Wall clock time and date at job start Mon Mar 30 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46899 * 111.00067 * 2 1 4 4 C 1.46896 * 111.00294 * 123.95531 * 2 1 3 5 5 C 1.53006 * 109.47244 * 75.70249 * 4 2 1 6 6 H 1.08998 * 110.77920 * 307.15566 * 5 4 2 7 7 C 1.55402 * 110.85068 * 70.45060 * 5 4 2 8 8 C 1.54908 * 101.66784 * 153.70194 * 7 5 4 9 9 N 1.47435 * 104.83051 * 323.07529 * 8 7 5 10 10 S 1.65599 * 125.64906 * 204.16446 * 9 8 7 11 11 O 1.42098 * 106.39990 * 23.49604 * 10 9 8 12 12 O 1.42089 * 106.40231 * 156.41612 * 10 9 8 13 13 C 1.76196 * 107.21538 * 269.95883 * 10 9 8 14 14 H 1.07998 * 120.00493 * 359.97438 * 13 10 9 15 15 C 1.37883 * 120.00062 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00292 * 179.97438 * 15 13 10 17 17 Si 1.86806 * 119.99614 * 0.02562 * 15 13 10 18 18 H 1.48501 * 109.47161 * 89.99974 * 17 15 13 19 19 H 1.48498 * 109.46635 * 209.99669 * 17 15 13 20 20 H 1.48501 * 109.47146 * 329.99838 * 17 15 13 21 21 C 1.47020 * 108.70234 * 24.12592 * 9 8 7 22 22 H 1.09002 * 109.47106 * 296.04829 * 1 2 3 23 23 H 1.09005 * 109.47398 * 56.04324 * 1 2 3 24 24 H 1.08999 * 109.47438 * 176.04470 * 1 2 3 25 25 H 1.09003 * 109.47387 * 188.83065 * 3 2 1 26 26 H 1.08994 * 109.47454 * 308.83482 * 3 2 1 27 27 H 1.09009 * 109.47173 * 68.83681 * 3 2 1 28 28 H 1.09004 * 109.47002 * 315.70554 * 4 2 1 29 29 H 1.08997 * 109.47867 * 195.70669 * 4 2 1 30 30 H 1.09001 * 110.89463 * 35.62914 * 7 5 4 31 31 H 1.09004 * 111.03831 * 271.83835 * 7 5 4 32 32 H 1.09001 * 110.36928 * 204.23826 * 8 7 5 33 33 H 1.08999 * 110.36625 * 81.91034 * 8 7 5 34 34 H 0.96998 * 119.99868 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.88115 * 118.35811 * 21 9 8 36 36 H 1.08994 * 109.88793 * 239.37059 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.8456 -2.2627 0.8576 6 1 0.8177 -2.5047 0.5875 7 6 2.8280 -2.7180 -0.2572 8 6 3.0223 -4.2154 0.0888 9 7 3.0272 -4.2647 1.5624 10 16 3.7348 -5.4427 2.4863 11 8 4.7474 -6.0302 1.6808 12 8 3.9931 -4.8568 3.7547 13 6 2.5234 -6.6939 2.7536 14 1 1.5343 -6.5865 2.3335 15 6 2.8381 -7.8103 3.4991 16 7 1.9338 -8.7439 3.6990 17 14 4.5488 -7.9959 4.2263 18 1 4.5794 -7.3883 5.5810 19 1 4.8919 -9.4374 4.3225 20 1 5.5348 -7.3094 3.3535 21 6 2.3005 -3.0942 2.0756 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0736 1.3467 -0.1578 26 1 1.5240 1.9416 -0.8004 27 1 1.7792 1.8436 0.9584 28 1 1.4389 -0.5074 2.0384 29 1 3.0492 -0.5267 1.2802 30 1 3.7711 -2.1758 -0.1894 31 1 2.3814 -2.5999 -1.2445 32 1 3.9722 -4.5758 -0.3059 33 1 2.1968 -4.8066 -0.3077 34 1 2.1552 -9.5291 4.2237 35 1 1.4316 -3.4190 2.6480 36 1 2.9581 -2.4971 2.7072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708424008.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:57 Heat of formation + Delta-G solvation = -98.691673 kcal Electronic energy + Delta-G solvation = -18599.919713 eV Core-core repulsion = 15630.888917 eV Total energy + Delta-G solvation = -2969.030796 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89346 -37.74756 -37.65208 -36.53994 -35.22089 -32.43651 -30.29436 -28.58281 -28.38552 -27.00505 -23.27957 -22.93046 -20.99822 -20.71375 -19.35850 -18.67644 -17.51216 -17.09512 -16.30361 -16.04346 -15.96219 -15.53509 -15.26857 -15.01865 -14.72057 -14.26321 -14.18488 -13.67031 -13.48903 -13.26937 -13.15555 -12.92077 -12.77708 -12.65189 -12.59623 -12.49105 -12.27752 -11.86532 -11.80176 -11.69693 -11.38516 -11.35015 -11.22901 -9.78087 -9.22070 -8.99812 -7.56257 0.04632 1.02174 1.11781 1.18946 1.86672 2.37991 2.46448 3.00596 3.33446 3.65965 3.75727 3.87402 4.20348 4.32837 4.41224 4.47135 4.51603 4.57731 4.63885 4.66938 4.78286 4.80059 4.89339 5.04274 5.09827 5.11144 5.14709 5.16761 5.22558 5.39588 5.46999 5.71566 5.97836 6.12473 6.18705 6.49765 8.18361 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043684 B = 0.005266 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.820028 B = 5315.685642 C = 5425.201263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.554 5.554 3 C 0.024 3.976 4 C 0.067 3.933 5 C -0.081 4.081 6 H 0.092 0.908 7 C -0.096 4.096 8 C 0.103 3.897 9 N -1.016 6.016 10 S 2.712 3.288 11 O -1.024 7.024 12 O -1.026 7.026 13 C -1.041 5.041 14 H 0.102 0.898 15 C 0.107 3.893 16 N -0.854 5.854 17 Si 0.825 3.175 18 H -0.237 1.237 19 H -0.215 1.215 20 H -0.229 1.229 21 C 0.116 3.884 22 H 0.026 0.974 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.292 0.708 35 H 0.058 0.942 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.894 17.283 -7.795 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.278 5.278 3 C -0.124 4.124 4 C -0.061 4.061 5 C -0.101 4.101 6 H 0.110 0.890 7 C -0.135 4.135 8 C -0.022 4.022 9 N -0.855 5.855 10 S 2.814 3.186 11 O -1.014 7.014 12 O -1.017 7.017 13 C -1.174 5.174 14 H 0.120 0.880 15 C -0.109 4.109 16 N -0.484 5.484 17 Si 0.641 3.359 18 H -0.160 1.160 19 H -0.137 1.137 20 H -0.152 1.152 21 C -0.009 4.009 22 H 0.044 0.956 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.883 16.829 -7.789 18.565 hybrid contribution -0.617 -0.625 1.289 1.560 sum -1.500 16.204 -6.500 17.523 Atomic orbital electron populations 1.22489 0.86788 1.02617 1.00874 1.61898 1.08623 1.14398 1.42847 1.22428 1.01173 0.88051 1.00705 1.22072 1.00736 0.91639 0.91678 1.22187 1.00602 0.93878 0.93452 0.88970 1.22696 0.99683 0.91590 0.99484 1.22302 1.02008 0.99821 0.78057 1.58226 1.72616 1.37774 1.16903 1.00057 0.73788 0.72931 0.71789 1.93414 1.59203 1.78002 1.70819 1.93355 1.86343 1.78910 1.43078 1.31095 1.17582 1.22493 1.46218 0.87992 1.25200 1.00325 0.93470 0.91938 1.70010 1.35629 1.08786 1.33968 0.87496 0.81064 0.84179 0.83121 1.16049 1.13720 1.15187 1.21849 0.95613 0.86020 0.97466 0.95568 0.90350 0.91343 0.91111 0.90362 0.95566 0.93848 0.90286 0.90450 0.87699 0.90925 0.91485 0.89738 0.92355 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.40 127.69 1.20 1.51 16 2 N -0.55 -9.59 4.85 -948.86 -4.60 -14.20 16 3 C 0.02 0.34 9.52 127.69 1.22 1.55 16 4 C 0.07 1.33 4.29 86.31 0.37 1.70 16 5 C -0.08 -1.93 3.02 -9.52 -0.03 -1.96 16 6 H 0.09 2.07 6.82 -2.39 -0.02 2.05 16 7 C -0.10 -2.28 6.45 32.07 0.21 -2.07 16 8 C 0.10 3.36 7.11 86.85 0.62 3.98 16 9 N -1.02 -41.00 3.70 -506.41 -1.87 -42.87 16 10 S 2.71 141.12 4.43 -56.49 -0.25 140.87 16 11 O -1.02 -56.42 15.34 -128.00 -1.96 -58.39 16 12 O -1.03 -56.30 16.42 -128.00 -2.10 -58.40 16 13 C -1.04 -61.00 10.29 67.74 0.70 -60.30 16 14 H 0.10 6.14 8.06 -2.91 -0.02 6.12 16 15 C 0.11 6.35 5.47 84.66 0.46 6.81 16 16 N -0.85 -50.55 13.96 21.45 0.30 -50.25 16 17 Si 0.82 41.96 26.54 68.60 1.82 43.78 16 18 H -0.24 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.22 -9.55 7.11 99.48 0.71 -8.85 16 20 H -0.23 -12.01 5.61 99.48 0.56 -11.45 16 21 C 0.12 3.82 6.58 86.73 0.57 4.39 16 22 H 0.03 0.38 8.09 -2.39 -0.02 0.36 16 23 H 0.08 0.97 8.07 -2.38 -0.02 0.96 16 24 H 0.07 1.07 6.81 -2.39 -0.02 1.06 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 0.89 8.04 -2.39 -0.02 0.87 16 27 H 0.03 0.35 8.13 -2.38 -0.02 0.33 16 28 H 0.04 0.84 7.96 -2.39 -0.02 0.82 16 29 H 0.08 1.54 7.82 -2.39 -0.02 1.52 16 30 H 0.08 1.77 7.96 -2.39 -0.02 1.75 16 31 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.07 2.43 7.78 -2.39 -0.02 2.41 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.29 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 Total: -1.00 -70.59 301.41 -2.46 -73.05 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.90 Total: 10.80 kcal Atomic # 6 Polarization: -49.71 SS G_CDS: 5.31 Total: -44.40 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -6.18 Total: -107.32 kcal Atomic # 8 Polarization: -112.72 SS G_CDS: -4.06 Total: -116.78 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.82 Total: 43.78 kcal Atomic # 16 Polarization: 141.12 SS G_CDS: -0.25 Total: 140.87 kcal Total: -70.59 -2.46 -73.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708424008.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.642 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds