4.13332 4.20042 4.43891 4.51986 4.55486 4.63169 4.65180 4.77622 4.87884 4.93118 4.96455 5.13314 5.16038 5.37820 5.54593 5.63392 5.73056 5.77604 6.02508 6.21037 6.53316 6.98436 7.38532 7.78090 8.76397 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040004 B = 0.004280 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.756796 B = 6541.010874 C = 7211.074092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.636 5.636 3 C 0.098 3.902 4 C 0.076 3.924 5 N -0.569 5.569 6 C 0.106 3.894 7 C -0.088 4.088 8 C -0.165 4.165 9 C 0.096 3.904 10 O -0.227 6.227 11 C -0.414 4.414 12 H 0.094 0.906 13 C -0.019 4.019 14 N -0.917 5.917 15 Si 1.015 2.985 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.215 4.215 20 C -0.119 4.119 21 C 0.677 3.323 22 O -0.623 6.623 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.169 0.831 31 H 0.135 0.865 32 H 0.273 0.727 33 H 0.116 0.884 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.627 19.287 -0.457 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.374 5.374 3 C -0.024 4.024 4 C -0.045 4.045 5 N -0.295 5.295 6 C 0.013 3.987 7 C -0.109 4.109 8 C -0.185 4.185 9 C 0.045 3.955 10 O -0.134 6.134 11 C -0.490 4.490 12 H 0.111 0.889 13 C -0.217 4.217 14 N -0.556 5.556 15 Si 0.834 3.166 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.235 4.235 20 C -0.139 4.139 21 C 0.379 3.621 22 O -0.505 6.505 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.187 0.813 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.547 18.658 -0.436 23.663 hybrid contribution -0.009 -1.288 0.067 1.290 sum -14.557 17.370 -0.369 22.666 Atomic orbital electron populations 1.21613 0.74155 1.03216 1.03641 1.47256 1.07239 1.05760 1.77164 1.22717 0.86023 0.87502 1.06157 1.22972 0.99005 0.76406 1.06073 1.44412 1.03527 1.07981 1.73629 1.17160 0.87224 0.87117 1.07205 1.20564 0.88446 1.00316 1.01537 1.20316 1.00543 0.89050 1.08546 1.19920 0.88299 0.91085 0.96147 1.83939 1.31449 1.15622 1.82350 1.21727 0.95215 0.79391 1.52685 0.88884 1.26483 0.94596 1.04749 0.95825 1.70171 1.01350 1.35591 1.48446 0.84646 0.78604 0.74133 0.79203 1.18741 1.19157 1.18284 1.21072 0.92323 1.00052 1.10034 1.21246 0.99989 0.91911 1.00756 1.16277 0.82085 0.85191 0.78526 1.90775 1.76744 1.23054 1.59910 0.92154 0.89581 0.89553 0.86953 0.86894 0.87415 0.87206 0.81326 0.84706 0.91769 0.86664 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.64 11.22 127.77 1.43 3.08 16 2 N -0.64 -12.78 3.36 -863.42 -2.90 -15.67 16 3 C 0.10 0.97 7.68 86.65 0.67 1.64 16 4 C 0.08 1.11 6.48 86.65 0.56 1.67 16 5 N -0.57 -16.37 3.16 -646.60 -2.04 -18.41 16 6 C 0.11 3.87 6.62 38.15 0.25 4.13 16 7 C -0.09 -2.90 9.48 22.38 0.21 -2.68 16 8 C -0.16 -6.86 9.99 22.38 0.22 -6.64 16 9 C 0.10 4.96 6.65 22.59 0.15 5.11 16 10 O -0.23 -13.94 9.75 -22.90 -0.22 -14.17 16 11 C -0.41 -25.09 9.44 67.91 0.64 -24.45 16 12 H 0.09 5.34 5.29 -2.91 -0.02 5.33 16 13 C -0.02 -1.10 5.49 84.82 0.47 -0.63 16 14 N -0.92 -56.98 13.67 21.61 0.30 -56.68 16 15 Si 1.01 44.60 29.55 68.60 2.03 46.63 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 C -0.21 -10.61 9.13 22.38 0.20 -10.40 16 20 C -0.12 -5.24 9.28 22.37 0.21 -5.03 16 21 C 0.68 21.40 8.21 179.57 1.47 22.87 16 22 O -0.62 -25.75 13.99 -4.00 -0.06 -25.80 16 23 H 0.06 1.20 7.52 -2.38 -0.02 1.18 16 24 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.11 1.13 8.11 -2.39 -0.02 1.11 16 30 H 0.17 3.71 7.28 -2.91 -0.02 3.69 16 31 H 0.14 5.22 8.06 -2.91 -0.02 5.19 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.12 5.89 5.71 -2.91 -0.02 5.87 16 34 H 0.14 6.28 5.27 -2.91 -0.02 6.26 16 Total: -1.00 -83.91 290.73 4.72 -79.20 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.12 Total: 16.25 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 6.49 Total: -11.34 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -4.65 Total: -90.76 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.28 Total: -39.97 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -83.91 4.72 -79.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707740188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.048 kcal (2) G-P(sol) polarization free energy of solvation -83.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds