Wall clock time and date at job start Mon Mar 30 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20761 * 120.00066 * 2 1 4 4 C 1.50703 * 119.99833 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.46874 * 179.97438 * 4 2 1 6 6 C 1.34779 * 120.00019 * 179.97438 * 5 4 2 7 7 O 1.21577 * 119.99878 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00290 * 179.97438 * 6 5 4 9 9 C 1.39237 * 120.00137 * 184.29366 * 8 6 5 10 10 C 1.39482 * 119.83071 * 324.70804 * 9 8 6 11 11 C 1.36376 * 120.16549 * 180.30043 * 10 9 8 12 12 C 1.40873 * 119.82940 * 359.47768 * 11 10 9 13 13 C 1.41148 * 120.16474 * 180.25788 * 12 11 10 14 14 H 1.08003 * 120.00334 * 215.00970 * 13 12 11 15 15 C 1.39898 * 120.00538 * 35.01179 * 13 12 11 16 16 N 1.30884 * 119.99369 * 355.54432 * 15 13 12 17 17 Si 1.86797 * 120.00494 * 175.54225 * 15 13 12 18 18 H 1.48506 * 109.47055 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47156 * 119.99899 * 17 15 13 20 20 H 1.48496 * 109.47126 * 239.99956 * 17 15 13 21 21 C 1.40866 * 119.66856 * 0.51413 * 12 11 10 22 22 C 1.36380 * 119.83103 * 359.74031 * 21 12 11 23 23 H 1.09000 * 109.46919 * 269.99974 * 1 2 3 24 24 H 1.08998 * 109.47083 * 29.99517 * 1 2 3 25 25 H 1.09000 * 109.47312 * 149.99915 * 1 2 3 26 26 H 1.08999 * 109.47452 * 59.99914 * 4 2 1 27 27 H 1.08996 * 109.47006 * 299.99247 * 4 2 1 28 28 H 0.96999 * 120.00625 * 0.02562 * 5 4 2 29 29 H 0.97004 * 119.99820 * 4.29754 * 8 6 5 30 30 H 1.07996 * 119.91977 * 0.02562 * 10 9 8 31 31 H 1.08000 * 120.08904 * 179.70241 * 11 10 9 32 32 H 0.97001 * 119.99708 * 179.97438 * 16 15 13 33 33 H 1.08000 * 120.08457 * 179.71252 * 21 12 11 34 34 H 1.07999 * 119.91469 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 7 3.7008 -1.0374 -0.0011 6 6 4.5767 -2.0618 -0.0011 7 8 4.1714 -3.2081 -0.0012 8 7 5.9017 -1.8156 -0.0021 9 6 6.8059 -2.8706 -0.0924 10 6 6.5155 -4.0879 0.5235 11 6 7.3989 -5.1239 0.4446 12 6 8.6022 -4.9657 -0.2706 13 6 9.5191 -6.0349 -0.3615 14 1 10.5807 -5.8367 -0.3705 15 6 9.0528 -7.3516 -0.4398 16 7 7.7714 -7.5989 -0.3412 17 14 10.2590 -8.7567 -0.6853 18 1 11.6397 -8.2155 -0.7653 19 1 10.1624 -9.6977 0.4594 20 1 9.9341 -9.4737 -1.9443 21 6 8.8883 -3.7333 -0.8901 22 6 7.9975 -2.7048 -0.7980 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5138 26 1 1.9972 -1.8764 -0.8908 27 1 1.9972 -1.8770 0.8892 28 1 4.0242 -0.1229 -0.0006 29 1 6.2256 -0.9033 0.0602 30 1 5.5907 -4.2090 1.0681 31 1 7.1749 -6.0643 0.9260 32 1 7.4480 -8.5118 -0.3959 33 1 9.8109 -3.6032 -1.4361 34 1 8.2156 -1.7592 -1.2721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711262886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:20 Heat of formation + Delta-G solvation = -64.299079 kcal Electronic energy + Delta-G solvation = -18524.899567 eV Core-core repulsion = 15421.916195 eV Total energy + Delta-G solvation = -3102.983372 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.56884 -40.45710 -39.14027 -36.24978 -35.51398 -34.62594 -31.88168 -31.37835 -30.70618 -28.10618 -26.36781 -23.30536 -22.85154 -21.66433 -20.97610 -19.40914 -19.19088 -18.39449 -17.14237 -16.96018 -16.69954 -16.41073 -16.01498 -15.73302 -15.50153 -14.92337 -14.54949 -14.40975 -13.98468 -13.89552 -13.54659 -13.30434 -13.08151 -12.98119 -12.84888 -12.62095 -12.30768 -11.79482 -11.67017 -11.35178 -10.94574 -10.84792 -10.55472 -10.21537 -9.42441 -8.69625 -8.46926 -6.29766 0.85247 0.87316 1.15790 1.40481 1.47332 1.56413 1.66655 2.15986 2.26230 2.84746 2.98675 3.34932 3.72079 4.09958 4.35334 4.43978 4.45963 4.51199 4.65710 4.72040 5.00391 5.12786 5.16711 5.18079 5.35257 5.36316 5.44893 5.70658 5.79646 6.10188 6.15636 6.18150 6.38223 6.39896 6.74089 6.99249 7.05426 7.07638 7.60493 8.46468 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047600 B = 0.003616 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.089761 B = 7741.319857 C = 8220.959550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.364 3.636 3 O -0.493 6.493 4 C 0.077 3.923 5 N -0.733 5.733 6 C 0.694 3.306 7 O -0.619 6.619 8 N -0.659 5.659 9 C 0.038 3.962 10 C -0.108 4.108 11 C -0.166 4.166 12 C 0.064 3.936 13 C -0.496 4.496 14 H 0.079 0.921 15 C 0.022 3.978 16 N -0.847 5.847 17 Si 0.991 3.009 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.270 1.270 21 C -0.209 4.209 22 C -0.110 4.110 23 H 0.118 0.882 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.411 0.589 29 H 0.414 0.586 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.282 0.718 33 H 0.113 0.887 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 12.318 0.393 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.242 3.758 3 O -0.369 6.369 4 C -0.048 4.048 5 N -0.392 5.392 6 C 0.395 3.605 7 O -0.499 6.499 8 N -0.307 5.307 9 C -0.056 4.056 10 C -0.128 4.128 11 C -0.186 4.186 12 C 0.062 3.938 13 C -0.527 4.527 14 H 0.097 0.903 15 C -0.189 4.189 16 N -0.475 5.475 17 Si 0.812 3.188 18 H -0.178 1.178 19 H -0.193 1.193 20 H -0.195 1.195 21 C -0.228 4.228 22 C -0.130 4.130 23 H 0.136 0.864 24 H 0.112 0.888 25 H 0.129 0.871 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.248 0.752 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.664 11.695 0.382 16.522 hybrid contribution 0.605 -0.180 -0.047 0.633 sum -11.060 11.515 0.334 15.969 Atomic orbital electron populations 1.22244 0.89587 1.06524 1.06570 1.25139 0.94133 0.88187 0.68313 1.90410 1.72851 1.35666 1.38021 1.21872 0.79006 0.98163 1.05762 1.44744 1.05643 1.08517 1.80319 1.16112 0.81567 0.84741 0.78108 1.90918 1.78646 1.21558 1.58795 1.41872 1.03072 1.09393 1.76352 1.17141 0.92576 0.89162 1.06714 1.20679 0.98373 0.93721 1.00028 1.21168 0.96816 0.98057 1.02546 1.18061 0.93203 0.92921 0.89627 1.19772 0.94636 0.91465 1.46858 0.90325 1.26839 0.97425 1.02595 0.92072 1.69924 1.15911 1.22647 1.39048 0.85023 0.78626 0.76637 0.78513 1.17820 1.19268 1.19482 1.20947 1.01334 0.94800 1.05758 1.20403 0.93977 0.99410 0.99194 0.86404 0.88839 0.87115 0.87490 0.87303 0.75153 0.74893 0.88289 0.87682 0.90790 0.86914 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 10.25 71.24 0.73 -0.59 16 2 C 0.36 5.58 7.33 29.10 0.21 5.80 16 3 O -0.49 -10.96 16.41 -1.45 -0.02 -10.98 16 4 C 0.08 1.48 6.08 85.63 0.52 2.00 16 5 N -0.73 -18.74 5.53 -482.30 -2.67 -21.41 16 6 C 0.69 24.89 8.39 179.05 1.50 26.39 16 7 O -0.62 -28.10 13.76 -3.96 -0.05 -28.15 16 8 N -0.66 -23.01 5.31 -316.79 -1.68 -24.70 16 9 C 0.04 1.70 6.31 38.56 0.24 1.94 16 10 C -0.11 -5.62 8.61 22.14 0.19 -5.43 16 11 C -0.17 -9.44 8.61 22.48 0.19 -9.24 16 12 C 0.06 3.59 5.55 -21.28 -0.12 3.47 16 13 C -0.50 -27.53 9.02 23.39 0.21 -27.32 16 14 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 15 C 0.02 1.15 5.42 85.24 0.46 1.62 16 16 N -0.85 -47.53 10.61 21.82 0.23 -47.29 16 17 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 18 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 19 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.21 -10.12 9.74 22.48 0.22 -9.90 16 22 C -0.11 -4.67 9.90 22.13 0.22 -4.45 16 23 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.11 0.36 8.12 -2.39 -0.02 0.35 16 26 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.41 9.06 7.46 -92.71 -0.69 8.37 16 29 H 0.41 10.82 8.83 -92.71 -0.82 10.00 16 30 H 0.10 5.28 6.22 -2.91 -0.02 5.26 16 31 H 0.11 6.39 6.15 -2.91 -0.02 6.37 16 32 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 33 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 34 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -74.28 299.33 2.06 -72.22 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.36 Total: 33.84 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 4.59 Total: -15.72 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -4.12 Total: -93.40 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.08 Total: -39.13 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -74.28 2.06 -72.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711262886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.920 kcal (2) G-P(sol) polarization free energy of solvation -74.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds