Wall clock time and date at job start Mon Mar 30 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00067 * 2 1 4 4 C 1.46896 * 111.00294 * 123.95531 * 2 1 3 5 5 C 1.53006 * 109.47244 * 75.70249 * 4 2 1 6 6 H 1.08998 * 110.77920 * 307.15566 * 5 4 2 7 7 C 1.55402 * 110.85068 * 70.45060 * 5 4 2 8 8 C 1.54908 * 101.66784 * 153.70194 * 7 5 4 9 9 N 1.47435 * 104.83051 * 323.07529 * 8 7 5 10 10 S 1.65599 * 125.64906 * 204.16446 * 9 8 7 11 11 O 1.42098 * 106.39990 * 23.49604 * 10 9 8 12 12 O 1.42089 * 106.40231 * 156.41612 * 10 9 8 13 13 C 1.76196 * 107.21538 * 269.95883 * 10 9 8 14 14 H 1.07998 * 120.00493 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00062 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00292 * 179.97438 * 15 13 10 17 17 Si 1.86806 * 119.99614 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47161 * 89.99974 * 17 15 13 19 19 H 1.48498 * 109.46635 * 209.99669 * 17 15 13 20 20 H 1.48501 * 109.47146 * 329.99838 * 17 15 13 21 21 C 1.47020 * 108.70234 * 24.12592 * 9 8 7 22 22 H 1.09002 * 109.47106 * 296.04829 * 1 2 3 23 23 H 1.09005 * 109.47398 * 56.04324 * 1 2 3 24 24 H 1.08999 * 109.47438 * 176.04470 * 1 2 3 25 25 H 1.09003 * 109.47387 * 188.83065 * 3 2 1 26 26 H 1.08994 * 109.47454 * 308.83482 * 3 2 1 27 27 H 1.09009 * 109.47173 * 68.83681 * 3 2 1 28 28 H 1.09004 * 109.47002 * 315.70554 * 4 2 1 29 29 H 1.08997 * 109.47867 * 195.70669 * 4 2 1 30 30 H 1.09001 * 110.89463 * 35.62914 * 7 5 4 31 31 H 1.09004 * 111.03831 * 271.83835 * 7 5 4 32 32 H 1.09001 * 110.36928 * 204.23826 * 8 7 5 33 33 H 1.08999 * 110.36625 * 81.91034 * 8 7 5 34 34 H 0.96998 * 119.99868 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.88115 * 118.35811 * 21 9 8 36 36 H 1.08994 * 109.88793 * 239.37059 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8456 -2.2627 0.8576 6 1 0.8177 -2.5047 0.5875 7 6 2.8280 -2.7180 -0.2572 8 6 3.0223 -4.2154 0.0888 9 7 3.0272 -4.2647 1.5624 10 16 3.7348 -5.4427 2.4863 11 8 4.7474 -6.0302 1.6808 12 8 3.9931 -4.8568 3.7547 13 6 2.5234 -6.6939 2.7536 14 1 1.5343 -6.5865 2.3335 15 6 2.8381 -7.8103 3.4991 16 7 1.9338 -8.7439 3.6990 17 14 4.5488 -7.9959 4.2263 18 1 4.5794 -7.3883 5.5810 19 1 4.8919 -9.4374 4.3225 20 1 5.5348 -7.3094 3.3535 21 6 2.3005 -3.0942 2.0756 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0736 1.3467 -0.1578 26 1 1.5240 1.9416 -0.8004 27 1 1.7792 1.8436 0.9584 28 1 1.4389 -0.5074 2.0384 29 1 3.0492 -0.5267 1.2802 30 1 3.7711 -2.1758 -0.1894 31 1 2.3814 -2.5999 -1.2445 32 1 3.9722 -4.5758 -0.3059 33 1 2.1968 -4.8066 -0.3077 34 1 2.1552 -9.5291 4.2237 35 1 1.4316 -3.4190 2.6480 36 1 2.9581 -2.4971 2.7072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708424008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:57 Heat of formation + Delta-G solvation = -72.267982 kcal Electronic energy + Delta-G solvation = -18598.773896 eV Core-core repulsion = 15630.888917 eV Total energy + Delta-G solvation = -2967.884979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.77255 -36.68771 -35.61798 -34.40555 -33.00647 -31.21586 -29.02945 -27.73990 -26.36105 -25.98779 -22.12795 -21.82797 -19.93348 -18.69735 -17.44582 -16.70703 -16.25899 -15.29317 -15.20019 -14.99438 -14.60660 -14.12920 -13.45815 -13.36792 -13.02348 -12.97215 -12.70184 -12.54111 -12.40668 -11.96757 -11.84198 -11.48727 -11.41133 -11.15904 -10.79411 -10.73086 -10.71367 -10.58500 -10.47476 -10.27293 -9.80375 -9.19002 -9.09789 -8.48137 -8.15389 -6.78293 -5.31308 2.02110 3.08320 3.18999 3.28164 3.78883 3.96995 4.27672 4.59919 4.78484 4.84930 4.94820 5.07413 5.19508 5.30107 5.35461 5.43603 5.52481 5.58481 5.65853 5.68642 5.73957 5.82494 5.88205 6.04528 6.05124 6.20018 6.29075 6.36396 6.52989 6.77090 6.88351 6.90311 7.29481 7.51364 8.24837 8.72865 10.34327 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043684 B = 0.005266 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.820028 B = 5315.685642 C = 5425.201263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.063 3.937 5 C -0.093 4.093 6 H 0.083 0.917 7 C -0.110 4.110 8 C 0.117 3.883 9 N -1.012 6.012 10 S 2.691 3.309 11 O -1.005 7.005 12 O -1.008 7.008 13 C -1.016 5.016 14 H 0.120 0.880 15 C 0.153 3.847 16 N -0.824 5.824 17 Si 0.801 3.199 18 H -0.246 1.246 19 H -0.254 1.254 20 H -0.220 1.220 21 C 0.130 3.870 22 H 0.024 0.976 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.280 0.720 35 H 0.064 0.936 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 15.753 -7.040 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.065 4.065 5 C -0.113 4.113 6 H 0.102 0.898 7 C -0.149 4.149 8 C -0.009 4.009 9 N -0.849 5.849 10 S 2.795 3.205 11 O -0.995 6.995 12 O -0.998 6.998 13 C -1.151 5.151 14 H 0.138 0.862 15 C -0.067 4.067 16 N -0.454 5.454 17 Si 0.621 3.379 18 H -0.170 1.170 19 H -0.178 1.178 20 H -0.142 1.142 21 C 0.003 3.997 22 H 0.043 0.957 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.079 15.328 -7.043 16.903 hybrid contribution -0.457 -0.219 1.122 1.231 sum -1.536 15.109 -5.921 16.300 Atomic orbital electron populations 1.22447 0.87458 1.02555 1.00186 1.61918 1.07926 1.13455 1.43598 1.22383 1.00943 0.88935 1.00084 1.22177 1.00365 0.93005 0.91002 1.22251 1.00358 0.93119 0.95610 0.89840 1.22726 0.99066 0.94720 0.98379 1.21950 1.01921 0.96720 0.80315 1.58581 1.72594 1.38249 1.15446 1.00940 0.74487 0.73095 0.71958 1.93450 1.58643 1.76893 1.70518 1.93392 1.86133 1.78786 1.41531 1.30571 1.17264 1.20968 1.46247 0.86156 1.24438 0.97343 0.93419 0.91460 1.69989 1.34156 1.08035 1.33178 0.87878 0.84721 0.81740 0.83589 1.16985 1.17817 1.14167 1.21521 0.96007 0.86725 0.95475 0.95727 0.91631 0.90971 0.91326 0.91593 0.95783 0.94149 0.90480 0.91146 0.90181 0.90416 0.92030 0.90929 0.91810 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.06 0.56 0.76 16 2 N -0.55 -5.52 4.85 -251.26 -1.22 -6.74 16 3 C 0.02 0.21 9.52 60.06 0.57 0.78 16 4 C 0.06 0.70 4.29 -3.82 -0.02 0.68 16 5 C -0.09 -1.21 3.02 -88.65 -0.27 -1.48 16 6 H 0.08 1.03 6.82 -51.93 -0.35 0.68 16 7 C -0.11 -1.45 6.45 -24.45 -0.16 -1.61 16 8 C 0.12 1.97 7.11 -2.52 -0.02 1.95 16 9 N -1.01 -20.63 3.70 -111.42 -0.41 -21.04 16 10 S 2.69 69.71 4.43 -107.50 -0.48 69.23 16 11 O -1.00 -27.63 15.34 -57.18 -0.88 -28.51 16 12 O -1.01 -27.62 16.42 -57.18 -0.94 -28.56 16 13 C -1.02 -29.19 10.29 30.60 0.31 -28.87 16 14 H 0.12 3.50 8.06 -52.49 -0.42 3.08 16 15 C 0.15 4.48 5.47 -17.82 -0.10 4.38 16 16 N -0.82 -24.23 13.96 55.43 0.77 -23.46 16 17 Si 0.80 20.94 26.54 -169.99 -4.51 16.43 16 18 H -0.25 -6.27 7.11 56.52 0.40 -5.86 16 19 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.22 -5.84 5.61 56.52 0.32 -5.53 16 21 C 0.13 2.18 6.58 -3.06 -0.02 2.16 16 22 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 23 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 24 H 0.07 0.65 6.81 -51.93 -0.35 0.30 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.47 8.04 -51.93 -0.42 0.06 16 27 H 0.02 0.19 8.13 -51.92 -0.42 -0.23 16 28 H 0.04 0.43 7.96 -51.93 -0.41 0.02 16 29 H 0.08 0.85 7.82 -51.93 -0.41 0.44 16 30 H 0.07 0.91 7.96 -51.93 -0.41 0.49 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.33 7.78 -51.93 -0.40 0.92 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -33.17 301.41 -8.01 -41.17 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.76 Total: -1.83 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 0.87 Total: -21.25 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.86 Total: -51.23 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.82 Total: -57.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.51 Total: 16.43 kcal Atomic # 16 Polarization: 69.71 SS G_CDS: -0.48 Total: 69.23 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.17 -8.01 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.093 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds