Wall clock time and date at job start Mon Mar 30 2020 05:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.36530 * 2 1 4 4 C 1.54382 * 110.32392 * 122.18044 * 2 1 3 5 5 N 1.48564 * 104.59234 * 142.74858 * 4 2 1 6 6 C 1.48554 * 104.22056 * 320.51530 * 5 4 2 7 7 C 1.54259 * 110.32311 * 237.81840 * 2 1 3 8 8 H 1.09002 * 110.32370 * 122.20864 * 7 2 1 9 9 C 1.53000 * 110.41027 * 0.04558 * 7 2 1 10 10 C 1.53001 * 109.47097 * 176.48810 * 9 7 2 11 11 N 1.46499 * 109.46895 * 180.02562 * 10 9 7 12 12 S 1.65603 * 119.99850 * 164.99701 * 11 10 9 13 13 O 1.42103 * 106.40395 * 178.53820 * 12 11 10 14 14 O 1.42099 * 106.40352 * 311.45561 * 12 11 10 15 15 C 1.76207 * 107.21813 * 64.99669 * 12 11 10 16 16 H 1.07994 * 119.99912 * 359.97438 * 15 12 11 17 17 C 1.37874 * 119.99747 * 180.02562 * 15 12 11 18 18 N 1.31519 * 120.00185 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99632 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47000 * 120.00197 * 19 17 15 22 22 H 1.48504 * 109.47125 * 239.99522 * 19 17 15 23 23 H 1.09002 * 109.47140 * 182.18359 * 1 2 3 24 24 H 1.09005 * 109.47359 * 302.17917 * 1 2 3 25 25 H 1.08995 * 109.47454 * 62.18471 * 1 2 3 26 26 H 1.09005 * 110.41216 * 23.97131 * 4 2 1 27 27 H 1.08997 * 110.51270 * 261.58133 * 4 2 1 28 28 H 1.00890 * 110.99656 * 80.07378 * 5 4 2 29 29 H 1.08994 * 110.41507 * 280.70128 * 6 5 4 30 30 H 1.09005 * 110.41232 * 158.26136 * 6 5 4 31 31 H 1.09005 * 109.46832 * 296.48114 * 9 7 2 32 32 H 1.08999 * 109.47420 * 56.48357 * 9 7 2 33 33 H 1.09005 * 109.46711 * 299.99377 * 10 9 7 34 34 H 1.08999 * 109.47355 * 59.99508 * 10 9 7 35 35 H 0.96996 * 120.00518 * 344.98978 * 11 10 9 36 36 H 0.97005 * 119.99472 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7710 1.2253 5 7 3.2694 -1.4828 0.7225 6 6 2.8806 -1.9422 -0.6357 7 6 2.0658 -0.7704 -1.2243 8 1 2.7081 -0.1268 -1.8253 9 6 0.9064 -1.3012 -2.0699 10 6 1.4595 -1.9848 -3.3220 11 7 0.3494 -2.4924 -4.1320 12 16 0.6098 -2.9432 -5.7040 13 8 -0.6360 -3.4159 -6.1976 14 8 1.3340 -1.8819 -6.3111 15 6 1.6933 -4.3325 -5.6757 16 1 2.0499 -4.7200 -4.7328 17 6 2.0867 -4.9241 -6.8572 18 7 1.6528 -4.4519 -8.0055 19 14 3.2347 -6.3974 -6.8271 20 1 3.5749 -6.7311 -5.4207 21 1 2.5652 -7.5598 -7.4642 22 1 4.4772 -6.0721 -7.5727 23 1 -0.3633 -1.0269 0.0392 24 1 -0.3634 0.5473 0.8698 25 1 -0.3634 0.4795 -0.9089 26 1 1.3229 -1.4849 1.5804 27 1 2.3390 -0.0794 2.0223 28 1 4.0647 -0.8635 0.6809 29 1 2.2648 -2.8392 -0.5719 30 1 3.7670 -2.1308 -1.2415 31 1 0.3314 -2.0209 -1.4872 32 1 0.2614 -0.4729 -2.3630 33 1 2.0345 -1.2651 -3.9048 34 1 2.1045 -2.8131 -3.0289 35 1 -0.5382 -2.5647 -3.7475 36 1 1.9293 -4.8685 -8.8368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721056724.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:59 Heat of formation + Delta-G solvation = -135.952894 kcal Electronic energy + Delta-G solvation = -18330.823004 eV Core-core repulsion = 15360.176440 eV Total energy + Delta-G solvation = -2970.646564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34495 -37.42878 -36.52734 -36.13682 -35.16811 -33.36755 -31.77746 -28.25671 -27.60563 -26.23125 -23.91694 -22.57945 -21.06574 -19.84753 -19.13276 -18.16367 -17.80885 -17.01218 -16.67822 -16.28525 -15.84290 -15.38695 -15.27491 -15.10914 -14.36636 -14.17515 -13.98723 -13.31977 -13.14390 -13.02586 -13.02397 -12.81372 -12.57354 -12.49553 -12.38552 -12.27781 -12.19589 -12.00245 -11.51344 -11.38160 -11.26138 -11.17903 -10.97222 -10.14633 -9.58746 -8.75224 -7.47930 0.37393 1.33818 1.35046 1.52653 2.21463 2.58337 3.00765 3.36141 3.64345 3.72145 3.83252 4.00803 4.15984 4.29097 4.34573 4.51221 4.57361 4.61430 4.68067 4.70092 4.75889 4.88223 4.97891 5.07594 5.09740 5.15385 5.25579 5.29669 5.36313 5.43262 5.51680 5.78027 5.90866 6.42827 6.48939 6.78964 8.21490 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.005286 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.203839 B = 5295.771150 C = 6021.815604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 H 0.079 0.921 4 C 0.045 3.955 5 N -0.680 5.680 6 C 0.039 3.961 7 C -0.117 4.117 8 H 0.075 0.925 9 C -0.106 4.106 10 C 0.116 3.884 11 N -1.122 6.122 12 S 2.720 3.280 13 O -1.046 7.046 14 O -1.046 7.046 15 C -1.039 5.039 16 H 0.121 0.879 17 C 0.069 3.931 18 N -0.895 5.895 19 Si 0.991 3.009 20 H -0.247 1.247 21 H -0.260 1.260 22 H -0.259 1.259 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.343 0.657 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.415 0.585 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 6.003 17.893 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 H 0.098 0.902 4 C -0.085 4.085 5 N -0.306 5.306 6 C -0.091 4.091 7 C -0.138 4.138 8 H 0.094 0.906 9 C -0.145 4.145 10 C -0.010 4.010 11 N -0.882 5.882 12 S 2.821 3.179 13 O -1.037 7.037 14 O -1.035 7.035 15 C -1.172 5.172 16 H 0.139 0.861 17 C -0.144 4.144 18 N -0.526 5.526 19 Si 0.809 3.191 20 H -0.169 1.169 21 H -0.185 1.185 22 H -0.183 1.183 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.158 0.842 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.249 0.751 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.942 5.831 17.262 18.323 hybrid contribution 0.281 -0.136 -0.705 0.771 sum 2.224 5.695 16.557 17.650 Atomic orbital electron populations 1.21895 0.94088 1.02214 1.02028 1.22481 0.97211 0.99626 0.94448 0.90216 1.23151 0.92552 0.96328 0.96473 1.63265 1.06640 1.39858 1.20803 1.23155 0.99337 0.97502 0.89063 1.22519 0.96905 0.97744 0.96665 0.90642 1.21899 0.98224 1.00537 0.93853 1.21383 0.88457 0.98261 0.92939 1.55326 1.18023 1.82671 1.32131 0.99840 0.73147 0.74484 0.70455 1.93308 1.47951 1.83221 1.79190 1.93297 1.75058 1.59497 1.75688 1.30922 1.48686 1.36568 1.01049 0.86129 1.26034 0.95171 1.00268 0.92938 1.70004 1.41302 1.41330 1.00002 0.85086 0.77455 0.76128 0.80388 1.16948 1.18450 1.18347 0.92288 0.91786 0.92543 0.90609 0.89630 0.84160 0.90620 0.90714 0.89921 0.90559 0.92441 0.91635 0.75106 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.94 71.98 0.57 -1.59 16 2 C -0.12 -1.84 3.65 -9.90 -0.04 -1.88 16 3 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.04 0.68 7.01 86.45 0.61 1.29 16 5 N -0.68 -12.26 7.62 -500.85 -3.82 -16.08 16 6 C 0.04 0.79 6.20 86.45 0.54 1.33 16 7 C -0.12 -2.30 3.07 -9.90 -0.03 -2.33 16 8 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 9 C -0.11 -2.44 3.56 30.59 0.11 -2.33 16 10 C 0.12 3.73 6.08 86.38 0.53 4.25 16 11 N -1.12 -43.44 6.00 -187.48 -1.12 -44.56 16 12 S 2.72 146.55 5.02 -56.49 -0.28 146.27 16 13 O -1.05 -63.01 18.02 -128.00 -2.31 -65.32 16 14 O -1.05 -62.86 17.49 -128.00 -2.24 -65.10 16 15 C -1.04 -57.07 9.72 67.73 0.66 -56.41 16 16 H 0.12 5.95 7.81 -2.91 -0.02 5.92 16 17 C 0.07 3.82 5.46 84.65 0.46 4.28 16 18 N -0.89 -53.70 13.19 21.45 0.28 -53.42 16 19 Si 0.99 41.30 29.54 68.60 2.03 43.32 16 20 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 H 0.06 0.91 6.86 -2.39 -0.02 0.90 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.06 0.90 6.71 -2.39 -0.02 0.88 16 26 H 0.08 1.22 7.83 -2.38 -0.02 1.20 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.34 5.23 8.92 -89.70 -0.80 4.43 16 29 H 0.08 1.66 7.78 -2.39 -0.02 1.64 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.08 1.73 6.89 -2.38 -0.02 1.71 16 32 H 0.08 1.71 6.59 -2.39 -0.02 1.69 16 33 H 0.06 2.02 7.75 -2.38 -0.02 2.00 16 34 H 0.07 2.02 7.53 -2.39 -0.02 2.00 16 35 H 0.42 13.65 8.65 -96.75 -0.84 12.81 16 36 H 0.30 16.02 8.31 -92.70 -0.77 15.25 16 Total: -1.00 -75.17 303.24 -4.61 -79.78 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -0.55 Total: 28.49 kcal Atomic # 6 Polarization: -56.79 SS G_CDS: 3.40 Total: -53.38 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.66 Total: -114.06 kcal Atomic # 8 Polarization: -125.87 SS G_CDS: -4.54 Total: -130.42 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 146.55 SS G_CDS: -0.28 Total: 146.27 kcal Total: -75.17 -4.61 -79.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721056724.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.175 kcal (2) G-P(sol) polarization free energy of solvation -75.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds