Wall clock time and date at job start Mon Mar 30 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.78723 * 2 1 4 4 C 1.55105 * 110.81013 * 123.28951 * 2 1 3 5 5 N 1.48534 * 103.28309 * 155.66119 * 4 2 1 6 6 C 1.47903 * 105.82348 * 320.84701 * 5 4 2 7 7 C 1.53996 * 107.05481 * 25.33148 * 6 5 4 8 8 H 1.09003 * 110.30951 * 239.76126 * 7 6 5 9 9 C 1.53000 * 110.30695 * 117.69239 * 7 6 5 10 10 C 1.52996 * 109.47077 * 67.79027 * 9 7 6 11 11 N 1.46500 * 109.46863 * 179.97438 * 10 9 7 12 12 S 1.65606 * 120.00055 * 165.00064 * 11 10 9 13 13 O 1.42105 * 106.40008 * 311.45637 * 12 11 10 14 14 O 1.42098 * 106.40370 * 178.53822 * 12 11 10 15 15 C 1.76193 * 107.21910 * 64.99793 * 12 11 10 16 16 H 1.08002 * 120.00351 * 0.02562 * 15 12 11 17 17 C 1.37881 * 120.00314 * 180.02562 * 15 12 11 18 18 N 1.31523 * 119.99660 * 359.97438 * 17 15 12 19 19 Si 1.86796 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46652 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47242 * 119.99675 * 19 17 15 22 22 H 1.48499 * 109.47269 * 239.99877 * 19 17 15 23 23 H 1.08994 * 109.47360 * 183.24842 * 1 2 3 24 24 H 1.09002 * 109.47179 * 303.25472 * 1 2 3 25 25 H 1.09007 * 109.46651 * 63.24838 * 1 2 3 26 26 H 1.09001 * 110.59123 * 37.22837 * 4 2 1 27 27 H 1.08994 * 110.82994 * 274.20501 * 4 2 1 28 28 H 1.00900 * 110.99973 * 200.33338 * 5 4 2 29 29 H 1.08995 * 109.91728 * 265.97779 * 6 5 4 30 30 H 1.09000 * 110.08191 * 144.77179 * 6 5 4 31 31 H 1.08998 * 109.46975 * 307.78346 * 9 7 6 32 32 H 1.09002 * 109.46706 * 187.78777 * 9 7 6 33 33 H 1.08996 * 109.47186 * 60.00271 * 10 9 7 34 34 H 1.09002 * 109.47149 * 299.99479 * 10 9 7 35 35 H 0.97002 * 120.00335 * 345.00104 * 11 10 9 36 36 H 0.96997 * 119.99726 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0810 -0.7958 1.2120 5 7 3.4335 -1.2121 0.7605 6 6 3.2889 -1.5729 -0.6666 7 6 2.0771 -0.7928 -1.2092 8 1 1.3201 -1.4821 -1.5833 9 6 2.5158 0.1657 -2.3181 10 6 2.9690 -0.6390 -3.5379 11 7 3.3885 0.2789 -4.5999 12 16 4.2673 -0.2873 -5.8843 13 8 5.3239 -1.0637 -5.3365 14 8 4.4839 0.8238 -6.7433 15 6 3.2345 -1.4069 -6.7699 16 1 2.2283 -1.5992 -6.4279 17 6 3.7109 -2.0376 -7.8997 18 7 4.9360 -1.8031 -8.3166 19 14 2.6163 -3.2252 -8.8382 20 1 1.2941 -3.3147 -8.1679 21 1 2.4347 -2.7374 -10.2290 22 1 3.2499 -4.5680 -8.8634 23 1 -0.3634 -1.0259 0.0582 24 1 -0.3633 0.5635 0.8594 25 1 -0.3633 0.4626 -0.9178 26 1 1.4578 -1.6669 1.4139 27 1 2.1489 -0.1600 2.0946 28 1 3.7692 -1.9962 1.2995 29 1 3.1141 -2.6444 -0.7628 30 1 4.1874 -1.2925 -1.2164 31 1 3.3419 0.7806 -1.9610 32 1 1.6793 0.8069 -2.5961 33 1 2.1428 -1.2538 -3.8950 34 1 3.8055 -1.2801 -3.2600 35 1 3.1515 1.2182 -4.5508 36 1 5.2710 -2.2465 -9.1116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721056727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:03 Heat of formation + Delta-G solvation = -139.728128 kcal Electronic energy + Delta-G solvation = -18207.203799 eV Core-core repulsion = 15236.393529 eV Total energy + Delta-G solvation = -2970.810270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06458 -37.42334 -36.54724 -36.12972 -35.16701 -33.26043 -32.12451 -28.25798 -27.72460 -26.31686 -23.93954 -21.58584 -21.09462 -20.64144 -19.33789 -18.19413 -17.28481 -17.06273 -16.76833 -16.38543 -15.95743 -15.51239 -15.28590 -14.69938 -14.21727 -14.00873 -13.87824 -13.55667 -13.33116 -13.05044 -13.01928 -12.90407 -12.52273 -12.47582 -12.42807 -12.37645 -12.27356 -12.02908 -11.56607 -11.44018 -11.26250 -11.21899 -10.97076 -10.14981 -9.43294 -8.75007 -7.48035 0.37781 1.34044 1.34884 1.52602 2.21537 2.58467 3.01030 3.37777 3.61327 3.73289 3.76189 3.88757 4.22150 4.30914 4.32232 4.49397 4.53979 4.65296 4.67945 4.72187 4.79431 4.84927 4.92223 5.02047 5.11015 5.22572 5.27130 5.28884 5.34165 5.42247 5.46790 5.89870 5.90701 6.42988 6.45897 6.78737 8.21818 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.004878 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.705399 B = 5738.509198 C = 6019.031192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.078 0.922 4 C 0.042 3.958 5 N -0.686 5.686 6 C 0.034 3.966 7 C -0.092 4.092 8 H 0.087 0.913 9 C -0.105 4.105 10 C 0.116 3.884 11 N -1.122 6.122 12 S 2.719 3.281 13 O -1.045 7.045 14 O -1.047 7.047 15 C -1.039 5.039 16 H 0.121 0.879 17 C 0.068 3.932 18 N -0.895 5.895 19 Si 0.993 3.007 20 H -0.246 1.246 21 H -0.260 1.260 22 H -0.259 1.259 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.344 0.656 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.415 0.585 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 -0.255 16.353 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.087 4.087 5 N -0.315 5.315 6 C -0.096 4.096 7 C -0.112 4.112 8 H 0.106 0.894 9 C -0.144 4.144 10 C -0.010 4.010 11 N -0.882 5.882 12 S 2.820 3.180 13 O -1.035 7.035 14 O -1.037 7.037 15 C -1.173 5.173 16 H 0.139 0.861 17 C -0.145 4.145 18 N -0.526 5.526 19 Si 0.811 3.189 20 H -0.169 1.169 21 H -0.184 1.184 22 H -0.184 1.184 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.160 0.840 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.884 0.457 15.966 18.783 hybrid contribution -0.908 -1.231 -0.752 1.705 sum -10.792 -0.775 15.214 18.669 Atomic orbital electron populations 1.21752 0.93162 1.02284 1.02516 1.22150 0.96342 0.99331 0.92975 0.90321 1.23184 0.88701 0.98812 0.98004 1.63006 1.24963 1.40585 1.02972 1.22818 0.98592 0.98177 0.89998 1.22082 0.96851 0.97136 0.95137 0.89428 1.21776 1.01846 0.97963 0.92838 1.21385 0.99600 0.92310 0.87664 1.55335 1.75479 1.18897 1.38493 0.99863 0.73533 0.73152 0.71446 1.93300 1.57458 1.72680 1.80063 1.93306 1.86855 1.56539 1.66995 1.30925 1.16203 1.45298 1.24848 0.86059 1.26059 0.96166 0.96222 0.96044 1.70007 1.17397 1.40629 1.24613 0.85066 0.78817 0.77097 0.77934 1.16878 1.18445 1.18367 0.92313 0.91449 0.92178 0.93112 0.89491 0.83996 0.93441 0.91844 0.91451 0.89584 0.91408 0.92376 0.75100 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.16 71.98 0.66 -1.19 16 2 C -0.09 -1.51 3.21 -9.53 -0.03 -1.54 16 3 H 0.08 1.43 7.86 -2.38 -0.02 1.42 16 4 C 0.04 0.68 7.00 86.71 0.61 1.28 16 5 N -0.69 -13.88 7.51 -501.89 -3.77 -17.65 16 6 C 0.03 0.77 6.73 86.45 0.58 1.35 16 7 C -0.09 -1.91 2.59 -9.91 -0.03 -1.93 16 8 H 0.09 1.68 7.85 -2.39 -0.02 1.66 16 9 C -0.11 -2.55 4.53 30.59 0.14 -2.42 16 10 C 0.12 3.83 6.06 86.38 0.52 4.36 16 11 N -1.12 -44.26 6.00 -187.50 -1.12 -45.38 16 12 S 2.72 147.86 5.02 -56.49 -0.28 147.57 16 13 O -1.05 -63.43 17.49 -128.00 -2.24 -65.66 16 14 O -1.05 -63.53 18.02 -128.00 -2.31 -65.84 16 15 C -1.04 -57.23 9.72 67.74 0.66 -56.58 16 16 H 0.12 5.97 7.81 -2.91 -0.02 5.94 16 17 C 0.07 3.78 5.46 84.65 0.46 4.24 16 18 N -0.89 -53.86 13.19 21.45 0.28 -53.57 16 19 Si 0.99 41.17 29.54 68.60 2.03 43.20 16 20 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H 0.06 0.74 8.10 -2.39 -0.02 0.72 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.05 0.72 8.02 -2.39 -0.02 0.70 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.34 5.82 8.92 -89.69 -0.80 5.02 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.76 6.81 -2.39 -0.02 1.74 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.10 6.58 -2.39 -0.02 2.09 16 35 H 0.42 13.96 8.65 -96.74 -0.84 13.12 16 36 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -76.05 308.45 -4.39 -80.45 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.55 Total: 29.31 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.57 Total: -52.42 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.61 Total: -116.61 kcal Atomic # 8 Polarization: -126.96 SS G_CDS: -4.54 Total: -131.50 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 147.86 SS G_CDS: -0.28 Total: 147.57 kcal Total: -76.05 -4.39 -80.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721056727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.280 kcal (2) G-P(sol) polarization free energy of solvation -76.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds