Wall clock time and date at job start Mon Mar 30 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.36530 * 2 1 4 4 C 1.54382 * 110.32392 * 122.18044 * 2 1 3 5 5 N 1.48564 * 104.59234 * 142.74858 * 4 2 1 6 6 C 1.48554 * 104.22056 * 320.51530 * 5 4 2 7 7 C 1.54259 * 110.32311 * 237.81840 * 2 1 3 8 8 H 1.09002 * 110.32370 * 122.20864 * 7 2 1 9 9 C 1.53000 * 110.41027 * 0.04558 * 7 2 1 10 10 C 1.53001 * 109.47097 * 176.48810 * 9 7 2 11 11 N 1.46499 * 109.46895 * 180.02562 * 10 9 7 12 12 S 1.65603 * 119.99850 * 164.99701 * 11 10 9 13 13 O 1.42103 * 106.40395 * 178.53820 * 12 11 10 14 14 O 1.42099 * 106.40352 * 311.45561 * 12 11 10 15 15 C 1.76207 * 107.21813 * 64.99669 * 12 11 10 16 16 H 1.07994 * 119.99912 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99747 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00185 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99632 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47000 * 120.00197 * 19 17 15 22 22 H 1.48504 * 109.47125 * 239.99522 * 19 17 15 23 23 H 1.09002 * 109.47140 * 182.18359 * 1 2 3 24 24 H 1.09005 * 109.47359 * 302.17917 * 1 2 3 25 25 H 1.08995 * 109.47454 * 62.18471 * 1 2 3 26 26 H 1.09005 * 110.41216 * 23.97131 * 4 2 1 27 27 H 1.08997 * 110.51270 * 261.58133 * 4 2 1 28 28 H 1.00890 * 110.99656 * 80.07378 * 5 4 2 29 29 H 1.08994 * 110.41507 * 280.70128 * 6 5 4 30 30 H 1.09005 * 110.41232 * 158.26136 * 6 5 4 31 31 H 1.09005 * 109.46832 * 296.48114 * 9 7 2 32 32 H 1.08999 * 109.47420 * 56.48357 * 9 7 2 33 33 H 1.09005 * 109.46711 * 299.99377 * 10 9 7 34 34 H 1.08999 * 109.47355 * 59.99508 * 10 9 7 35 35 H 0.96996 * 120.00518 * 344.98978 * 11 10 9 36 36 H 0.97005 * 119.99472 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7710 1.2253 5 7 3.2694 -1.4828 0.7225 6 6 2.8806 -1.9422 -0.6357 7 6 2.0658 -0.7704 -1.2243 8 1 2.7081 -0.1268 -1.8253 9 6 0.9064 -1.3012 -2.0699 10 6 1.4595 -1.9848 -3.3220 11 7 0.3494 -2.4924 -4.1320 12 16 0.6098 -2.9432 -5.7040 13 8 -0.6360 -3.4159 -6.1976 14 8 1.3340 -1.8819 -6.3111 15 6 1.6933 -4.3325 -5.6757 16 1 2.0499 -4.7200 -4.7328 17 6 2.0867 -4.9241 -6.8572 18 7 1.6528 -4.4519 -8.0055 19 14 3.2347 -6.3974 -6.8271 20 1 3.5749 -6.7311 -5.4207 21 1 2.5652 -7.5598 -7.4642 22 1 4.4772 -6.0721 -7.5727 23 1 -0.3633 -1.0269 0.0392 24 1 -0.3634 0.5473 0.8698 25 1 -0.3634 0.4795 -0.9089 26 1 1.3229 -1.4849 1.5804 27 1 2.3390 -0.0794 2.0223 28 1 4.0647 -0.8635 0.6809 29 1 2.2648 -2.8392 -0.5719 30 1 3.7670 -2.1308 -1.2415 31 1 0.3314 -2.0209 -1.4872 32 1 0.2614 -0.4729 -2.3630 33 1 2.0345 -1.2651 -3.9048 34 1 2.1045 -2.8131 -3.0289 35 1 -0.5382 -2.5647 -3.7475 36 1 1.9293 -4.8685 -8.8368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721056724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:00 Heat of formation + Delta-G solvation = -106.337354 kcal Electronic energy + Delta-G solvation = -18329.538778 eV Core-core repulsion = 15360.176440 eV Total energy + Delta-G solvation = -2969.362337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.51961 -35.39340 -34.97936 -33.91728 -33.06892 -32.46781 -30.75864 -26.52693 -26.11007 -25.50225 -22.80065 -21.69408 -19.23863 -18.64154 -17.28610 -16.98040 -16.08929 -15.35676 -15.23245 -14.83252 -14.49366 -14.25812 -13.96709 -13.56648 -13.26726 -13.01409 -12.30302 -12.13410 -12.01885 -11.73784 -11.45219 -11.34441 -11.22151 -11.14661 -10.87411 -10.62703 -10.56775 -10.35549 -10.25679 -10.15404 -10.10365 -9.24042 -8.97476 -8.82014 -8.43758 -6.68277 -5.29700 2.38515 3.06728 3.15218 3.22553 4.07527 4.11426 4.48831 4.56863 4.66363 4.76415 4.86890 5.04507 5.25254 5.31807 5.36400 5.42655 5.50594 5.53626 5.72636 5.75698 5.82227 5.88782 5.94311 6.03324 6.05374 6.17227 6.34499 6.38689 6.53742 6.58430 6.88973 7.18480 7.34294 7.93946 8.01374 8.91265 10.25870 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.005286 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.203839 B = 5295.771150 C = 6021.815604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 H 0.071 0.929 4 C 0.043 3.957 5 N -0.672 5.672 6 C 0.040 3.960 7 C -0.119 4.119 8 H 0.078 0.922 9 C -0.117 4.117 10 C 0.124 3.876 11 N -1.138 6.138 12 S 2.715 3.285 13 O -1.009 7.009 14 O -1.009 7.009 15 C -1.019 5.019 16 H 0.102 0.898 17 C 0.132 3.868 18 N -0.846 5.846 19 Si 0.920 3.080 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.335 0.665 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.401 0.599 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 6.470 15.893 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 H 0.090 0.910 4 C -0.087 4.087 5 N -0.297 5.297 6 C -0.089 4.089 7 C -0.140 4.140 8 H 0.096 0.904 9 C -0.156 4.156 10 C -0.003 4.003 11 N -0.893 5.893 12 S 2.815 3.185 13 O -0.999 6.999 14 O -0.999 6.999 15 C -1.153 5.153 16 H 0.120 0.880 17 C -0.086 4.086 18 N -0.476 5.476 19 Si 0.744 3.256 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.127 6.275 15.248 16.527 hybrid contribution 0.564 -0.348 -0.154 0.680 sum 1.690 5.927 15.094 16.304 Atomic orbital electron populations 1.21896 0.94462 1.02211 1.01609 1.22521 0.96961 0.99507 0.95420 0.91041 1.23124 0.93090 0.96242 0.96234 1.63289 1.05825 1.39117 1.21503 1.23204 0.99547 0.97735 0.88445 1.22544 0.97627 0.97611 0.96257 0.90389 1.21952 0.97518 1.00473 0.95628 1.21096 0.89238 0.97985 0.91955 1.55953 1.16280 1.83032 1.34015 1.00356 0.74062 0.74897 0.69169 1.93370 1.46604 1.82725 1.77196 1.93350 1.74481 1.58415 1.73637 1.30582 1.48458 1.36275 0.99975 0.87956 1.24752 0.93463 0.96802 0.93539 1.69913 1.39510 1.39279 0.98863 0.86140 0.79700 0.80423 0.79332 1.18609 1.19630 1.19639 0.92017 0.93104 0.92073 0.90278 0.91260 0.85051 0.89785 0.90421 0.91133 0.91022 0.91011 0.92328 0.76901 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.94 37.16 0.29 -0.95 16 2 C -0.12 -1.12 3.65 -89.24 -0.33 -1.44 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.04 0.38 7.01 -2.18 -0.02 0.37 16 5 N -0.67 -6.74 7.62 -109.66 -0.84 -7.57 16 6 C 0.04 0.44 6.20 -2.18 -0.01 0.42 16 7 C -0.12 -1.27 3.07 -89.24 -0.27 -1.55 16 8 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 9 C -0.12 -1.43 3.56 -26.73 -0.10 -1.53 16 10 C 0.12 2.05 6.08 -4.04 -0.02 2.02 16 11 N -1.14 -22.22 6.00 -10.61 -0.06 -22.28 16 12 S 2.72 72.00 5.02 -107.50 -0.54 71.46 16 13 O -1.01 -29.69 18.02 -57.17 -1.03 -30.72 16 14 O -1.01 -29.55 17.49 -57.17 -1.00 -30.55 16 15 C -1.02 -28.06 9.72 30.60 0.30 -27.76 16 16 H 0.10 2.58 7.81 -52.49 -0.41 2.17 16 17 C 0.13 3.70 5.46 -17.82 -0.10 3.61 16 18 N -0.85 -25.02 13.19 55.43 0.73 -24.29 16 19 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 H 0.06 0.55 6.86 -51.93 -0.36 0.19 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 26 H 0.08 0.73 7.83 -51.93 -0.41 0.33 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.33 2.89 8.92 -39.30 -0.35 2.54 16 29 H 0.08 0.98 7.78 -51.93 -0.40 0.58 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 32 H 0.07 0.86 6.59 -51.93 -0.34 0.52 16 33 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 34 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 35 H 0.40 6.73 8.65 -34.47 -0.30 6.44 16 36 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -34.79 303.24 -8.76 -43.54 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.32 Total: 7.04 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -0.25 Total: -26.81 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.17 Total: -54.15 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -2.03 Total: -61.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 72.00 SS G_CDS: -0.54 Total: 71.46 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.79 -8.76 -43.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721056724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.793 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds