Wall clock time and date at job start Mon Mar 30 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 H 1.08995 * 115.56151 * 29.31450 * 3 2 1 5 5 C 1.53006 * 117.49682 * 243.62616 * 3 2 1 6 6 C 1.52999 * 117.49984 * 175.00342 * 3 2 1 7 7 H 1.09002 * 117.49803 * 214.97824 * 6 3 2 8 8 N 1.46494 * 117.51777 * 0.02562 * 6 3 2 9 9 S 1.65602 * 120.00069 * 214.88371 * 8 6 3 10 10 O 1.42106 * 106.40095 * 178.54338 * 9 8 6 11 11 O 1.42092 * 106.40244 * 311.45863 * 9 8 6 12 12 N 1.65595 * 107.21823 * 65.00299 * 9 8 6 13 13 C 1.46504 * 119.99682 * 269.99846 * 12 9 8 14 14 C 1.46494 * 120.00244 * 90.00121 * 12 9 8 15 15 C 1.50701 * 109.47623 * 95.00037 * 14 12 9 16 16 H 1.08009 * 119.99175 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00411 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99838 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47402 * 89.99921 * 19 17 15 21 21 H 1.48500 * 109.46988 * 210.00034 * 19 17 15 22 22 H 1.48498 * 109.46831 * 329.99650 * 19 17 15 23 23 H 1.08999 * 109.47342 * 59.99615 * 1 2 3 24 24 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46898 * 300.00037 * 1 2 3 26 26 H 1.08998 * 109.46898 * 239.99963 * 2 1 3 27 27 H 1.08999 * 109.47342 * 120.00385 * 2 1 3 28 28 H 1.09004 * 117.49624 * 145.02427 * 5 3 2 29 29 H 1.08992 * 117.49824 * 359.97438 * 5 3 2 30 30 H 0.97009 * 120.00469 * 34.88413 * 8 6 3 31 31 H 1.09000 * 109.47118 * 90.00210 * 13 12 9 32 32 H 1.09002 * 109.47161 * 209.99976 * 13 12 9 33 33 H 1.08994 * 109.47015 * 330.00020 * 13 12 9 34 34 H 1.09007 * 109.47290 * 214.99673 * 14 12 9 35 35 H 1.08997 * 109.47262 * 334.99528 * 14 12 9 36 36 H 0.97004 * 120.00135 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9075 -1.2160 6 6 3.5502 1.6578 0.1182 7 1 3.8921 2.5288 0.6774 8 7 4.3975 0.4674 0.2222 9 16 5.7640 0.5027 1.1570 10 8 6.3377 -0.7951 1.0783 11 8 6.4652 1.6853 0.7982 12 7 5.2786 0.7050 2.7272 13 6 5.1286 2.0536 3.2796 14 6 4.9991 -0.4645 3.5640 15 6 6.2263 -0.8130 4.3664 16 1 7.1247 -0.2225 4.2629 17 6 6.2021 -1.8855 5.2324 18 7 7.2732 -2.1899 5.9322 19 14 4.6485 -2.9072 5.4108 20 1 4.6720 -4.0198 4.4276 21 1 4.5769 -3.4632 6.7860 22 1 3.4615 -2.0506 5.1608 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.7213 2.9427 -1.5344 29 1 3.0098 1.1857 -2.0156 30 1 4.1583 -0.3417 -0.2566 31 1 4.1103 2.4040 3.1112 32 1 5.3333 2.0327 4.3500 33 1 5.8306 2.7274 2.7885 34 1 4.1748 -0.2387 4.2406 35 1 4.7278 -1.3085 2.9299 36 1 7.2562 -2.9442 6.5418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713356097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:16 Heat of formation + Delta-G solvation = -56.648567 kcal Electronic energy + Delta-G solvation = -18750.164084 eV Core-core repulsion = 15782.956414 eV Total energy + Delta-G solvation = -2967.207670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.51950 -36.65481 -35.63534 -35.23308 -33.09623 -32.38507 -31.15725 -28.39959 -25.17949 -24.06911 -22.23082 -21.88999 -20.43291 -19.03288 -17.42278 -16.94803 -16.62661 -16.16984 -15.23526 -15.08242 -14.29294 -14.22640 -13.74161 -13.35097 -13.15130 -12.69312 -12.53646 -12.39764 -12.19724 -11.82739 -11.71895 -11.57867 -11.44151 -11.34811 -11.33428 -11.23276 -11.12497 -10.67892 -10.45438 -10.25568 -9.99783 -9.55694 -8.92356 -8.59820 -8.13079 -6.08503 -4.07896 1.11655 3.26128 3.31537 3.32427 3.38900 3.71142 4.07639 4.37808 4.51570 4.64122 4.79781 4.97900 5.06365 5.14596 5.22681 5.25190 5.38327 5.56365 5.58328 5.70616 5.88742 5.91006 5.93341 6.02892 6.12070 6.21601 6.28943 6.44745 6.71314 6.97624 7.12211 7.40709 7.57693 8.48611 8.96360 9.50437 11.05097 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.007381 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.117052 B = 3792.461092 C = 4610.432754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.161 4.161 4 H 0.110 0.890 5 C -0.187 4.187 6 C 0.097 3.903 7 H 0.133 0.867 8 N -1.103 6.103 9 S 2.784 3.216 10 O -0.961 6.961 11 O -0.991 6.991 12 N -0.988 5.988 13 C 0.093 3.907 14 C 0.229 3.771 15 C -0.532 4.532 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.872 3.128 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.265 1.265 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.412 0.588 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.028 0.972 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 7.626 -11.514 19.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C -0.182 4.182 4 H 0.128 0.872 5 C -0.226 4.226 6 C -0.013 4.013 7 H 0.151 0.849 8 N -0.858 5.858 9 S 2.792 3.208 10 O -0.944 6.944 11 O -0.974 6.974 12 N -0.830 5.830 13 C -0.054 4.054 14 C 0.105 3.895 15 C -0.572 4.572 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.699 3.301 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.189 1.189 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.245 0.755 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.634 7.573 -11.562 18.725 hybrid contribution -1.240 -0.963 0.152 1.577 sum -13.874 6.610 -11.410 19.141 Atomic orbital electron populations 1.21727 0.95494 1.01546 1.01681 1.21065 0.95864 0.94155 1.02371 1.22891 0.94261 0.98612 1.02388 0.87214 1.23513 1.04281 1.02662 0.92156 1.21314 0.89537 0.89352 1.01055 0.84941 1.55902 1.45202 1.19725 1.64982 1.01933 0.72978 0.73299 0.72639 1.93658 1.74436 1.40097 1.86254 1.93540 1.70397 1.50430 1.83058 1.57343 1.84983 1.12660 1.28050 1.21413 0.99625 0.82459 1.01888 1.19417 0.97651 0.81876 0.90534 1.21392 0.98548 1.14392 1.22827 0.90417 1.24871 0.96148 0.96766 0.95204 1.69897 1.28253 1.28560 1.26613 0.86917 0.84042 0.81300 0.77840 1.19831 1.20962 1.18933 0.92845 0.92791 0.92653 0.91981 0.91009 0.88200 0.88504 0.75497 0.94165 0.90092 0.91264 0.94877 0.95379 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.87 37.16 0.37 -0.88 16 2 C -0.10 -0.96 5.28 -26.73 -0.14 -1.10 16 3 C -0.16 -1.56 5.74 -90.62 -0.52 -2.08 16 4 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 5 C -0.19 -1.76 10.10 -26.73 -0.27 -2.03 16 6 C 0.10 1.13 6.47 -67.93 -0.44 0.69 16 7 H 0.13 1.48 8.10 -51.93 -0.42 1.06 16 8 N -1.10 -15.53 5.74 -4.89 -0.03 -15.56 16 9 S 2.78 53.44 6.08 -107.50 -0.65 52.78 16 10 O -0.96 -22.49 17.11 -57.17 -0.98 -23.47 16 11 O -0.99 -20.31 16.49 -57.17 -0.94 -21.25 16 12 N -0.99 -19.61 3.23 -123.05 -0.40 -20.01 16 13 C 0.09 1.51 10.68 59.85 0.64 2.15 16 14 C 0.23 5.33 4.15 -5.20 -0.02 5.30 16 15 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 16 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -27.57 13.96 55.43 0.77 -26.79 16 19 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.58 7.81 -51.93 -0.41 0.17 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 0.88 8.03 -51.93 -0.42 0.47 16 30 H 0.41 5.12 8.28 -34.47 -0.29 4.84 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 34 H 0.03 0.73 7.17 -51.92 -0.37 0.36 16 35 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -34.55 313.31 -8.59 -43.15 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.60 Total: 1.52 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.83 Total: -11.44 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: 0.35 Total: -62.36 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.92 Total: -44.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 53.44 SS G_CDS: -0.65 Total: 52.78 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.55 -8.59 -43.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713356097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.501 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds