Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.78723 * 2 1 4 4 C 1.55105 * 110.81013 * 123.28951 * 2 1 3 5 5 N 1.48534 * 103.28309 * 155.66119 * 4 2 1 6 6 C 1.47903 * 105.82348 * 320.84701 * 5 4 2 7 7 C 1.53996 * 107.05481 * 25.33148 * 6 5 4 8 8 H 1.09003 * 110.30951 * 239.76126 * 7 6 5 9 9 C 1.53000 * 110.30695 * 117.69239 * 7 6 5 10 10 C 1.52996 * 109.47077 * 67.79027 * 9 7 6 11 11 N 1.46500 * 109.46863 * 179.97438 * 10 9 7 12 12 S 1.65606 * 120.00055 * 165.00064 * 11 10 9 13 13 O 1.42105 * 106.40008 * 311.45637 * 12 11 10 14 14 O 1.42098 * 106.40370 * 178.53822 * 12 11 10 15 15 C 1.76193 * 107.21910 * 64.99793 * 12 11 10 16 16 H 1.08002 * 120.00351 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00314 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46652 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47242 * 119.99675 * 19 17 15 22 22 H 1.48499 * 109.47269 * 239.99877 * 19 17 15 23 23 H 1.08994 * 109.47360 * 183.24842 * 1 2 3 24 24 H 1.09002 * 109.47179 * 303.25472 * 1 2 3 25 25 H 1.09007 * 109.46651 * 63.24838 * 1 2 3 26 26 H 1.09001 * 110.59123 * 37.22837 * 4 2 1 27 27 H 1.08994 * 110.82994 * 274.20501 * 4 2 1 28 28 H 1.00900 * 110.99973 * 200.33338 * 5 4 2 29 29 H 1.08995 * 109.91728 * 265.97779 * 6 5 4 30 30 H 1.09000 * 110.08191 * 144.77179 * 6 5 4 31 31 H 1.08998 * 109.46975 * 307.78346 * 9 7 6 32 32 H 1.09002 * 109.46706 * 187.78777 * 9 7 6 33 33 H 1.08996 * 109.47186 * 60.00271 * 10 9 7 34 34 H 1.09002 * 109.47149 * 299.99479 * 10 9 7 35 35 H 0.97002 * 120.00335 * 345.00104 * 11 10 9 36 36 H 0.96997 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0810 -0.7958 1.2120 5 7 3.4335 -1.2121 0.7605 6 6 3.2889 -1.5729 -0.6666 7 6 2.0771 -0.7928 -1.2092 8 1 1.3201 -1.4821 -1.5833 9 6 2.5158 0.1657 -2.3181 10 6 2.9690 -0.6390 -3.5379 11 7 3.3885 0.2789 -4.5999 12 16 4.2673 -0.2873 -5.8843 13 8 5.3239 -1.0637 -5.3365 14 8 4.4839 0.8238 -6.7433 15 6 3.2345 -1.4069 -6.7699 16 1 2.2283 -1.5992 -6.4279 17 6 3.7109 -2.0376 -7.8997 18 7 4.9360 -1.8031 -8.3166 19 14 2.6163 -3.2252 -8.8382 20 1 1.2941 -3.3147 -8.1679 21 1 2.4347 -2.7374 -10.2290 22 1 3.2499 -4.5680 -8.8634 23 1 -0.3634 -1.0259 0.0582 24 1 -0.3633 0.5635 0.8594 25 1 -0.3633 0.4626 -0.9178 26 1 1.4578 -1.6669 1.4139 27 1 2.1489 -0.1600 2.0946 28 1 3.7692 -1.9962 1.2995 29 1 3.1141 -2.6444 -0.7628 30 1 4.1874 -1.2925 -1.2164 31 1 3.3419 0.7806 -1.9610 32 1 1.6793 0.8069 -2.5961 33 1 2.1428 -1.2538 -3.8950 34 1 3.8055 -1.2801 -3.2600 35 1 3.1515 1.2182 -4.5508 36 1 5.2710 -2.2465 -9.1116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721056727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -110.050131 kcal Electronic energy + Delta-G solvation = -18205.916865 eV Core-core repulsion = 15236.393529 eV Total energy + Delta-G solvation = -2969.523336 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.19748 -35.38170 -34.96229 -33.89679 -33.05976 -32.40204 -31.02778 -26.67212 -26.10505 -25.49513 -22.79583 -20.64296 -19.93632 -18.88191 -17.40514 -16.38695 -16.16218 -15.59586 -15.28273 -14.72599 -14.54456 -13.95156 -13.72387 -13.50276 -13.20608 -13.06390 -12.60628 -12.10492 -12.01558 -11.82931 -11.44137 -11.32194 -11.22382 -11.19960 -10.89160 -10.63807 -10.57721 -10.50630 -10.23957 -10.13508 -10.01003 -9.23732 -8.95933 -8.61817 -8.42095 -6.67769 -5.29151 2.40278 3.06352 3.14731 3.21712 4.08044 4.16151 4.49586 4.51392 4.66524 4.72337 4.90202 5.13126 5.23622 5.30102 5.39051 5.49620 5.50174 5.56102 5.63096 5.82421 5.85041 5.87168 5.97905 5.99506 6.09087 6.20369 6.34915 6.41694 6.59234 6.72153 6.91063 7.20275 7.34695 7.95524 8.02379 8.91562 10.26405 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.004878 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.705399 B = 5738.509198 C = 6019.031192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.084 0.916 4 C 0.041 3.959 5 N -0.674 5.674 6 C 0.036 3.964 7 C -0.094 4.094 8 H 0.079 0.921 9 C -0.116 4.116 10 C 0.125 3.875 11 N -1.138 6.138 12 S 2.716 3.284 13 O -1.008 7.008 14 O -1.009 7.009 15 C -1.020 5.020 16 H 0.102 0.898 17 C 0.132 3.868 18 N -0.845 5.845 19 Si 0.920 3.080 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.336 0.664 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.795 0.436 15.480 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.102 0.898 4 C -0.089 4.089 5 N -0.302 5.302 6 C -0.093 4.093 7 C -0.114 4.114 8 H 0.097 0.903 9 C -0.155 4.155 10 C -0.002 4.002 11 N -0.893 5.893 12 S 2.816 3.184 13 O -0.998 6.998 14 O -0.999 6.999 15 C -1.154 5.154 16 H 0.120 0.880 17 C -0.086 4.086 18 N -0.475 5.475 19 Si 0.744 3.256 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.151 0.849 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.231 0.769 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.386 1.122 15.068 16.818 hybrid contribution -1.713 -1.489 -0.579 2.343 sum -9.099 -0.366 14.489 17.114 Atomic orbital electron populations 1.21777 0.94613 1.01755 1.01950 1.22163 0.95217 0.99935 0.93812 0.89766 1.23127 0.89489 0.98307 0.97947 1.63046 1.23691 1.40005 1.03460 1.22875 0.99323 0.97747 0.89320 1.22077 0.96947 0.97216 0.95115 0.90270 1.21852 1.01476 0.97991 0.94198 1.21097 0.99805 0.92192 0.87104 1.55953 1.76217 1.17680 1.39431 1.00347 0.73323 0.73791 0.70989 1.93353 1.55245 1.71837 1.79348 1.93369 1.85953 1.55507 1.65065 1.30598 1.15307 1.45079 1.24394 0.88013 1.24753 0.94629 0.94250 0.94927 1.69913 1.15174 1.38945 1.23478 0.86141 0.80544 0.79664 0.79236 1.18688 1.19623 1.19634 0.92748 0.92660 0.92128 0.94268 0.90431 0.84930 0.93928 0.89371 0.90912 0.91403 0.92499 0.90818 0.76859 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.16 37.16 0.34 -0.82 16 2 C -0.09 -0.89 3.21 -88.67 -0.28 -1.17 16 3 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 4 C 0.04 0.37 7.00 -1.81 -0.01 0.36 16 5 N -0.67 -7.25 7.51 -109.99 -0.83 -8.07 16 6 C 0.04 0.43 6.73 -2.75 -0.02 0.41 16 7 C -0.09 -1.05 2.59 -89.26 -0.23 -1.28 16 8 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16 9 C -0.12 -1.50 4.53 -26.73 -0.12 -1.62 16 10 C 0.13 2.10 6.06 -4.04 -0.02 2.08 16 11 N -1.14 -22.55 6.00 -10.62 -0.06 -22.62 16 12 S 2.72 72.50 5.02 -107.50 -0.54 71.96 16 13 O -1.01 -29.65 17.49 -57.17 -1.00 -30.65 16 14 O -1.01 -29.86 18.02 -57.17 -1.03 -30.89 16 15 C -1.02 -28.21 9.72 30.60 0.30 -27.91 16 16 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 17 C 0.13 3.71 5.46 -17.81 -0.10 3.61 16 18 N -0.85 -25.06 13.19 55.43 0.73 -24.33 16 19 Si 0.92 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 23 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.33 8.02 -51.93 -0.42 -0.08 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.34 3.04 8.92 -39.29 -0.35 2.69 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 1.19 6.81 -51.93 -0.35 0.84 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 35 H 0.40 6.86 8.65 -34.47 -0.30 6.57 16 36 H 0.29 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 308.45 15.07 4.65 4.65 Total: -1.00 -34.99 308.45 -8.75 -43.74 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.50 Total: 6.94 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: -0.15 Total: -26.35 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.16 Total: -55.02 kcal Atomic # 8 Polarization: -59.51 SS G_CDS: -2.03 Total: -61.54 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 72.50 SS G_CDS: -0.54 Total: 71.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.99 -8.75 -43.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721056727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.306 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds