Wall clock time and date at job start Mon Mar 30 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47242 * 2 1 4 4 N 1.46500 * 109.47360 * 119.99732 * 2 1 3 5 5 S 1.65599 * 120.00197 * 265.00609 * 4 2 1 6 6 O 1.42098 * 106.40429 * 178.53808 * 5 4 2 7 7 O 1.42107 * 106.40011 * 311.45547 * 5 4 2 8 8 C 1.76191 * 107.22091 * 64.99623 * 5 4 2 9 9 H 1.07996 * 120.00632 * 359.97438 * 8 5 4 10 10 C 1.37886 * 120.00243 * 180.02562 * 8 5 4 11 11 N 1.31505 * 120.00110 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99734 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46856 * 90.00301 * 12 10 8 14 14 H 1.48497 * 109.47239 * 210.00364 * 12 10 8 15 15 H 1.48499 * 109.47133 * 330.00643 * 12 10 8 16 16 C 1.52992 * 109.47328 * 240.00040 * 2 1 3 17 17 C 1.53123 * 109.52319 * 64.99866 * 16 2 1 18 18 C 1.53039 * 109.31189 * 182.46516 * 17 16 2 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 16 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 22 22 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46935 * 299.99887 * 1 2 3 24 24 H 1.08995 * 109.47186 * 59.99896 * 1 2 3 25 25 H 0.97000 * 119.99764 * 84.99719 * 4 2 1 26 26 H 0.97009 * 119.99694 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.57673 * 185.15597 * 16 2 1 28 28 H 1.09002 * 109.50371 * 62.50065 * 17 16 2 29 29 H 1.09003 * 109.50070 * 302.42225 * 17 16 2 30 30 H 1.08995 * 109.46501 * 179.17754 * 18 17 16 31 31 H 1.09009 * 109.45500 * 299.14277 * 18 17 16 32 32 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 33 33 H 1.09001 * 109.46071 * 181.75754 * 20 19 18 34 34 H 1.09002 * 109.46350 * 301.73871 * 20 19 18 35 35 H 1.09000 * 109.50390 * 60.75234 * 21 20 19 36 36 H 1.08997 * 109.50400 * 180.83976 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7696 3.5315 7 8 3.2437 1.2444 2.1156 8 6 0.9275 0.9147 3.1474 9 1 -0.0046 0.7494 2.6276 10 6 0.9557 1.7040 4.2777 11 7 -0.1525 2.2540 4.7235 12 14 2.5680 1.9907 5.1766 13 1 3.2370 3.1945 4.6212 14 1 2.2989 2.1965 6.6224 15 1 3.4498 0.8089 5.0005 16 6 2.0401 -0.7212 -1.2492 17 6 1.6356 0.0687 -2.4970 18 6 2.0943 -0.6880 -3.7457 19 7 1.4774 -2.0204 -3.7664 20 6 1.8898 -2.8148 -2.6023 21 6 1.4248 -2.1217 -1.3195 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 2.1110 -1.6561 1.1949 26 1 -0.1326 2.8089 5.5189 27 1 3.1261 -0.8028 -1.2059 28 1 2.1060 1.0517 -2.4738 29 1 0.5519 0.1842 -2.5192 30 1 1.7948 -0.1351 -4.6360 31 1 3.1795 -0.7904 -3.7299 32 1 0.4721 -1.9526 -3.8202 33 1 1.4415 -3.8065 -2.6621 34 1 2.9758 -2.9071 -2.5919 35 1 0.3378 -2.0411 -1.3229 36 1 1.7440 -2.7039 -0.4551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716549036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:41 Heat of formation + Delta-G solvation = -95.205032 kcal Electronic energy + Delta-G solvation = -18961.749541 eV Core-core repulsion = 15992.869937 eV Total energy + Delta-G solvation = -2968.879604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41347 -35.89139 -35.45429 -34.41712 -33.04735 -31.36962 -30.80310 -28.50770 -26.34990 -24.39852 -23.02540 -21.63843 -19.41466 -19.09770 -17.50433 -16.77641 -16.05855 -15.61761 -15.01140 -14.81309 -14.41791 -14.29921 -13.94216 -13.39939 -13.15356 -13.05002 -12.80891 -12.49303 -12.14166 -11.99522 -11.57311 -11.48182 -11.38313 -10.90739 -10.73333 -10.68378 -10.60728 -10.47509 -10.39936 -10.16691 -9.77828 -9.21648 -9.18897 -8.66425 -8.40993 -6.80576 -5.34138 2.10072 3.06984 3.17422 3.26988 3.95152 4.20825 4.30522 4.59585 4.68797 4.79508 4.91130 5.08721 5.30402 5.32257 5.34775 5.43961 5.55756 5.66819 5.73247 5.82197 5.85944 5.96631 5.98166 6.02167 6.10199 6.22209 6.27836 6.37266 6.72858 6.75972 6.90846 7.25198 7.47846 7.76780 8.23179 8.71036 10.31244 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040498 B = 0.005885 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.234380 B = 4756.952407 C = 4920.653638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.160 3.840 3 H 0.091 0.909 4 N -1.119 6.119 5 S 2.674 3.326 6 O -1.011 7.011 7 O -1.013 7.013 8 C -1.016 5.016 9 H 0.126 0.874 10 C 0.153 3.847 11 N -0.824 5.824 12 Si 0.801 3.199 13 H -0.247 1.247 14 H -0.256 1.256 15 H -0.221 1.221 16 C -0.091 4.091 17 C -0.155 4.155 18 C 0.057 3.943 19 N -0.688 5.688 20 C 0.056 3.944 21 C -0.157 4.157 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.403 0.597 26 H 0.280 0.720 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.339 0.661 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -6.021 -13.653 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.052 3.948 3 H 0.109 0.891 4 N -0.874 5.874 5 S 2.776 3.224 6 O -1.002 7.002 7 O -1.003 7.003 8 C -1.150 5.150 9 H 0.144 0.856 10 C -0.066 4.066 11 N -0.453 5.453 12 Si 0.621 3.379 13 H -0.171 1.171 14 H -0.180 1.180 15 H -0.143 1.143 16 C -0.111 4.111 17 C -0.195 4.195 18 C -0.073 4.073 19 N -0.316 5.316 20 C -0.074 4.074 21 C -0.196 4.196 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.077 0.923 25 H 0.235 0.765 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.259 -5.926 -13.605 15.011 hybrid contribution -0.717 0.453 1.359 1.602 sum 1.542 -5.474 -12.245 13.501 Atomic orbital electron populations 1.22554 0.95933 1.02298 1.03109 1.20603 0.93823 0.96467 0.83894 0.89056 1.55569 1.84670 1.18582 1.28595 1.01356 0.76238 0.73402 0.71433 1.93470 1.84612 1.64003 1.58073 1.93402 1.69427 1.55804 1.81694 1.30583 1.16219 1.45280 1.22935 0.85629 1.24425 0.96798 0.91004 0.94360 1.69985 1.27260 1.26337 1.21711 0.87871 0.84315 0.83690 0.82000 1.17061 1.17961 1.14295 1.21432 1.00690 0.94837 0.94108 1.22367 1.01958 0.99930 0.95226 1.22018 0.99893 0.88677 0.96682 1.60693 1.13889 1.15392 1.41644 1.22031 1.01065 0.96498 0.87769 1.22402 1.01429 0.96493 0.99288 0.92339 0.90316 0.92282 0.76532 0.90946 0.90581 0.90954 0.91262 0.90850 0.91023 0.84388 0.90928 0.91074 0.91075 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.78 37.16 0.33 -2.42 16 2 C 0.16 2.59 2.69 -67.93 -0.18 2.41 16 3 H 0.09 1.63 7.50 -51.93 -0.39 1.24 16 4 N -1.12 -20.87 5.44 -4.89 -0.03 -20.89 16 5 S 2.67 66.15 4.22 -107.50 -0.45 65.69 16 6 O -1.01 -27.19 16.02 -57.17 -0.92 -28.11 16 7 O -1.01 -26.93 16.17 -57.17 -0.92 -27.85 16 8 C -1.02 -27.83 10.11 30.60 0.31 -27.52 16 9 H 0.13 3.41 5.86 -52.49 -0.31 3.10 16 10 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 11 N -0.82 -23.60 13.96 55.43 0.77 -22.83 16 12 Si 0.80 20.65 26.54 -169.99 -4.51 16.13 16 13 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.22 -5.83 5.61 56.52 0.32 -5.51 16 16 C -0.09 -1.14 2.23 -90.49 -0.20 -1.34 16 17 C -0.16 -1.65 5.17 -26.65 -0.14 -1.79 16 18 C 0.06 0.54 6.55 -3.84 -0.03 0.52 16 19 N -0.69 -6.58 6.87 -113.81 -0.78 -7.36 16 20 C 0.06 0.54 6.55 -3.83 -0.03 0.52 16 21 C -0.16 -1.72 4.78 -26.65 -0.13 -1.84 16 22 H 0.06 0.80 6.30 -51.93 -0.33 0.48 16 23 H 0.08 1.43 5.74 -51.93 -0.30 1.14 16 24 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 25 H 0.40 6.49 7.39 -34.47 -0.25 6.24 16 26 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 32 H 0.34 2.91 8.86 -39.29 -0.35 2.56 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.76 6.21 -51.93 -0.32 0.44 16 36 H 0.07 0.77 6.84 -51.93 -0.36 0.42 16 LS Contribution 286.21 15.07 4.31 4.31 Total: -1.00 -32.06 286.21 -7.72 -39.78 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.03 Total: 8.30 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: -0.16 Total: -27.18 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.03 Total: -51.08 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -1.84 Total: -55.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.51 Total: 16.13 kcal Atomic # 16 Polarization: 66.15 SS G_CDS: -0.45 Total: 65.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.06 -7.72 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716549036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.425 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds