Wall clock time and date at job start Mon Mar 30 2020 04:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08997 * 115.55235 * 330.71397 * 3 2 1 5 5 C 1.52998 * 117.50017 * 116.39559 * 3 2 1 6 6 C 1.53000 * 60.00266 * 107.48668 * 5 3 2 7 7 H 1.09000 * 117.49883 * 107.49013 * 6 5 3 8 8 N 1.46501 * 117.49527 * 252.50933 * 6 5 3 9 9 S 1.65598 * 120.00144 * 213.62009 * 8 6 5 10 10 O 1.42092 * 106.40643 * 178.54146 * 9 8 6 11 11 O 1.42101 * 106.40208 * 311.46522 * 9 8 6 12 12 N 1.65605 * 107.21457 * 64.99985 * 9 8 6 13 13 C 1.46501 * 119.99790 * 90.00504 * 12 9 8 14 14 C 1.46500 * 120.00294 * 270.00107 * 12 9 8 15 15 C 1.50697 * 109.46968 * 95.00285 * 14 12 9 16 16 H 1.08001 * 120.00190 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99921 * 180.02562 * 15 14 12 18 18 N 1.31522 * 120.00043 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47091 * 89.99660 * 19 17 15 21 21 H 1.48497 * 109.47191 * 209.99715 * 19 17 15 22 22 H 1.48497 * 109.47315 * 329.99936 * 19 17 15 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 28 28 H 1.08997 * 117.49816 * 214.97686 * 5 3 2 29 29 H 1.08997 * 117.49812 * 359.97438 * 5 3 2 30 30 H 0.97000 * 119.99843 * 33.62386 * 8 6 5 31 31 H 1.09000 * 109.47510 * 89.99329 * 13 12 9 32 32 H 1.09000 * 109.47349 * 210.00198 * 13 12 9 33 33 H 1.08999 * 109.46887 * 329.99774 * 13 12 9 34 34 H 1.08997 * 109.46889 * 215.00063 * 14 12 9 35 35 H 1.09000 * 109.47070 * 334.99997 * 14 12 9 36 36 H 0.96994 * 119.99513 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1716 -0.4810 5 6 2.8443 1.9075 1.2156 6 6 3.5501 1.6579 -0.1187 7 1 3.8919 2.5288 -0.6779 8 7 4.3971 0.4671 -0.2235 9 16 5.7616 0.5014 -1.1611 10 8 6.3722 -0.7747 -1.0281 11 8 5.3746 1.0511 -2.4130 12 7 6.8016 1.5913 -0.4733 13 6 7.7680 1.1466 0.5339 14 6 6.7552 3.0003 -0.8720 15 6 5.8858 3.7666 0.0912 16 1 5.4146 3.2552 0.9176 17 6 5.6912 5.1204 -0.0830 18 7 6.2646 5.7430 -1.0896 19 14 4.6130 6.0701 1.1106 20 1 5.4454 6.5855 2.2272 21 1 3.9746 7.2087 0.4027 22 1 3.5617 5.1712 1.6511 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.7217 2.9426 1.5342 29 1 3.0097 1.1858 2.0156 30 1 4.1585 -0.3415 0.2563 31 1 8.6942 0.8489 0.0423 32 1 7.9708 1.9621 1.2280 33 1 7.3580 0.2975 1.0808 34 1 7.7633 3.4145 -0.8602 35 1 6.3415 3.0799 -1.8773 36 1 6.1279 6.6955 -1.2118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713356102.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:19 Heat of formation + Delta-G solvation = -85.677691 kcal Electronic energy + Delta-G solvation = -19083.337789 eV Core-core repulsion = 16114.871322 eV Total energy + Delta-G solvation = -2968.466467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.32825 -38.26267 -37.18709 -36.88965 -34.44653 -33.98609 -31.98915 -29.63649 -26.74419 -24.77852 -24.14226 -22.99516 -21.30424 -20.27869 -18.94557 -18.46559 -18.16777 -17.22572 -16.70274 -16.13243 -16.00543 -15.16148 -15.04353 -14.84367 -14.16150 -13.97297 -13.92107 -13.44097 -13.37556 -13.23783 -13.05827 -13.02898 -12.92772 -12.75345 -12.47226 -12.38371 -12.29904 -12.11259 -11.88733 -11.74129 -11.64221 -10.76021 -10.53579 -9.81628 -9.73600 -8.13044 -6.25620 -0.28560 1.45953 1.47160 1.56824 1.98969 2.45520 2.62037 3.00378 3.19353 3.45585 3.81838 4.00765 4.11043 4.13547 4.32449 4.38059 4.56814 4.70851 4.72895 4.85118 4.90591 5.02546 5.08191 5.19515 5.29123 5.30770 5.32974 5.43542 5.52701 5.55238 5.77776 5.88863 6.14161 6.23112 6.87693 7.43927 8.95296 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.010415 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.186056 B = 2687.694013 C = 4072.815843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.156 4.156 4 H 0.109 0.891 5 C -0.172 4.172 6 C 0.078 3.922 7 H 0.121 0.879 8 N -1.081 6.081 9 S 2.807 3.193 10 O -1.007 7.007 11 O -1.015 7.015 12 N -1.002 6.002 13 C 0.099 3.901 14 C 0.254 3.746 15 C -0.535 4.535 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.931 5.931 19 Si 0.951 3.049 20 H -0.279 1.279 21 H -0.293 1.293 22 H -0.246 1.246 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.421 0.579 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -9.756 6.739 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.177 4.177 4 H 0.127 0.873 5 C -0.211 4.211 6 C -0.030 4.030 7 H 0.139 0.861 8 N -0.839 5.839 9 S 2.815 3.185 10 O -0.991 6.991 11 O -0.999 6.999 12 N -0.843 5.843 13 C -0.046 4.046 14 C 0.130 3.870 15 C -0.574 4.574 16 H 0.101 0.899 17 C -0.188 4.188 18 N -0.571 5.571 19 Si 0.776 3.224 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.169 1.169 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.256 0.744 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.489 -9.961 5.751 13.726 hybrid contribution -0.240 0.973 0.722 1.235 sum -7.730 -8.988 6.473 13.507 Atomic orbital electron populations 1.21717 0.94320 1.02162 1.02017 1.21082 0.96884 0.92970 1.02158 1.23015 0.93061 0.99480 1.02117 0.87321 1.23492 1.03023 1.02803 0.91806 1.21511 0.90157 0.88623 1.02709 0.86087 1.55096 1.41057 1.20360 1.67425 1.00930 0.72673 0.71581 0.73326 1.93530 1.76517 1.41513 1.87572 1.93536 1.83264 1.80255 1.42850 1.57486 1.49432 1.21516 1.55888 1.21443 0.91817 1.00262 0.91115 1.18839 0.97279 0.75712 0.95155 1.21900 1.29557 0.93498 1.12407 0.89926 1.25794 0.97278 0.98801 0.96902 1.70082 1.45265 1.10359 1.31406 0.85657 0.79538 0.78432 0.78724 1.20498 1.21879 1.16943 0.92930 0.91670 0.92220 0.92176 0.90766 0.88961 0.86962 0.74358 0.92701 0.90687 0.90383 0.96337 0.96302 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.87 71.98 0.71 -1.85 16 2 C -0.09 -1.99 5.28 30.59 0.16 -1.83 16 3 C -0.16 -4.13 5.74 -10.79 -0.06 -4.19 16 4 H 0.11 2.84 8.07 -2.39 -0.02 2.82 16 5 C -0.17 -4.71 10.10 30.59 0.31 -4.40 16 6 C 0.08 2.60 5.30 44.99 0.24 2.84 16 7 H 0.12 5.01 6.44 -2.39 -0.02 4.99 16 8 N -1.08 -33.86 5.74 -169.38 -0.97 -34.83 16 9 S 2.81 109.33 6.08 -56.49 -0.34 108.99 16 10 O -1.01 -39.63 17.21 -128.00 -2.20 -41.84 16 11 O -1.02 -48.02 16.45 -128.00 -2.11 -50.12 16 12 N -1.00 -40.61 3.23 -543.23 -1.75 -42.36 16 13 C 0.10 3.24 10.31 127.77 1.32 4.56 16 14 C 0.25 12.60 5.41 85.63 0.46 13.07 16 15 C -0.53 -26.59 7.36 25.60 0.19 -26.40 16 16 H 0.08 3.81 7.05 -2.91 -0.02 3.79 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.93 -53.14 13.29 21.45 0.28 -52.86 16 19 Si 0.95 40.34 29.54 68.60 2.03 42.36 16 20 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.25 -9.41 7.05 99.48 0.70 -8.70 16 23 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.37 7.82 -2.39 -0.02 1.35 16 28 H 0.09 2.70 8.08 -2.39 -0.02 2.68 16 29 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 30 H 0.42 10.38 8.28 -96.75 -0.80 9.58 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 34 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 35 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 36 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -64.71 311.29 -1.02 -65.72 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.26 Total: 22.06 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.79 Total: -17.13 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -2.44 Total: -130.04 kcal Atomic # 8 Polarization: -87.65 SS G_CDS: -4.31 Total: -91.96 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 109.33 SS G_CDS: -0.34 Total: 108.99 kcal Total: -64.71 -1.02 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713356102.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.955 kcal (2) G-P(sol) polarization free energy of solvation -64.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds