Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 120.00066 * 2 1 4 4 C 1.50703 * 119.99833 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.46874 * 179.97438 * 4 2 1 6 6 C 1.34779 * 120.00019 * 179.97438 * 5 4 2 7 7 O 1.21577 * 119.99878 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00290 * 179.97438 * 6 5 4 9 9 C 1.39237 * 120.00137 * 184.29366 * 8 6 5 10 10 C 1.39482 * 119.83071 * 324.70804 * 9 8 6 11 11 C 1.36376 * 120.16549 * 180.30043 * 10 9 8 12 12 C 1.40873 * 119.82940 * 359.47768 * 11 10 9 13 13 C 1.41148 * 120.16474 * 180.25788 * 12 11 10 14 14 H 1.08003 * 120.00334 * 215.00970 * 13 12 11 15 15 C 1.39898 * 120.00538 * 35.01179 * 13 12 11 16 16 N 1.30884 * 119.99369 * 355.54432 * 15 13 12 17 17 Si 1.86797 * 120.00494 * 175.54225 * 15 13 12 18 18 H 1.48506 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47156 * 119.99899 * 17 15 13 20 20 H 1.48496 * 109.47126 * 239.99956 * 17 15 13 21 21 C 1.40866 * 119.66856 * 0.51413 * 12 11 10 22 22 C 1.36380 * 119.83103 * 359.74031 * 21 12 11 23 23 H 1.09000 * 109.46919 * 269.99974 * 1 2 3 24 24 H 1.08998 * 109.47083 * 29.99517 * 1 2 3 25 25 H 1.09000 * 109.47312 * 149.99915 * 1 2 3 26 26 H 1.08999 * 109.47452 * 59.99914 * 4 2 1 27 27 H 1.08996 * 109.47006 * 299.99247 * 4 2 1 28 28 H 0.96999 * 120.00625 * 0.02562 * 5 4 2 29 29 H 0.97004 * 119.99820 * 4.29754 * 8 6 5 30 30 H 1.07996 * 119.91977 * 0.02562 * 10 9 8 31 31 H 1.08000 * 120.08904 * 179.70241 * 11 10 9 32 32 H 0.97001 * 119.99708 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.08457 * 179.71252 * 21 12 11 34 34 H 1.07999 * 119.91469 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 -0.0011 6 6 4.5767 -2.0618 -0.0011 7 8 4.1714 -3.2081 -0.0012 8 7 5.9017 -1.8156 -0.0021 9 6 6.8059 -2.8706 -0.0924 10 6 6.5155 -4.0879 0.5235 11 6 7.3989 -5.1239 0.4446 12 6 8.6022 -4.9657 -0.2706 13 6 9.5191 -6.0349 -0.3615 14 1 10.5807 -5.8367 -0.3705 15 6 9.0528 -7.3516 -0.4398 16 7 7.7714 -7.5989 -0.3412 17 14 10.2590 -8.7567 -0.6853 18 1 11.6397 -8.2155 -0.7653 19 1 10.1624 -9.6977 0.4594 20 1 9.9341 -9.4737 -1.9443 21 6 8.8883 -3.7333 -0.8901 22 6 7.9975 -2.7048 -0.7980 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9972 -1.8764 -0.8908 27 1 1.9972 -1.8770 0.8892 28 1 4.0242 -0.1229 -0.0006 29 1 6.2256 -0.9033 0.0602 30 1 5.5907 -4.2090 1.0681 31 1 7.1749 -6.0643 0.9260 32 1 7.4480 -8.5118 -0.3959 33 1 9.8109 -3.6032 -1.4361 34 1 8.2156 -1.7592 -1.2721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711262886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -41.336409 kcal Electronic energy + Delta-G solvation = -18523.903831 eV Core-core repulsion = 15421.916195 eV Total energy + Delta-G solvation = -3101.987636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27741 -39.35871 -37.35908 -34.60034 -34.12128 -32.82640 -31.13434 -29.45183 -28.96145 -27.00373 -24.60755 -21.54973 -21.02717 -20.35770 -19.85259 -18.03295 -17.24387 -16.94317 -16.04384 -15.62917 -15.45445 -15.12284 -14.74724 -14.24312 -13.87665 -13.51998 -13.25747 -12.83840 -12.66459 -12.61147 -12.36796 -12.04363 -11.69124 -11.41465 -11.14287 -10.87012 -10.46841 -10.10559 -9.96430 -9.83690 -9.58362 -9.11159 -8.94798 -8.71919 -7.46476 -6.81592 -6.54259 -4.27749 1.55208 2.69773 2.92278 3.09760 3.14008 3.17014 3.20948 3.70006 3.75369 4.03069 4.61037 4.69066 4.77873 4.96110 5.04945 5.28187 5.31536 5.54773 5.71085 6.18696 6.39615 6.49622 6.83743 6.87279 7.08308 7.10025 7.20341 7.33344 7.42686 7.70552 7.87748 8.06430 8.15134 8.34944 8.49593 8.73270 8.97386 8.99133 9.12799 10.36981 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047600 B = 0.003616 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.089761 B = 7741.319857 C = 8220.959550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.351 3.649 3 O -0.458 6.458 4 C 0.088 3.912 5 N -0.750 5.750 6 C 0.696 3.304 7 O -0.575 6.575 8 N -0.666 5.666 9 C 0.024 3.976 10 C -0.094 4.094 11 C -0.143 4.143 12 C 0.098 3.902 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.809 5.809 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.203 4.203 22 C -0.116 4.116 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.401 0.599 29 H 0.392 0.608 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.277 0.723 33 H 0.096 0.904 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.969 10.858 1.051 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.227 3.773 3 O -0.332 6.332 4 C -0.038 4.038 5 N -0.410 5.410 6 C 0.397 3.603 7 O -0.451 6.451 8 N -0.312 5.312 9 C -0.069 4.069 10 C -0.114 4.114 11 C -0.163 4.163 12 C 0.096 3.904 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.436 5.436 17 Si 0.739 3.261 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.201 1.201 21 C -0.223 4.223 22 C -0.136 4.136 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.236 0.764 29 H 0.225 0.775 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.201 10.151 1.033 15.152 hybrid contribution 0.612 0.119 -0.270 0.679 sum -10.590 10.270 0.763 14.771 Atomic orbital electron populations 1.22227 0.93155 1.05282 1.05095 1.24867 0.92617 0.89872 0.69939 1.90407 1.71895 1.34912 1.35993 1.21513 0.80793 0.96411 1.05039 1.44869 1.04843 1.09178 1.82154 1.15951 0.81304 0.84551 0.78523 1.90937 1.77938 1.19388 1.56877 1.42079 1.03382 1.09324 1.76431 1.17101 0.91913 0.89155 1.08693 1.20670 0.98964 0.92599 0.99190 1.21303 0.95557 0.98238 1.01174 1.17723 0.92848 0.91344 0.88527 1.19494 0.94431 0.90396 1.45151 0.90666 1.25884 0.95632 1.00139 0.92980 1.69809 1.13937 1.21808 1.38062 0.86169 0.81065 0.80386 0.78438 1.18666 1.20047 1.20056 1.20679 1.00257 0.95209 1.06160 1.20056 0.95133 0.98255 1.00195 0.88222 0.89355 0.89097 0.88029 0.88043 0.76356 0.77479 0.87328 0.85224 0.91221 0.88545 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.00 10.25 36.01 0.37 -0.63 16 2 C 0.35 3.08 7.33 -29.03 -0.21 2.87 16 3 O -0.46 -5.50 16.41 6.00 0.10 -5.40 16 4 C 0.09 0.93 6.08 -5.19 -0.03 0.90 16 5 N -0.75 -10.21 5.53 -66.42 -0.37 -10.58 16 6 C 0.70 12.84 8.39 -86.91 -0.73 12.11 16 7 O -0.57 -12.99 13.76 5.30 0.07 -12.92 16 8 N -0.67 -12.21 5.31 -14.10 -0.07 -12.29 16 9 C 0.02 0.55 6.31 -83.57 -0.53 0.02 16 10 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 11 C -0.14 -3.89 8.61 -39.26 -0.34 -4.23 16 12 C 0.10 2.67 5.55 -106.80 -0.59 2.08 16 13 C -0.46 -12.54 9.02 -37.86 -0.34 -12.88 16 14 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 15 C 0.07 1.78 5.42 -17.33 -0.09 1.69 16 16 N -0.81 -21.85 10.61 55.55 0.59 -21.26 16 17 Si 0.91 19.36 29.56 -169.99 -5.03 14.33 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.20 -4.99 9.74 -39.26 -0.38 -5.37 16 22 C -0.12 -2.59 9.90 -39.79 -0.39 -2.98 16 23 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.40 4.84 7.46 -40.82 -0.30 4.53 16 29 H 0.39 5.68 8.83 -40.82 -0.36 5.32 16 30 H 0.11 2.78 6.22 -52.49 -0.33 2.45 16 31 H 0.13 3.69 6.15 -52.49 -0.32 3.37 16 32 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 33 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -33.05 299.33 -7.63 -40.69 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -3.82 Total: 12.08 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.62 Total: -9.17 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.15 Total: -44.13 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.17 Total: -18.32 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.05 -7.63 -40.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711262886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.650 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds