Wall clock time and date at job start Mon Mar 30 2020 05:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47055 * 125.40886 * 2 1 4 4 C 1.54099 * 103.85881 * 179.76021 * 3 2 1 5 5 N 1.47048 * 103.86620 * 0.36698 * 4 3 2 6 6 C 1.40026 * 125.41460 * 179.86771 * 5 4 3 7 7 C 1.38712 * 120.10528 * 269.70706 * 6 5 4 8 8 C 1.38194 * 119.99946 * 180.02562 * 7 6 5 9 9 C 1.38344 * 120.20291 * 359.97438 * 8 7 6 10 10 C 1.38166 * 120.19944 * 0.02562 * 9 8 7 11 11 C 1.38742 * 119.99724 * 359.97438 * 10 9 8 12 12 O 1.35789 * 120.09513 * 180.02562 * 11 10 9 13 13 C 1.34805 * 117.00232 * 354.39762 * 12 11 10 14 14 H 1.07995 * 119.99943 * 5.07183 * 13 12 11 15 15 C 1.38632 * 119.99855 * 185.06616 * 13 12 11 16 16 N 1.31573 * 120.00315 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46810 * 59.99707 * 17 15 13 19 19 H 1.48495 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47054 * 299.99870 * 17 15 13 21 21 C 1.33948 * 125.40773 * 180.02562 * 2 1 3 22 22 O 1.21587 * 123.04501 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47161 * 300.02297 * 1 2 3 25 25 H 1.08996 * 109.47378 * 60.02484 * 1 2 3 26 26 H 1.09002 * 110.54708 * 298.59401 * 3 2 1 27 27 H 1.09001 * 110.54797 * 61.26111 * 3 2 1 28 28 H 1.09001 * 110.65357 * 241.72434 * 4 3 2 29 29 H 1.09001 * 110.44402 * 118.91752 * 4 3 2 30 30 H 1.08003 * 119.99765 * 0.03936 * 7 6 5 31 31 H 1.08001 * 119.89800 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.90162 * 180.27905 * 9 8 7 33 33 H 1.07994 * 120.00022 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00223 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7503 0.6325 0.0063 5 7 3.5538 -0.8247 0.0000 6 6 4.5762 -1.7815 -0.0001 7 6 5.0842 -2.2567 -1.2002 8 6 6.0930 -3.2013 -1.1978 9 6 6.5996 -3.6754 -0.0009 10 6 6.0997 -3.2078 1.1993 11 6 5.0870 -2.2595 1.2065 12 8 4.5946 -1.7981 2.3849 13 6 5.0497 -2.3847 3.5100 14 1 5.8328 -3.1262 3.4536 15 6 4.5126 -2.0360 4.7395 16 7 3.5589 -1.1321 4.8084 17 14 5.1438 -2.8484 6.2988 18 1 6.5948 -2.5704 6.4492 19 1 4.4120 -2.3050 7.4711 20 1 4.9268 -4.3150 6.2155 21 6 2.2411 -1.0917 -0.0005 22 8 1.7946 -2.2226 -0.0014 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8898 25 1 -0.3634 0.5134 -0.8902 26 1 2.1406 1.7934 -0.8962 27 1 2.1388 1.7947 0.8949 28 1 4.2823 0.9429 0.9056 29 1 4.2889 0.9499 -0.8867 30 1 4.6916 -1.8883 -2.1365 31 1 6.4876 -3.5699 -2.1331 32 1 7.3910 -4.4103 -0.0047 33 1 6.4978 -3.5798 2.1317 34 1 3.1829 -0.8884 5.6686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707742592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:33 Heat of formation + Delta-G solvation = 3.984163 kcal Electronic energy + Delta-G solvation = -19938.806414 eV Core-core repulsion = 16838.784025 eV Total energy + Delta-G solvation = -3100.022389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65688 -38.82813 -36.42749 -35.69485 -34.22945 -32.28877 -30.27295 -29.06853 -27.87758 -26.40292 -25.35880 -22.94359 -21.73839 -21.39714 -19.41687 -17.98234 -17.45643 -16.36740 -16.17384 -15.68627 -14.73793 -14.59390 -14.31267 -13.90496 -13.76395 -13.46472 -13.41480 -13.11822 -12.97500 -12.51477 -12.09542 -11.73240 -11.71367 -11.63144 -11.32335 -11.01190 -10.87054 -10.82026 -10.49158 -9.63262 -9.44724 -8.85137 -8.54457 -8.13430 -7.98085 -7.25565 -6.45951 -4.04485 2.02204 2.34293 2.92340 3.11886 3.14782 3.16425 3.77696 3.95377 4.24012 4.47368 4.79213 5.03875 5.17730 5.21276 5.31972 5.58986 5.62905 5.68104 5.76914 5.77156 5.95302 6.00972 6.09120 6.25557 6.38356 6.56365 6.65046 7.04624 7.07947 7.15793 7.29927 7.32444 7.53111 7.88725 7.98132 8.12754 8.98673 9.21744 9.67938 10.71193 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.008574 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.213090 B = 3264.946572 C = 4533.926890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.642 5.642 3 C 0.100 3.900 4 C 0.097 3.903 5 N -0.565 5.565 6 C 0.081 3.919 7 C -0.062 4.062 8 C -0.210 4.210 9 C -0.066 4.066 10 C -0.230 4.230 11 C 0.159 3.841 12 O -0.162 6.162 13 C -0.394 4.394 14 H 0.092 0.908 15 C 0.042 3.958 16 N -0.858 5.858 17 Si 0.941 3.059 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.707 3.293 22 O -0.581 6.581 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 4.987 -8.608 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.381 5.381 3 C -0.024 4.024 4 C -0.026 4.026 5 N -0.297 5.297 6 C -0.011 4.011 7 C -0.081 4.081 8 C -0.230 4.230 9 C -0.084 4.084 10 C -0.250 4.250 11 C 0.103 3.897 12 O -0.064 6.064 13 C -0.470 4.470 14 H 0.109 0.891 15 C -0.163 4.163 16 N -0.492 5.492 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.194 1.194 21 C 0.410 3.590 22 O -0.458 6.458 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.142 4.625 -8.339 9.537 hybrid contribution 0.363 -0.273 0.912 1.019 sum 0.221 4.351 -7.428 8.611 Atomic orbital electron populations 1.21287 0.76369 1.03626 1.00519 1.46885 1.05878 1.06033 1.79335 1.22284 0.88871 0.88904 1.02320 1.22365 0.96330 0.80881 1.02984 1.43720 1.03584 1.05085 1.77297 1.16130 0.95274 0.98995 0.90669 1.20782 0.95656 0.96107 0.95598 1.20459 1.02073 1.03054 0.97385 1.20828 0.97866 0.97579 0.92171 1.21095 1.01692 1.03372 0.98850 1.19626 0.91518 0.91431 0.87163 1.84008 1.58965 1.52911 1.10548 1.21310 1.20556 1.23007 0.82157 0.89073 1.25281 0.95815 0.96669 0.98528 1.70044 1.23973 1.29024 1.26135 0.85786 0.78799 0.79315 0.79574 1.19458 1.20268 1.19439 1.15790 0.81530 0.84426 0.77299 1.90875 1.75864 1.21094 1.57925 0.89915 0.92460 0.92785 0.90696 0.90266 0.89683 0.90627 0.86898 0.87075 0.87079 0.85109 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.76 11.21 59.85 0.67 2.43 16 2 N -0.64 -11.51 3.36 -186.73 -0.63 -12.14 16 3 C 0.10 1.40 7.68 -3.17 -0.02 1.38 16 4 C 0.10 1.59 7.62 -3.17 -0.02 1.57 16 5 N -0.56 -12.20 2.72 -118.09 -0.32 -12.52 16 6 C 0.08 1.84 5.46 -83.48 -0.46 1.38 16 7 C -0.06 -1.20 9.96 -39.42 -0.39 -1.59 16 8 C -0.21 -3.73 10.04 -39.56 -0.40 -4.13 16 9 C -0.07 -1.23 10.04 -39.57 -0.40 -1.63 16 10 C -0.23 -5.12 9.16 -39.42 -0.36 -5.48 16 11 C 0.16 4.01 6.67 -38.94 -0.26 3.75 16 12 O -0.16 -4.73 9.50 0.00 0.00 -4.73 16 13 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 14 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 15 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 16 N -0.86 -25.34 13.67 55.48 0.76 -24.58 16 17 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 C 0.71 16.23 8.26 -88.39 -0.73 15.50 16 22 O -0.58 -15.74 16.90 5.29 0.09 -15.65 16 23 H 0.08 1.30 7.52 -51.93 -0.39 0.91 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -36.02 297.80 -6.71 -42.72 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.90 Total: 3.29 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -2.17 Total: 3.35 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.19 Total: -49.24 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.09 Total: -20.38 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.02 -6.71 -42.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707742592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.708 kcal (2) G-P(sol) polarization free energy of solvation -36.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds