Wall clock time and date at job start Mon Mar 30 2020 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47242 * 2 1 4 4 N 1.46500 * 109.47360 * 119.99732 * 2 1 3 5 5 S 1.65599 * 120.00197 * 265.00609 * 4 2 1 6 6 O 1.42098 * 106.40429 * 178.53808 * 5 4 2 7 7 O 1.42107 * 106.40011 * 311.45547 * 5 4 2 8 8 C 1.76191 * 107.22091 * 64.99623 * 5 4 2 9 9 H 1.07996 * 120.00632 * 359.97438 * 8 5 4 10 10 C 1.37886 * 120.00243 * 180.02562 * 8 5 4 11 11 N 1.31505 * 120.00110 * 180.02562 * 10 8 5 12 12 Si 1.86802 * 119.99734 * 359.97438 * 10 8 5 13 13 H 1.48503 * 109.46856 * 90.00301 * 12 10 8 14 14 H 1.48497 * 109.47239 * 210.00364 * 12 10 8 15 15 H 1.48499 * 109.47133 * 330.00643 * 12 10 8 16 16 C 1.52992 * 109.47328 * 240.00040 * 2 1 3 17 17 C 1.53123 * 109.52319 * 64.99866 * 16 2 1 18 18 C 1.53039 * 109.31189 * 182.46516 * 17 16 2 19 19 N 1.46842 * 109.52266 * 59.15550 * 18 17 16 20 20 C 1.46849 * 111.20050 * 298.25785 * 19 18 17 21 21 C 1.53036 * 109.52274 * 61.74759 * 20 19 18 22 22 H 1.08993 * 109.47179 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46935 * 299.99887 * 1 2 3 24 24 H 1.08995 * 109.47186 * 59.99896 * 1 2 3 25 25 H 0.97000 * 119.99764 * 84.99719 * 4 2 1 26 26 H 0.97009 * 119.99694 * 179.97438 * 11 10 8 27 27 H 1.09000 * 109.57673 * 185.15597 * 16 2 1 28 28 H 1.09002 * 109.50371 * 62.50065 * 17 16 2 29 29 H 1.09003 * 109.50070 * 302.42225 * 17 16 2 30 30 H 1.08995 * 109.46501 * 179.17754 * 18 17 16 31 31 H 1.09009 * 109.45500 * 299.14277 * 18 17 16 32 32 H 1.00898 * 111.00242 * 62.36287 * 19 18 17 33 33 H 1.09001 * 109.46071 * 181.75754 * 20 19 18 34 34 H 1.09002 * 109.46350 * 301.73871 * 20 19 18 35 35 H 1.09000 * 109.50390 * 60.75234 * 21 20 19 36 36 H 1.08997 * 109.50400 * 180.83976 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 16 2.4122 0.1772 2.5505 6 8 2.8124 -0.7696 3.5315 7 8 3.2437 1.2444 2.1156 8 6 0.9275 0.9147 3.1474 9 1 -0.0046 0.7494 2.6276 10 6 0.9557 1.7040 4.2777 11 7 -0.1525 2.2540 4.7235 12 14 2.5680 1.9907 5.1766 13 1 3.2370 3.1945 4.6212 14 1 2.2989 2.1965 6.6224 15 1 3.4498 0.8089 5.0005 16 6 2.0401 -0.7212 -1.2492 17 6 1.6356 0.0687 -2.4970 18 6 2.0943 -0.6880 -3.7457 19 7 1.4774 -2.0204 -3.7664 20 6 1.8898 -2.8148 -2.6023 21 6 1.4248 -2.1217 -1.3195 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 2.1110 -1.6561 1.1949 26 1 -0.1326 2.8089 5.5189 27 1 3.1261 -0.8028 -1.2059 28 1 2.1060 1.0517 -2.4738 29 1 0.5519 0.1842 -2.5192 30 1 1.7948 -0.1351 -4.6360 31 1 3.1795 -0.7904 -3.7299 32 1 0.4721 -1.9526 -3.8202 33 1 1.4415 -3.8065 -2.6621 34 1 2.9758 -2.9071 -2.5919 35 1 0.3378 -2.0411 -1.3229 36 1 1.7440 -2.7039 -0.4551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716549036.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:41 Heat of formation + Delta-G solvation = -122.248057 kcal Electronic energy + Delta-G solvation = -18962.922214 eV Core-core repulsion = 15992.869937 eV Total energy + Delta-G solvation = -2970.052277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38077 -37.71810 -36.87787 -36.50013 -35.19459 -32.53082 -31.65395 -29.77881 -28.44237 -25.45198 -23.85510 -22.63944 -21.05909 -20.45103 -19.47774 -18.68776 -17.45942 -16.88658 -16.68331 -15.94280 -15.71678 -15.53875 -15.29783 -15.10586 -14.99972 -14.39288 -13.96206 -13.78011 -13.45866 -13.40885 -13.01265 -12.85464 -12.71726 -12.66525 -12.58770 -12.46656 -12.04627 -11.77397 -11.69057 -11.35020 -11.25208 -11.18640 -11.09964 -10.28902 -9.22751 -8.95907 -7.50535 0.16148 1.03474 1.12417 1.20102 1.88056 2.41906 2.57064 3.31701 3.46759 3.74305 3.79188 3.91627 4.21607 4.27114 4.34588 4.39117 4.45422 4.53692 4.63054 4.68637 4.85300 4.93011 5.00990 5.05831 5.10766 5.17958 5.21379 5.31097 5.38936 5.45975 5.56850 6.10140 6.15348 6.32341 6.55744 6.58347 8.20825 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.040498 B = 0.005885 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.234380 B = 4756.952407 C = 4920.653638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.151 3.849 3 H 0.071 0.929 4 N -1.104 6.104 5 S 2.693 3.307 6 O -1.034 7.034 7 O -1.033 7.033 8 C -1.034 5.034 9 H 0.118 0.882 10 C 0.111 3.889 11 N -0.852 5.852 12 Si 0.821 3.179 13 H -0.241 1.241 14 H -0.221 1.221 15 H -0.232 1.232 16 C -0.085 4.085 17 C -0.152 4.152 18 C 0.062 3.938 19 N -0.690 5.690 20 C 0.061 3.939 21 C -0.155 4.155 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.085 0.915 25 H 0.417 0.583 26 H 0.290 0.710 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.347 0.653 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.062 -6.794 -15.032 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.044 3.956 3 H 0.089 0.911 4 N -0.864 5.864 5 S 2.793 3.207 6 O -1.024 7.024 7 O -1.023 7.023 8 C -1.167 5.167 9 H 0.136 0.864 10 C -0.106 4.106 11 N -0.482 5.482 12 Si 0.638 3.362 13 H -0.164 1.164 14 H -0.143 1.143 15 H -0.155 1.155 16 C -0.105 4.105 17 C -0.192 4.192 18 C -0.068 4.068 19 N -0.319 5.319 20 C -0.069 4.069 21 C -0.194 4.194 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.252 0.748 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.292 -6.694 -14.966 16.555 hybrid contribution -0.778 0.663 1.690 1.975 sum 1.514 -6.031 -13.277 14.661 Atomic orbital electron populations 1.22507 0.95004 1.03299 1.02686 1.20879 0.94614 0.95836 0.84275 0.91072 1.55094 1.84512 1.19163 1.27653 1.00575 0.75114 0.72986 0.71978 1.93429 1.84700 1.64246 1.60020 1.93372 1.69584 1.57130 1.82220 1.31077 1.17473 1.45273 1.22876 0.86375 1.25106 0.98953 0.91248 0.95299 1.70004 1.28376 1.27165 1.22702 0.87552 0.81738 0.83318 0.83545 1.16425 1.14305 1.15486 1.21381 1.00287 0.95863 0.92965 1.22369 1.02446 0.99635 0.94715 1.22000 0.99663 0.88661 0.96493 1.60690 1.14559 1.15263 1.41350 1.22005 1.00929 0.96988 0.86996 1.22408 1.01640 0.95285 1.00064 0.90622 0.93761 0.89625 0.74772 0.89930 0.91281 0.91280 0.90439 0.89343 0.91477 0.83499 0.89600 0.91490 0.90462 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.17 8.78 71.98 0.63 -4.54 16 2 C 0.15 4.77 2.69 44.99 0.12 4.89 16 3 H 0.07 2.54 7.50 -2.39 -0.02 2.52 16 4 N -1.10 -40.53 5.44 -169.39 -0.92 -41.46 16 5 S 2.69 133.40 4.22 -56.49 -0.24 133.16 16 6 O -1.03 -55.42 16.02 -128.00 -2.05 -57.47 16 7 O -1.03 -55.02 16.17 -128.00 -2.07 -57.09 16 8 C -1.03 -57.38 10.11 67.74 0.68 -56.70 16 9 H 0.12 6.57 5.86 -2.91 -0.02 6.55 16 10 C 0.11 6.34 5.47 84.66 0.46 6.81 16 11 N -0.85 -49.06 13.96 21.45 0.30 -48.76 16 12 Si 0.82 41.37 26.54 68.60 1.82 43.19 16 13 H -0.24 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.22 -9.83 7.11 99.48 0.71 -9.13 16 15 H -0.23 -12.11 5.61 99.48 0.56 -11.55 16 16 C -0.08 -1.99 2.23 -10.71 -0.02 -2.01 16 17 C -0.15 -2.90 5.17 30.65 0.16 -2.74 16 18 C 0.06 1.01 6.55 86.33 0.57 1.57 16 19 N -0.69 -11.15 6.87 -514.00 -3.53 -14.68 16 20 C 0.06 1.01 6.55 86.32 0.57 1.58 16 21 C -0.15 -3.01 4.78 30.65 0.15 -2.86 16 22 H 0.07 1.93 6.30 -2.39 -0.02 1.91 16 23 H 0.04 1.61 5.74 -2.39 -0.01 1.60 16 24 H 0.09 2.02 6.52 -2.39 -0.02 2.01 16 25 H 0.42 12.97 7.39 -96.75 -0.72 12.25 16 26 H 0.29 15.10 8.31 -92.70 -0.77 14.33 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.35 6.46 -2.39 -0.02 1.34 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.35 4.80 8.86 -89.70 -0.79 4.00 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.42 6.21 -2.39 -0.01 1.40 16 36 H 0.07 1.33 6.84 -2.39 -0.02 1.32 16 Total: -1.00 -67.91 286.21 -3.93 -71.84 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.55 Total: 25.27 kcal Atomic # 6 Polarization: -57.32 SS G_CDS: 3.31 Total: -54.01 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -4.15 Total: -104.89 kcal Atomic # 8 Polarization: -110.44 SS G_CDS: -4.12 Total: -114.56 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.82 Total: 43.19 kcal Atomic # 16 Polarization: 133.40 SS G_CDS: -0.24 Total: 133.16 kcal Total: -67.91 -3.93 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716549036.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.411 kcal (2) G-P(sol) polarization free energy of solvation -67.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds