Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00270 * 2 1 4 4 C 1.50696 * 109.47419 * 270.00232 * 3 2 1 5 5 O 1.20764 * 120.00371 * 125.00001 * 4 3 2 6 6 C 1.34782 * 119.99363 * 180.02562 * 2 1 3 7 7 O 1.21583 * 119.99434 * 180.02562 * 6 2 1 8 8 N 1.34766 * 120.00468 * 359.97438 * 6 2 1 9 9 C 1.39242 * 120.00414 * 184.28135 * 8 6 2 10 10 C 1.39484 * 119.83039 * 324.71927 * 9 8 6 11 11 C 1.36371 * 120.16871 * 180.25461 * 10 9 8 12 12 C 1.40863 * 119.83084 * 359.49979 * 11 10 9 13 13 C 1.41149 * 120.16868 * 180.22954 * 12 11 10 14 14 H 1.08004 * 120.00655 * 215.05700 * 13 12 11 15 15 C 1.39894 * 120.00204 * 35.05458 * 13 12 11 16 16 N 1.30884 * 119.99519 * 355.51809 * 15 13 12 17 17 Si 1.86797 * 120.00319 * 175.51402 * 15 13 12 18 18 H 1.48501 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47075 * 120.00371 * 17 15 13 20 20 H 1.48507 * 109.47075 * 240.00068 * 17 15 13 21 21 C 1.40876 * 119.66683 * 0.52515 * 12 11 10 22 22 C 1.36370 * 119.83380 * 359.72648 * 21 12 11 23 23 H 1.08999 * 109.46746 * 270.00298 * 1 2 3 24 24 H 1.09001 * 109.46830 * 30.00016 * 1 2 3 25 25 H 1.08997 * 109.47230 * 149.99693 * 1 2 3 26 26 H 1.09002 * 109.47405 * 30.00178 * 3 2 1 27 27 H 1.09007 * 109.47445 * 150.00116 * 3 2 1 28 28 H 1.08005 * 120.00154 * 304.99889 * 4 3 2 29 29 H 0.97003 * 120.00196 * 4.28350 * 8 6 2 30 30 H 1.08005 * 119.91366 * 359.97438 * 10 9 8 31 31 H 1.08005 * 120.08455 * 179.75033 * 11 10 9 32 32 H 0.97000 * 120.00077 * 179.97438 * 16 15 13 33 33 H 1.08006 * 120.08107 * 179.70752 * 21 12 11 34 34 H 1.07999 * 119.91890 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4207 5 8 2.0903 2.7962 -1.7901 6 6 2.1388 -1.1673 -0.0005 7 8 3.3546 -1.1673 -0.0001 8 7 1.4650 -2.3344 -0.0005 9 6 2.1582 -3.5387 0.0890 10 6 3.4028 -3.6702 -0.5268 11 6 4.0854 -4.8482 -0.4479 12 6 3.5351 -5.9304 0.2665 13 6 4.2377 -7.1513 0.3568 14 1 3.6970 -8.0862 0.3645 15 6 5.6344 -7.1504 0.4363 16 7 6.2946 -6.0246 0.3387 17 14 6.5569 -8.7560 0.6818 18 1 5.5866 -9.8774 0.7606 19 1 7.4774 -8.9779 -0.4622 20 1 7.3403 -8.6892 1.9417 21 6 2.2773 -5.7900 0.8852 22 6 1.6042 -4.6076 0.7933 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 2.9493 1.0385 -2.1088 29 1 0.4969 -2.3356 -0.0629 30 1 3.8250 -2.8384 -1.0712 31 1 5.0472 -4.9498 -0.9286 32 1 7.2630 -6.0239 0.3942 33 1 1.8470 -6.6170 1.4307 34 1 0.6397 -4.4986 1.2668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714627203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = -24.101206 kcal Electronic energy + Delta-G solvation = -18902.573814 eV Core-core repulsion = 15801.333552 eV Total energy + Delta-G solvation = -3101.240262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35918 -39.08292 -37.52595 -35.42732 -34.54160 -32.90489 -29.68488 -29.45848 -28.53438 -26.46167 -24.68571 -22.25186 -21.33020 -20.80334 -19.38138 -18.07054 -17.28519 -16.99599 -16.17883 -15.98369 -15.42634 -15.03353 -14.44921 -13.99876 -13.85200 -13.69401 -13.41978 -12.98120 -12.73606 -12.59741 -12.08336 -12.01094 -11.74653 -11.41880 -11.17857 -10.90994 -10.50445 -10.29312 -10.01208 -9.88535 -9.63865 -9.08393 -8.80638 -8.66496 -7.51563 -6.87295 -6.58246 -4.32091 1.63439 2.65462 2.86638 3.04937 3.11729 3.13448 3.17588 3.55243 3.99947 4.17448 4.23426 4.73276 4.81801 4.86752 5.19490 5.28321 5.43877 5.58273 5.66306 6.11494 6.18465 6.36497 6.72322 6.79632 7.04745 7.10615 7.15354 7.26362 7.33007 7.65519 7.76539 8.00109 8.10797 8.27311 8.37426 8.68723 8.87705 8.95019 9.04687 10.32925 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.004173 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.144149 B = 6707.687904 C = 7284.788977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.633 5.633 3 C 0.070 3.930 4 C 0.339 3.661 5 O -0.466 6.466 6 C 0.695 3.305 7 O -0.568 6.568 8 N -0.663 5.663 9 C 0.019 3.981 10 C -0.093 4.093 11 C -0.143 4.143 12 C 0.099 3.901 13 C -0.464 4.464 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.808 5.808 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.203 4.203 22 C -0.114 4.114 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.098 0.902 29 H 0.392 0.608 30 H 0.109 0.891 31 H 0.130 0.870 32 H 0.277 0.723 33 H 0.096 0.904 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 8.839 -0.673 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.375 5.375 3 C -0.054 4.054 4 C 0.193 3.807 5 O -0.336 6.336 6 C 0.397 3.603 7 O -0.444 6.444 8 N -0.310 5.310 9 C -0.073 4.073 10 C -0.113 4.113 11 C -0.163 4.163 12 C 0.097 3.903 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.146 4.146 16 N -0.435 5.435 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.200 1.200 21 C -0.223 4.223 22 C -0.135 4.135 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.227 0.773 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.023 9.539 -0.861 12.494 hybrid contribution -0.062 -0.722 0.348 0.804 sum -8.084 8.817 -0.512 11.973 Atomic orbital electron populations 1.21767 0.79582 1.03023 1.02071 1.46876 1.06257 1.04201 1.80152 1.22122 1.00622 0.85667 0.97031 1.26698 0.74114 0.87441 0.92449 1.90388 1.40630 1.23518 1.79035 1.15992 0.85539 0.80242 0.78561 1.90948 1.11189 1.85433 1.56814 1.42241 1.09092 1.03681 1.76019 1.17103 0.96639 0.84540 1.09060 1.20659 0.93858 0.97645 0.99135 1.21305 1.01051 0.92796 1.01190 1.17726 0.90501 0.93651 0.88429 1.19511 0.91149 0.93734 1.45063 0.90625 1.25884 0.98127 0.97666 0.92922 1.69801 1.09043 1.26816 1.37853 0.86168 0.79506 0.81908 0.78487 1.18639 1.20009 1.20021 1.20679 0.98899 0.96571 1.06177 1.20041 0.99139 0.94162 1.00133 0.92277 0.90963 0.91135 0.88477 0.86418 0.88552 0.77307 0.87320 0.85210 0.91155 0.88535 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.24 59.85 0.61 1.26 16 2 N -0.63 -7.66 2.86 -188.75 -0.54 -8.20 16 3 C 0.07 0.75 5.98 -5.20 -0.03 0.71 16 4 C 0.34 3.79 11.51 36.00 0.41 4.21 16 5 O -0.47 -6.36 17.90 6.00 0.11 -6.26 16 6 C 0.69 11.79 8.11 -86.92 -0.70 11.09 16 7 O -0.57 -12.01 13.34 5.29 0.07 -11.94 16 8 N -0.66 -11.23 5.18 -14.10 -0.07 -11.30 16 9 C 0.02 0.41 6.31 -83.57 -0.53 -0.12 16 10 C -0.09 -2.26 8.61 -39.79 -0.34 -2.60 16 11 C -0.14 -3.80 8.61 -39.26 -0.34 -4.13 16 12 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 13 C -0.46 -12.29 9.02 -37.86 -0.34 -12.63 16 14 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 15 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 16 N -0.81 -21.45 10.61 55.55 0.59 -20.86 16 17 Si 0.91 19.02 29.56 -169.99 -5.03 14.00 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.20 -4.83 9.74 -39.26 -0.38 -5.21 16 22 C -0.11 -2.44 9.90 -39.79 -0.39 -2.83 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 25 H 0.07 0.52 6.30 -51.93 -0.33 0.19 16 26 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 27 H 0.12 1.36 7.42 -51.92 -0.39 0.97 16 28 H 0.10 1.05 8.06 -52.48 -0.42 0.62 16 29 H 0.39 5.11 6.51 -40.82 -0.27 4.85 16 30 H 0.11 2.65 6.22 -52.48 -0.33 2.33 16 31 H 0.13 3.61 6.15 -52.48 -0.32 3.28 16 32 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 33 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 34 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -31.73 296.97 -6.82 -38.55 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.70 Total: 8.09 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.72 Total: -6.54 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.02 Total: -40.37 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.73 -6.82 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714627203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.445 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds