Wall clock time and date at job start Mon Mar 30 2020 04:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08997 * 115.55235 * 330.71397 * 3 2 1 5 5 C 1.52998 * 117.50017 * 116.39559 * 3 2 1 6 6 C 1.53000 * 60.00266 * 107.48668 * 5 3 2 7 7 H 1.09000 * 117.49883 * 107.49013 * 6 5 3 8 8 N 1.46501 * 117.49527 * 252.50933 * 6 5 3 9 9 S 1.65598 * 120.00144 * 213.62009 * 8 6 5 10 10 O 1.42092 * 106.40643 * 178.54146 * 9 8 6 11 11 O 1.42101 * 106.40208 * 311.46522 * 9 8 6 12 12 N 1.65605 * 107.21457 * 64.99985 * 9 8 6 13 13 C 1.46501 * 119.99790 * 90.00504 * 12 9 8 14 14 C 1.46500 * 120.00294 * 270.00107 * 12 9 8 15 15 C 1.50697 * 109.46968 * 95.00285 * 14 12 9 16 16 H 1.08001 * 120.00190 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99921 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00043 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47091 * 89.99660 * 19 17 15 21 21 H 1.48497 * 109.47191 * 209.99715 * 19 17 15 22 22 H 1.48497 * 109.47315 * 329.99936 * 19 17 15 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 1.08997 * 117.49816 * 214.97686 * 5 3 2 29 29 H 1.08997 * 117.49812 * 359.97438 * 5 3 2 30 30 H 0.97000 * 119.99843 * 33.62386 * 8 6 5 31 31 H 1.09000 * 109.47510 * 89.99329 * 13 12 9 32 32 H 1.09000 * 109.47349 * 210.00198 * 13 12 9 33 33 H 1.08999 * 109.46887 * 329.99774 * 13 12 9 34 34 H 1.08997 * 109.46889 * 215.00063 * 14 12 9 35 35 H 1.09000 * 109.47070 * 334.99997 * 14 12 9 36 36 H 0.96994 * 119.99513 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 -0.4810 5 6 2.8443 1.9075 1.2156 6 6 3.5501 1.6579 -0.1187 7 1 3.8919 2.5288 -0.6779 8 7 4.3971 0.4671 -0.2235 9 16 5.7616 0.5014 -1.1611 10 8 6.3722 -0.7747 -1.0281 11 8 5.3746 1.0511 -2.4130 12 7 6.8016 1.5913 -0.4733 13 6 7.7680 1.1466 0.5339 14 6 6.7552 3.0003 -0.8720 15 6 5.8858 3.7666 0.0912 16 1 5.4146 3.2552 0.9176 17 6 5.6912 5.1204 -0.0830 18 7 6.2646 5.7430 -1.0896 19 14 4.6130 6.0701 1.1106 20 1 5.4454 6.5855 2.2272 21 1 3.9746 7.2087 0.4027 22 1 3.5617 5.1712 1.6511 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7217 2.9426 1.5342 29 1 3.0097 1.1858 2.0156 30 1 4.1585 -0.3415 0.2563 31 1 8.6942 0.8489 0.0423 32 1 7.9708 1.9621 1.2280 33 1 7.3580 0.2975 1.0808 34 1 7.7633 3.4145 -0.8602 35 1 6.3415 3.0799 -1.8773 36 1 6.1279 6.6955 -1.2118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713356102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:20 Heat of formation + Delta-G solvation = -64.431638 kcal Electronic energy + Delta-G solvation = -19082.416491 eV Core-core repulsion = 16114.871322 eV Total energy + Delta-G solvation = -2967.545169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.09625 -36.59881 -35.48178 -35.19304 -32.84891 -32.50791 -30.84189 -27.81482 -25.08000 -23.80857 -22.30092 -21.69739 -20.11744 -18.78517 -17.32620 -16.70954 -16.42937 -15.70942 -15.12858 -14.77637 -14.45058 -14.01808 -13.51629 -13.24475 -12.96102 -12.51001 -12.21718 -12.17972 -11.85133 -11.70303 -11.65508 -11.39979 -11.23805 -11.18394 -11.15166 -11.08935 -10.87471 -10.66627 -10.52415 -10.08633 -9.78032 -9.55519 -8.54349 -8.49895 -8.05117 -6.14640 -4.21247 1.30169 3.21494 3.28754 3.30334 3.52361 4.12817 4.26804 4.32288 4.89939 4.99279 5.18511 5.18898 5.26034 5.41917 5.51633 5.55660 5.67805 5.75436 5.88630 6.01829 6.08905 6.16171 6.23378 6.27657 6.28276 6.53950 6.56148 6.82482 7.26913 7.35796 7.45907 7.64999 7.83432 8.12272 8.85383 9.44499 10.93168 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.010415 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.186056 B = 2687.694013 C = 4072.815843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.173 4.173 4 H 0.107 0.893 5 C -0.185 4.185 6 C 0.111 3.889 7 H 0.158 0.842 8 N -1.098 6.098 9 S 2.791 3.209 10 O -1.002 7.002 11 O -0.977 6.977 12 N -0.996 5.996 13 C 0.108 3.892 14 C 0.241 3.759 15 C -0.543 4.543 16 H 0.069 0.931 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.269 1.269 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.405 0.595 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 -8.506 4.578 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.194 4.194 4 H 0.125 0.875 5 C -0.224 4.224 6 C 0.002 3.998 7 H 0.176 0.824 8 N -0.852 5.852 9 S 2.798 3.202 10 O -0.987 6.987 11 O -0.960 6.960 12 N -0.838 5.838 13 C -0.039 4.039 14 C 0.119 3.881 15 C -0.582 4.582 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.194 1.194 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.237 0.763 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.950 -8.666 3.565 11.100 hybrid contribution -0.734 0.652 1.415 1.722 sum -6.684 -8.014 4.980 11.563 Atomic orbital electron populations 1.21737 0.95815 1.01086 1.01820 1.21019 0.95561 0.94703 1.01681 1.22899 0.95259 0.97868 1.03372 0.87469 1.23451 1.04446 1.02560 0.91984 1.21687 0.88143 0.89273 1.00646 0.82448 1.55596 1.42292 1.19707 1.67649 1.01611 0.72494 0.72221 0.73852 1.93545 1.76016 1.41604 1.87506 1.93585 1.82596 1.79599 1.40218 1.57581 1.48054 1.23209 1.54982 1.21196 0.91807 0.99344 0.91524 1.19262 0.98713 0.73595 0.96571 1.21660 1.30435 0.93507 1.12633 0.91238 1.24966 0.95914 0.97609 0.95363 1.69940 1.43235 1.10171 1.29225 0.86634 0.80749 0.79788 0.81015 1.20718 1.21203 1.19386 0.92687 0.93135 0.92799 0.91627 0.92253 0.88187 0.89144 0.76320 0.93810 0.90833 0.92939 0.94430 0.93027 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.87 37.16 0.37 -1.16 16 2 C -0.09 -1.12 5.28 -26.73 -0.14 -1.26 16 3 C -0.17 -2.49 5.74 -90.62 -0.52 -3.01 16 4 H 0.11 1.50 8.07 -51.93 -0.42 1.08 16 5 C -0.19 -2.80 10.10 -26.73 -0.27 -3.07 16 6 C 0.11 1.91 5.30 -67.93 -0.36 1.55 16 7 H 0.16 3.21 6.44 -51.93 -0.33 2.88 16 8 N -1.10 -18.04 5.74 -4.89 -0.03 -18.07 16 9 S 2.79 54.85 6.08 -107.50 -0.65 54.19 16 10 O -1.00 -20.43 17.21 -57.17 -0.98 -21.41 16 11 O -0.98 -22.53 16.45 -57.17 -0.94 -23.47 16 12 N -1.00 -20.25 3.23 -123.06 -0.40 -20.65 16 13 C 0.11 1.84 10.31 59.85 0.62 2.46 16 14 C 0.24 5.81 5.41 -5.19 -0.03 5.79 16 15 C -0.54 -13.45 7.36 -34.44 -0.25 -13.71 16 16 H 0.07 1.64 7.05 -52.49 -0.37 1.27 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 19 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -5.66 7.05 56.52 0.40 -5.27 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 28 H 0.10 1.61 8.08 -51.93 -0.42 1.19 16 29 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.40 5.53 8.28 -34.47 -0.29 5.25 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 34 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -29.98 311.29 -8.79 -38.77 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.51 Total: 5.88 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.69 Total: -10.83 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.31 Total: -62.64 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -1.92 Total: -44.88 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 54.85 SS G_CDS: -0.65 Total: 54.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.98 -8.79 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713356102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.661 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds