Wall clock time and date at job start Mon Mar 30 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46489 * 120.00270 * 2 1 4 4 C 1.50696 * 109.47419 * 270.00232 * 3 2 1 5 5 O 1.20764 * 120.00371 * 125.00001 * 4 3 2 6 6 C 1.34782 * 119.99363 * 180.02562 * 2 1 3 7 7 O 1.21583 * 119.99434 * 180.02562 * 6 2 1 8 8 N 1.34766 * 120.00468 * 359.97438 * 6 2 1 9 9 C 1.39242 * 120.00414 * 184.28135 * 8 6 2 10 10 C 1.39484 * 119.83039 * 324.71927 * 9 8 6 11 11 C 1.36371 * 120.16871 * 180.25461 * 10 9 8 12 12 C 1.40863 * 119.83084 * 359.49979 * 11 10 9 13 13 C 1.41149 * 120.16868 * 180.22954 * 12 11 10 14 14 H 1.08004 * 120.00655 * 215.05700 * 13 12 11 15 15 C 1.39894 * 120.00204 * 35.05458 * 13 12 11 16 16 N 1.30884 * 119.99519 * 355.51809 * 15 13 12 17 17 Si 1.86797 * 120.00319 * 175.51402 * 15 13 12 18 18 H 1.48501 * 109.47231 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47075 * 120.00371 * 17 15 13 20 20 H 1.48507 * 109.47075 * 240.00068 * 17 15 13 21 21 C 1.40876 * 119.66683 * 0.52515 * 12 11 10 22 22 C 1.36370 * 119.83380 * 359.72648 * 21 12 11 23 23 H 1.08999 * 109.46746 * 270.00298 * 1 2 3 24 24 H 1.09001 * 109.46830 * 30.00016 * 1 2 3 25 25 H 1.08997 * 109.47230 * 149.99693 * 1 2 3 26 26 H 1.09002 * 109.47405 * 30.00178 * 3 2 1 27 27 H 1.09007 * 109.47445 * 150.00116 * 3 2 1 28 28 H 1.08005 * 120.00154 * 304.99889 * 4 3 2 29 29 H 0.97003 * 120.00196 * 4.28350 * 8 6 2 30 30 H 1.08005 * 119.91366 * 359.97438 * 10 9 8 31 31 H 1.08005 * 120.08455 * 179.75033 * 11 10 9 32 32 H 0.97000 * 120.00077 * 179.97438 * 16 15 13 33 33 H 1.08006 * 120.08107 * 179.70752 * 21 12 11 34 34 H 1.07999 * 119.91890 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4207 5 8 2.0903 2.7962 -1.7901 6 6 2.1388 -1.1673 -0.0005 7 8 3.3546 -1.1673 -0.0001 8 7 1.4650 -2.3344 -0.0005 9 6 2.1582 -3.5387 0.0890 10 6 3.4028 -3.6702 -0.5268 11 6 4.0854 -4.8482 -0.4479 12 6 3.5351 -5.9304 0.2665 13 6 4.2377 -7.1513 0.3568 14 1 3.6970 -8.0862 0.3645 15 6 5.6344 -7.1504 0.4363 16 7 6.2946 -6.0246 0.3387 17 14 6.5569 -8.7560 0.6818 18 1 5.5866 -9.8774 0.7606 19 1 7.4774 -8.9779 -0.4622 20 1 7.3403 -8.6892 1.9417 21 6 2.2773 -5.7900 0.8852 22 6 1.6042 -4.6076 0.7933 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 2.9493 1.0385 -2.1088 29 1 0.4969 -2.3356 -0.0629 30 1 3.8250 -2.8384 -1.0712 31 1 5.0472 -4.9498 -0.9286 32 1 7.2630 -6.0239 0.3942 33 1 1.8470 -6.6170 1.4307 34 1 0.6397 -4.4986 1.2668 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714627203.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:38 Heat of formation + Delta-G solvation = -44.413120 kcal Electronic energy + Delta-G solvation = -18903.454605 eV Core-core repulsion = 15801.333552 eV Total energy + Delta-G solvation = -3102.121053 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66521 -40.18540 -39.19953 -36.63784 -36.18183 -34.64604 -31.39855 -31.05157 -29.81542 -27.57226 -26.33451 -23.50747 -23.07333 -22.32367 -20.77667 -19.34159 -19.16823 -18.21139 -17.34008 -17.16827 -17.02971 -16.40264 -15.77875 -15.63167 -15.19819 -14.80059 -14.67798 -14.46590 -14.09573 -13.91429 -13.56726 -13.43350 -13.26081 -12.85484 -12.80833 -12.60859 -12.26807 -11.76214 -11.64218 -11.31404 -11.25015 -10.89180 -10.51629 -9.71352 -9.39567 -8.66781 -8.46017 -6.28614 0.66793 0.91331 1.18504 1.41099 1.48365 1.56721 1.73964 2.14209 2.26662 2.85822 3.03271 3.32669 3.74035 3.98251 4.20669 4.32870 4.47815 4.53934 4.62021 4.74240 4.86281 5.02617 5.11673 5.19283 5.32044 5.38937 5.48197 5.69100 5.80139 6.03141 6.15461 6.19973 6.22649 6.41700 6.76306 6.97774 7.00967 7.07532 7.59788 8.47178 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.038130 B = 0.004173 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.144149 B = 6707.687904 C = 7284.788977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.622 5.622 3 C 0.072 3.928 4 C 0.351 3.649 5 O -0.488 6.488 6 C 0.692 3.308 7 O -0.616 6.616 8 N -0.655 5.655 9 C 0.039 3.961 10 C -0.107 4.107 11 C -0.167 4.167 12 C 0.064 3.936 13 C -0.498 4.498 14 H 0.078 0.922 15 C 0.023 3.977 16 N -0.848 5.848 17 Si 0.989 3.011 18 H -0.254 1.254 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.208 4.208 22 C -0.108 4.108 23 H 0.077 0.923 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.127 0.873 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.415 0.585 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.281 0.719 33 H 0.112 0.888 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.269 9.333 0.177 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.361 5.361 3 C -0.052 4.052 4 C 0.207 3.793 5 O -0.359 6.359 6 C 0.394 3.606 7 O -0.495 6.495 8 N -0.304 5.304 9 C -0.055 4.055 10 C -0.127 4.127 11 C -0.187 4.187 12 C 0.062 3.938 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.476 5.476 17 Si 0.810 3.190 18 H -0.178 1.178 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.228 4.228 22 C -0.128 4.128 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.254 0.746 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.417 10.078 -0.016 14.494 hybrid contribution 0.502 -0.668 0.067 0.839 sum -9.914 9.410 0.051 13.669 Atomic orbital electron populations 1.22100 0.76567 1.04641 1.03817 1.46851 1.07987 1.02897 1.78404 1.22219 1.00820 0.85490 0.96709 1.26713 0.73121 0.86826 0.92654 1.90393 1.41704 1.24413 1.79428 1.16172 0.85056 0.81292 0.78103 1.90932 1.13575 1.86323 1.58681 1.42000 1.10055 1.02324 1.76055 1.17130 0.95476 0.86292 1.06646 1.20686 0.95385 0.96652 0.99988 1.21168 1.00771 0.94225 1.02583 1.18051 0.92163 0.93941 0.89647 1.19784 0.92216 0.93970 1.46898 0.90373 1.26800 0.98686 1.01203 0.92090 1.69920 1.09427 1.29073 1.39205 0.85055 0.78038 0.77432 0.78479 1.17783 1.19353 1.19546 1.20943 0.98019 0.98138 1.05726 1.20400 1.00550 0.92754 0.99136 0.90407 0.88911 0.90081 0.85482 0.87420 0.88471 0.74607 0.88140 0.87861 0.90845 0.87019 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 10.24 127.77 1.31 2.15 16 2 N -0.62 -13.26 2.86 -869.34 -2.48 -15.75 16 3 C 0.07 1.36 5.98 85.63 0.51 1.87 16 4 C 0.35 7.32 11.51 71.23 0.82 8.14 16 5 O -0.49 -12.53 17.90 -1.46 -0.03 -12.56 16 6 C 0.69 22.29 8.11 179.06 1.45 23.74 16 7 O -0.62 -26.06 13.34 -3.98 -0.05 -26.11 16 8 N -0.65 -20.48 5.18 -316.79 -1.64 -22.12 16 9 C 0.04 1.62 6.31 38.57 0.24 1.86 16 10 C -0.11 -5.33 8.61 22.13 0.19 -5.14 16 11 C -0.17 -9.28 8.61 22.48 0.19 -9.08 16 12 C 0.06 3.50 5.55 -21.28 -0.12 3.39 16 13 C -0.50 -27.17 9.02 23.39 0.21 -26.96 16 14 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 15 C 0.02 1.22 5.42 85.24 0.46 1.68 16 16 N -0.85 -47.10 10.61 21.82 0.23 -46.86 16 17 Si 0.99 39.72 29.56 68.60 2.03 41.75 16 18 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 19 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 21 C -0.21 -9.74 9.74 22.48 0.22 -9.52 16 22 C -0.11 -4.34 9.90 22.13 0.22 -4.12 16 23 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.09 0.82 8.07 -2.39 -0.02 0.80 16 25 H 0.08 0.83 6.30 -2.39 -0.02 0.81 16 26 H 0.13 1.71 8.05 -2.39 -0.02 1.69 16 27 H 0.11 2.36 7.42 -2.38 -0.02 2.35 16 28 H 0.10 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.41 9.14 6.51 -92.71 -0.60 8.53 16 30 H 0.10 5.11 6.22 -2.91 -0.02 5.09 16 31 H 0.10 6.17 6.15 -2.91 -0.02 6.15 16 32 H 0.28 14.30 8.30 -92.71 -0.77 13.53 16 33 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 34 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -71.93 296.97 4.30 -67.63 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.53 Total: 26.02 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.71 Total: -12.01 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.89 Total: -84.73 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.08 Total: -38.67 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -71.93 4.30 -67.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714627203.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.221 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds