Wall clock time and date at job start Mon Mar 30 2020 04:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47329 * 2 1 4 4 H 1.08995 * 115.56151 * 29.31450 * 3 2 1 5 5 C 1.53006 * 117.49682 * 243.62616 * 3 2 1 6 6 C 1.52999 * 117.49984 * 175.00342 * 3 2 1 7 7 H 1.09002 * 117.49803 * 214.97824 * 6 3 2 8 8 N 1.46494 * 117.51777 * 0.02562 * 6 3 2 9 9 S 1.65602 * 120.00069 * 214.88371 * 8 6 3 10 10 O 1.42106 * 106.40095 * 178.54338 * 9 8 6 11 11 O 1.42092 * 106.40244 * 311.45863 * 9 8 6 12 12 N 1.65595 * 107.21823 * 65.00299 * 9 8 6 13 13 C 1.46504 * 119.99682 * 269.99846 * 12 9 8 14 14 C 1.46494 * 120.00244 * 90.00121 * 12 9 8 15 15 C 1.50701 * 109.47623 * 95.00037 * 14 12 9 16 16 H 1.08009 * 119.99175 * 359.97438 * 15 14 12 17 17 C 1.37873 * 120.00411 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99838 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47402 * 89.99921 * 19 17 15 21 21 H 1.48500 * 109.46988 * 210.00034 * 19 17 15 22 22 H 1.48498 * 109.46831 * 329.99650 * 19 17 15 23 23 H 1.08999 * 109.47342 * 59.99615 * 1 2 3 24 24 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46898 * 300.00037 * 1 2 3 26 26 H 1.08998 * 109.46898 * 239.99963 * 2 1 3 27 27 H 1.08999 * 109.47342 * 120.00385 * 2 1 3 28 28 H 1.09004 * 117.49624 * 145.02427 * 5 3 2 29 29 H 1.08992 * 117.49824 * 359.97438 * 5 3 2 30 30 H 0.97009 * 120.00469 * 34.88413 * 8 6 3 31 31 H 1.09000 * 109.47118 * 90.00210 * 13 12 9 32 32 H 1.09002 * 109.47161 * 209.99976 * 13 12 9 33 33 H 1.08994 * 109.47015 * 330.00020 * 13 12 9 34 34 H 1.09007 * 109.47290 * 214.99673 * 14 12 9 35 35 H 1.08997 * 109.47262 * 334.99528 * 14 12 9 36 36 H 0.97004 * 120.00135 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8440 1.9075 -1.2160 6 6 3.5502 1.6578 0.1182 7 1 3.8921 2.5288 0.6774 8 7 4.3975 0.4674 0.2222 9 16 5.7640 0.5027 1.1570 10 8 6.3377 -0.7951 1.0783 11 8 6.4652 1.6853 0.7982 12 7 5.2786 0.7050 2.7272 13 6 5.1286 2.0536 3.2796 14 6 4.9991 -0.4645 3.5640 15 6 6.2263 -0.8130 4.3664 16 1 7.1247 -0.2225 4.2629 17 6 6.2021 -1.8855 5.2324 18 7 7.2732 -2.1899 5.9322 19 14 4.6485 -2.9072 5.4108 20 1 4.6720 -4.0198 4.4276 21 1 4.5769 -3.4632 6.7860 22 1 3.4615 -2.0506 5.1608 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.7213 2.9427 -1.5344 29 1 3.0098 1.1857 -2.0156 30 1 4.1583 -0.3417 -0.2566 31 1 4.1103 2.4040 3.1112 32 1 5.3333 2.0327 4.3500 33 1 5.8306 2.7274 2.7885 34 1 4.1748 -0.2387 4.2406 35 1 4.7278 -1.3085 2.9299 36 1 7.2562 -2.9442 6.5418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713356097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:16 Heat of formation + Delta-G solvation = -83.223256 kcal Electronic energy + Delta-G solvation = -18751.316449 eV Core-core repulsion = 15782.956414 eV Total energy + Delta-G solvation = -2968.360035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.36826 -38.29149 -37.28620 -36.88958 -34.50933 -34.02582 -32.02822 -30.27430 -26.79462 -24.75678 -23.84232 -23.05796 -21.31054 -20.33450 -19.19087 -18.71519 -18.25029 -17.41419 -16.66290 -16.07736 -16.02708 -15.34679 -15.01509 -14.64343 -14.50527 -14.27237 -14.00388 -13.50190 -13.39232 -13.20838 -13.15264 -13.11775 -12.99100 -12.86479 -12.45232 -12.35094 -12.20300 -12.13163 -11.95784 -11.80771 -11.70626 -10.80096 -10.78127 -9.90011 -9.75544 -8.29058 -6.35058 -0.38393 1.36727 1.40814 1.49282 1.98754 2.35448 2.60137 2.94417 3.04883 3.40819 3.75270 3.95418 3.97964 4.05220 4.19886 4.38189 4.56688 4.67143 4.67912 4.73312 4.88355 4.90095 5.02051 5.05570 5.22856 5.26313 5.29689 5.33748 5.38410 5.48356 5.54451 5.70671 6.07309 6.31153 6.68129 7.27991 8.88625 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.007381 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.117052 B = 3792.461092 C = 4610.432754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.147 4.147 4 H 0.127 0.873 5 C -0.172 4.172 6 C 0.062 3.938 7 H 0.138 0.862 8 N -1.087 6.087 9 S 2.801 3.199 10 O -1.011 7.011 11 O -1.009 7.009 12 N -0.997 5.997 13 C 0.085 3.915 14 C 0.237 3.763 15 C -0.545 4.545 16 H 0.027 0.973 17 C 0.006 3.994 18 N -0.949 5.949 19 Si 0.945 3.055 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.227 1.227 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.421 0.579 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.215 8.258 -12.595 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.168 4.168 4 H 0.145 0.855 5 C -0.212 4.212 6 C -0.046 4.046 7 H 0.155 0.845 8 N -0.847 5.847 9 S 2.809 3.191 10 O -0.995 6.995 11 O -0.992 6.992 12 N -0.838 5.838 13 C -0.060 4.060 14 C 0.112 3.888 15 C -0.584 4.584 16 H 0.045 0.955 17 C -0.192 4.192 18 N -0.589 5.589 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.150 1.150 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.118 0.882 30 H 0.256 0.744 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.168 8.247 -12.659 22.128 hybrid contribution -0.084 -1.056 0.412 1.137 sum -16.252 7.192 -12.246 21.583 Atomic orbital electron populations 1.21701 0.94339 1.01840 1.02271 1.21119 0.96922 0.94192 1.01803 1.22967 0.92711 0.98914 1.02176 0.85497 1.23627 1.02204 1.03958 0.91377 1.21671 0.90590 0.88533 1.03810 0.84479 1.55322 1.44355 1.21243 1.63733 1.01129 0.73465 0.71817 0.72697 1.93584 1.76480 1.42472 1.86976 1.93509 1.71614 1.50765 1.83286 1.57270 1.85273 1.13059 1.28196 1.21647 1.02414 0.80888 1.01022 1.19184 0.95600 0.83364 0.90673 1.21740 0.98987 1.13942 1.23720 0.95480 1.25958 1.00326 0.98272 0.94649 1.70076 1.31290 1.29665 1.27917 0.85771 0.80148 0.79532 0.77926 1.19514 1.20463 1.14953 0.91893 0.92731 0.92407 0.91715 0.92532 0.86255 0.88186 0.74392 0.89736 0.91294 0.91045 0.92524 0.94866 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.87 71.98 0.71 -1.27 16 2 C -0.10 -1.72 5.28 30.59 0.16 -1.55 16 3 C -0.15 -2.31 5.74 -10.79 -0.06 -2.38 16 4 H 0.13 1.60 8.07 -2.39 -0.02 1.58 16 5 C -0.17 -2.62 10.10 30.60 0.31 -2.31 16 6 C 0.06 1.27 6.47 44.99 0.29 1.56 16 7 H 0.14 2.67 8.10 -2.39 -0.02 2.65 16 8 N -1.09 -28.79 5.74 -169.39 -0.97 -29.76 16 9 S 2.80 106.95 6.08 -56.49 -0.34 106.61 16 10 O -1.01 -48.34 17.11 -128.00 -2.19 -50.53 16 11 O -1.01 -41.20 16.49 -128.00 -2.11 -43.31 16 12 N -1.00 -38.86 3.23 -543.23 -1.75 -40.61 16 13 C 0.09 2.67 10.68 127.77 1.36 4.04 16 14 C 0.24 10.78 4.15 85.63 0.36 11.14 16 15 C -0.54 -31.82 9.94 25.60 0.25 -31.57 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.33 5.47 84.65 0.46 0.79 16 18 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 19 Si 0.94 42.70 27.47 68.60 1.88 44.58 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.23 -8.82 6.54 99.48 0.65 -8.17 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.03 7.81 -2.39 -0.02 1.01 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.10 1.49 8.03 -2.39 -0.02 1.47 16 30 H 0.42 9.80 8.28 -96.74 -0.80 9.00 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 33 H 0.07 2.18 7.02 -2.39 -0.02 2.16 16 34 H 0.06 2.33 7.17 -2.38 -0.02 2.32 16 35 H 0.03 1.49 7.04 -2.39 -0.02 1.48 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -77.45 313.31 -1.13 -78.58 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.21 Total: 16.17 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 3.85 Total: -21.56 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -2.42 Total: -130.55 kcal Atomic # 8 Polarization: -89.54 SS G_CDS: -4.30 Total: -93.84 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 106.95 SS G_CDS: -0.34 Total: 106.61 kcal Total: -77.45 -1.13 -78.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713356097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.644 kcal (2) G-P(sol) polarization free energy of solvation -77.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds