Wall clock time and date at job start Mon Mar 30 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47055 * 125.40886 * 2 1 4 4 C 1.54099 * 103.85881 * 179.76021 * 3 2 1 5 5 N 1.47048 * 103.86620 * 0.36698 * 4 3 2 6 6 C 1.40026 * 125.41460 * 179.86771 * 5 4 3 7 7 C 1.38712 * 120.10528 * 269.70706 * 6 5 4 8 8 C 1.38194 * 119.99946 * 180.02562 * 7 6 5 9 9 C 1.38344 * 120.20291 * 359.97438 * 8 7 6 10 10 C 1.38166 * 120.19944 * 0.02562 * 9 8 7 11 11 C 1.38742 * 119.99724 * 359.97438 * 10 9 8 12 12 O 1.35789 * 120.09513 * 180.02562 * 11 10 9 13 13 C 1.34805 * 117.00232 * 354.39762 * 12 11 10 14 14 H 1.07995 * 119.99943 * 5.07183 * 13 12 11 15 15 C 1.38632 * 119.99855 * 185.06616 * 13 12 11 16 16 N 1.31573 * 120.00315 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99922 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46810 * 59.99707 * 17 15 13 19 19 H 1.48495 * 109.47072 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47054 * 299.99870 * 17 15 13 21 21 C 1.33948 * 125.40773 * 180.02562 * 2 1 3 22 22 O 1.21587 * 123.04501 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.46914 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47161 * 300.02297 * 1 2 3 25 25 H 1.08996 * 109.47378 * 60.02484 * 1 2 3 26 26 H 1.09002 * 110.54708 * 298.59401 * 3 2 1 27 27 H 1.09001 * 110.54797 * 61.26111 * 3 2 1 28 28 H 1.09001 * 110.65357 * 241.72434 * 4 3 2 29 29 H 1.09001 * 110.44402 * 118.91752 * 4 3 2 30 30 H 1.08003 * 119.99765 * 0.03936 * 7 6 5 31 31 H 1.08001 * 119.89800 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.90162 * 180.27905 * 9 8 7 33 33 H 1.07994 * 120.00022 * 180.02562 * 10 9 8 34 34 H 0.96997 * 120.00223 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7503 0.6325 0.0063 5 7 3.5538 -0.8247 0.0000 6 6 4.5762 -1.7815 -0.0001 7 6 5.0842 -2.2567 -1.2002 8 6 6.0930 -3.2013 -1.1978 9 6 6.5996 -3.6754 -0.0009 10 6 6.0997 -3.2078 1.1993 11 6 5.0870 -2.2595 1.2065 12 8 4.5946 -1.7981 2.3849 13 6 5.0497 -2.3847 3.5100 14 1 5.8328 -3.1262 3.4536 15 6 4.5126 -2.0360 4.7395 16 7 3.5589 -1.1321 4.8084 17 14 5.1438 -2.8484 6.2988 18 1 6.5948 -2.5704 6.4492 19 1 4.4120 -2.3050 7.4711 20 1 4.9268 -4.3150 6.2155 21 6 2.2411 -1.0917 -0.0005 22 8 1.7946 -2.2226 -0.0014 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8898 25 1 -0.3634 0.5134 -0.8902 26 1 2.1406 1.7934 -0.8962 27 1 2.1388 1.7947 0.8949 28 1 4.2823 0.9429 0.9056 29 1 4.2889 0.9499 -0.8867 30 1 4.6916 -1.8883 -2.1365 31 1 6.4876 -3.5699 -2.1331 32 1 7.3910 -4.4103 -0.0047 33 1 6.4978 -3.5798 2.1317 34 1 3.1829 -0.8884 5.6686 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707742592.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:32 Heat of formation + Delta-G solvation = -21.071155 kcal Electronic energy + Delta-G solvation = -19939.892894 eV Core-core repulsion = 16838.784025 eV Total energy + Delta-G solvation = -3101.108869 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.21581 -40.56768 -38.19757 -37.40328 -35.69437 -34.30767 -31.73419 -30.70773 -29.40371 -27.76917 -27.33098 -24.35519 -23.38004 -22.98660 -21.01648 -19.87181 -19.17014 -17.99054 -17.68077 -17.21488 -16.43616 -16.29678 -15.91677 -15.56417 -15.32014 -15.17557 -14.77432 -14.71991 -14.62421 -14.14207 -13.59249 -13.34028 -13.04879 -12.95091 -12.82188 -12.61696 -12.53900 -12.38174 -12.18720 -11.48917 -11.31106 -10.83045 -10.17146 -9.74264 -9.37288 -9.02624 -8.49497 -6.17273 0.39729 0.68504 1.30850 1.42581 1.46902 1.48779 2.09359 2.15267 2.76553 2.89291 3.08039 3.45168 3.54678 4.04575 4.07381 4.15447 4.24268 4.44627 4.53969 4.55081 4.59920 4.67121 4.82488 4.82757 4.92924 5.03063 5.09451 5.16686 5.51929 5.59914 5.69301 5.74528 5.91316 5.99792 6.29161 6.57768 6.94206 7.53681 7.75696 8.72610 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.008574 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.213090 B = 3264.946572 C = 4533.926890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.641 5.641 3 C 0.104 3.896 4 C 0.091 3.909 5 N -0.575 5.575 6 C 0.062 3.938 7 C -0.066 4.066 8 C -0.182 4.182 9 C -0.062 4.062 10 C -0.244 4.244 11 C 0.113 3.887 12 O -0.215 6.215 13 C -0.419 4.419 14 H 0.101 0.899 15 C -0.020 4.020 16 N -0.915 5.915 17 Si 1.017 2.983 18 H -0.252 1.252 19 H -0.271 1.271 20 H -0.263 1.263 21 C 0.688 3.312 22 O -0.641 6.641 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.116 0.884 30 H 0.141 0.859 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.858 5.130 -10.837 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.380 5.380 3 C -0.018 4.018 4 C -0.031 4.031 5 N -0.307 5.307 6 C -0.029 4.029 7 C -0.085 4.085 8 C -0.200 4.200 9 C -0.079 4.079 10 C -0.264 4.264 11 C 0.061 3.939 12 O -0.121 6.121 13 C -0.495 4.495 14 H 0.118 0.882 15 C -0.218 4.218 16 N -0.552 5.552 17 Si 0.836 3.164 18 H -0.176 1.176 19 H -0.196 1.196 20 H -0.187 1.187 21 C 0.390 3.610 22 O -0.523 6.523 23 H 0.076 0.924 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.146 0.854 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.159 0.841 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.142 0.858 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.256 4.818 -10.626 11.735 hybrid contribution 0.016 -0.344 1.269 1.315 sum 1.272 4.474 -9.357 10.449 Atomic orbital electron populations 1.21557 0.74452 1.02941 1.03353 1.47160 1.07156 1.05838 1.77818 1.22590 0.86365 0.87636 1.05240 1.22670 0.98455 0.78221 1.03755 1.43961 1.03083 1.06960 1.76659 1.16693 0.95491 0.99575 0.91135 1.21201 0.95849 0.96125 0.95325 1.21105 0.99622 1.00274 0.99046 1.21307 0.98189 0.97569 0.90876 1.21298 1.01457 1.03159 1.00462 1.20308 0.93188 0.93326 0.87123 1.83973 1.61355 1.55080 1.11649 1.21823 1.21167 1.23571 0.82912 0.88154 1.26570 0.95950 0.97249 1.02038 1.70197 1.26418 1.31636 1.26987 0.84678 0.78966 0.78180 0.74571 1.17567 1.19556 1.18713 1.16289 0.82424 0.84842 0.77436 1.90798 1.77005 1.23674 1.60787 0.92402 0.91048 0.88359 0.85429 0.89548 0.92023 0.86641 0.84089 0.82115 0.82750 0.85802 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.24 11.21 127.77 1.43 4.67 16 2 N -0.64 -22.71 3.36 -863.43 -2.90 -25.61 16 3 C 0.10 2.70 7.68 86.65 0.67 3.37 16 4 C 0.09 2.91 7.62 86.65 0.66 3.57 16 5 N -0.57 -25.25 2.72 -646.24 -1.76 -27.00 16 6 C 0.06 2.88 5.46 38.24 0.21 3.09 16 7 C -0.07 -2.39 9.96 22.37 0.22 -2.17 16 8 C -0.18 -5.67 10.04 22.28 0.22 -5.45 16 9 C -0.06 -2.10 10.04 22.28 0.22 -1.88 16 10 C -0.24 -10.93 9.16 22.37 0.21 -10.72 16 11 C 0.11 5.95 6.67 22.69 0.15 6.10 16 12 O -0.22 -13.38 9.50 -22.92 -0.22 -13.60 16 13 C -0.42 -25.18 9.49 67.91 0.64 -24.53 16 14 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 15 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 16 N -0.91 -57.32 13.67 21.61 0.30 -57.03 16 17 Si 1.02 44.05 29.55 68.60 2.03 46.08 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 C 0.69 32.46 8.26 179.57 1.48 33.95 16 22 O -0.64 -36.47 16.90 -3.99 -0.07 -36.54 16 23 H 0.06 1.88 7.52 -2.39 -0.02 1.86 16 24 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -87.48 297.80 5.08 -82.39 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.11 Total: 22.02 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.59 Total: 9.29 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -4.36 Total: -109.64 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.29 Total: -50.14 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -87.48 5.08 -82.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707742592.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.322 kcal (2) G-P(sol) polarization free energy of solvation -87.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds