Wall clock time and date at job start Mon Mar 30 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00355 * 2 1 4 4 H 1.09002 * 109.47043 * 324.99919 * 3 2 1 5 5 C 1.53002 * 109.47394 * 84.99974 * 3 2 1 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46978 * 300.00098 * 6 5 3 8 8 C 1.53002 * 109.47128 * 59.99726 * 7 6 5 9 9 C 1.52992 * 109.47106 * 300.00123 * 8 7 6 10 10 H 1.08998 * 109.46862 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46999 * 299.99813 * 9 8 7 12 12 S 1.65593 * 120.00064 * 265.00246 * 11 9 8 13 13 O 1.42104 * 106.40348 * 178.54115 * 12 11 9 14 14 O 1.42103 * 106.40461 * 311.46089 * 12 11 9 15 15 C 1.76200 * 107.21941 * 65.00118 * 12 11 9 16 16 H 1.07999 * 120.00071 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00008 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99969 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99847 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47070 * 90.00113 * 19 17 15 21 21 H 1.48499 * 109.47036 * 209.99630 * 19 17 15 22 22 H 1.48499 * 109.47077 * 330.00089 * 19 17 15 23 23 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46948 * 300.00869 * 1 2 3 25 25 H 1.09006 * 109.47033 * 59.99701 * 1 2 3 26 26 H 1.00901 * 110.99813 * 123.95342 * 2 1 3 27 27 H 1.09000 * 109.46986 * 300.00133 * 5 3 2 28 28 H 1.09002 * 109.47075 * 59.99404 * 5 3 2 29 29 H 1.09002 * 109.47045 * 59.99931 * 6 5 3 30 30 H 1.08998 * 109.47171 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.46698 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46838 * 299.99316 * 7 6 5 33 33 H 1.09002 * 109.47070 * 60.00059 * 8 7 6 34 34 H 1.08996 * 109.46550 * 179.97438 * 8 7 6 35 35 H 0.97004 * 119.99556 * 85.00646 * 11 9 8 36 36 H 0.97000 * 120.00061 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0609 1.8926 1.4370 6 6 2.6087 3.3212 1.4370 7 6 4.0119 3.3293 0.8271 8 6 3.9465 2.8080 -0.6099 9 6 3.3987 1.3795 -0.6098 10 1 3.3525 1.0081 -1.6335 11 7 4.2804 0.5185 0.1823 12 16 5.4696 -0.3593 -0.5643 13 8 6.1620 -1.0534 0.4645 14 8 4.8541 -1.0139 -1.6652 15 6 6.6164 0.7910 -1.2472 16 1 6.4535 1.8519 -1.1270 17 6 7.7222 0.3368 -1.9341 18 7 7.9214 -0.9551 -2.0792 19 14 8.9383 1.5563 -2.6575 20 1 9.9926 1.8572 -1.6559 21 1 9.5617 0.9724 -3.8721 22 1 8.2273 2.8089 -3.0193 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8305 -0.5261 0.7814 27 1 1.0612 1.8873 1.8713 28 1 2.7165 1.2517 2.0265 29 1 1.9527 3.9618 0.8476 30 1 2.6549 3.6926 2.4606 31 1 4.4019 4.3471 0.8267 32 1 4.6679 2.6887 1.4165 33 1 3.2905 3.4487 -1.1993 34 1 4.9461 2.8143 -1.0444 35 1 4.1676 0.4626 1.1442 36 1 8.6991 -1.2746 -2.5628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721906346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:00 Heat of formation + Delta-G solvation = -106.283362 kcal Electronic energy + Delta-G solvation = -19318.729027 eV Core-core repulsion = 16349.369031 eV Total energy + Delta-G solvation = -2969.359996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.21645 -35.05121 -34.76113 -33.79420 -33.10775 -32.77334 -29.62917 -28.24358 -26.05045 -24.59448 -22.32962 -21.40943 -19.61582 -18.70322 -17.26713 -16.49495 -15.58171 -15.30539 -15.07102 -14.71291 -14.06307 -14.00065 -13.77319 -13.36485 -13.30653 -12.69389 -12.24447 -12.03876 -11.93966 -11.85042 -11.59922 -11.18046 -11.13661 -10.96680 -10.58025 -10.52013 -10.36251 -10.21789 -10.13051 -10.00625 -9.81305 -9.17962 -8.82022 -8.40346 -8.11365 -6.62512 -5.23106 2.49898 3.10302 3.17419 3.23285 4.12091 4.32199 4.71684 4.77803 4.90219 4.99286 5.15464 5.30573 5.41449 5.48525 5.55035 5.61822 5.72096 5.79242 5.80468 5.91814 5.94557 6.04657 6.16227 6.19525 6.33167 6.42567 6.56568 6.60539 6.77854 7.01934 7.23320 7.41952 7.55846 8.04055 8.09734 8.97151 10.31522 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.007752 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.017763 B = 3611.110580 C = 4194.726481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.682 5.682 3 C 0.085 3.915 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.112 4.112 7 C -0.118 4.118 8 C -0.145 4.145 9 C 0.173 3.827 10 H 0.097 0.903 11 N -1.124 6.124 12 S 2.718 3.282 13 O -1.014 7.014 14 O -1.002 7.002 15 C -1.021 5.021 16 H 0.105 0.895 17 C 0.133 3.867 18 N -0.846 5.846 19 Si 0.917 3.083 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.263 1.263 23 H 0.064 0.936 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.343 0.657 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.395 0.605 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 8.520 5.072 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.311 5.311 3 C -0.026 4.026 4 H 0.101 0.899 5 C -0.188 4.188 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.185 4.185 9 C 0.064 3.936 10 H 0.115 0.885 11 N -0.878 5.878 12 S 2.817 3.183 13 O -1.004 7.004 14 O -0.992 6.992 15 C -1.154 5.154 16 H 0.123 0.877 17 C -0.084 4.084 18 N -0.476 5.476 19 Si 0.741 3.259 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.187 1.187 23 H 0.083 0.917 24 H 0.034 0.966 25 H 0.081 0.919 26 H 0.162 0.838 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.227 0.773 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.893 7.308 4.065 13.733 hybrid contribution 0.639 1.498 0.894 1.858 sum -10.254 8.807 4.959 14.398 Atomic orbital electron populations 1.22215 0.88470 1.01568 0.99827 1.60366 1.06756 1.13498 1.50508 1.21860 0.96489 0.89207 0.95071 0.89945 1.22246 1.00557 0.97713 0.98311 1.21463 0.97242 0.95983 1.00383 1.21486 0.96360 1.00800 0.96960 1.22211 1.03145 0.96350 0.96777 1.20535 0.87526 0.89521 0.96036 0.88473 1.55952 1.50893 1.63531 1.17433 1.00319 0.71938 0.73446 0.72595 1.93361 1.73358 1.73524 1.60157 1.93368 1.77507 1.74335 1.54016 1.30725 1.24522 1.09684 1.50463 0.87722 1.24728 0.96577 0.95571 0.91545 1.69907 1.28561 1.13499 1.35656 0.86227 0.80046 0.80922 0.78714 1.19354 1.20093 1.18696 0.91700 0.96566 0.91891 0.83821 0.92544 0.91506 0.92294 0.92479 0.92404 0.91209 0.91817 0.89602 0.77325 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.50 60.06 0.63 0.96 16 2 N -0.68 -9.74 6.44 -114.01 -0.73 -10.48 16 3 C 0.09 1.16 2.23 -67.71 -0.15 1.00 16 4 H 0.08 1.02 7.80 -51.93 -0.40 0.62 16 5 C -0.15 -1.72 4.99 -26.73 -0.13 -1.85 16 6 C -0.11 -1.24 5.92 -26.73 -0.16 -1.40 16 7 C -0.12 -1.55 5.77 -26.73 -0.15 -1.71 16 8 C -0.15 -2.18 5.64 -26.73 -0.15 -2.33 16 9 C 0.17 2.92 2.78 -67.93 -0.19 2.73 16 10 H 0.10 1.88 7.50 -51.93 -0.39 1.49 16 11 N -1.12 -21.69 4.55 -4.89 -0.02 -21.71 16 12 S 2.72 71.64 5.00 -107.50 -0.54 71.10 16 13 O -1.01 -29.84 18.02 -57.17 -1.03 -30.87 16 14 O -1.00 -29.56 17.36 -57.17 -0.99 -30.55 16 15 C -1.02 -27.66 9.57 30.60 0.29 -27.37 16 16 H 0.10 2.55 5.62 -52.49 -0.29 2.26 16 17 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 18 N -0.85 -25.13 13.19 55.43 0.73 -24.40 16 19 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.16 7.44 -51.93 -0.39 -0.23 16 25 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 26 H 0.34 4.81 8.52 -39.29 -0.33 4.47 16 27 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 28 H 0.07 0.80 6.49 -51.93 -0.34 0.47 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.00 7.45 -51.93 -0.39 0.61 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.48 5.74 -51.93 -0.30 1.18 16 35 H 0.40 6.70 6.82 -34.47 -0.23 6.46 16 36 H 0.29 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -34.71 296.16 -8.37 -43.08 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.12 Total: 10.13 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -0.11 Total: -26.34 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.03 Total: -56.59 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -2.02 Total: -61.42 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 71.64 SS G_CDS: -0.54 Total: 71.10 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.71 -8.37 -43.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721906346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.201 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds