Wall clock time and date at job start Mon Mar 30 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00355 * 2 1 4 4 H 1.09002 * 109.47043 * 324.99919 * 3 2 1 5 5 C 1.53002 * 109.47394 * 84.99974 * 3 2 1 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46978 * 300.00098 * 6 5 3 8 8 C 1.53002 * 109.47128 * 59.99726 * 7 6 5 9 9 C 1.52992 * 109.47106 * 300.00123 * 8 7 6 10 10 H 1.08998 * 109.46862 * 180.02562 * 9 8 7 11 11 N 1.46506 * 109.46999 * 299.99813 * 9 8 7 12 12 S 1.65593 * 120.00064 * 265.00246 * 11 9 8 13 13 O 1.42104 * 106.40348 * 178.54115 * 12 11 9 14 14 O 1.42103 * 106.40461 * 311.46089 * 12 11 9 15 15 C 1.76200 * 107.21941 * 65.00118 * 12 11 9 16 16 H 1.07999 * 120.00071 * 0.02562 * 15 12 11 17 17 C 1.37880 * 120.00008 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99969 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99847 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47070 * 90.00113 * 19 17 15 21 21 H 1.48499 * 109.47036 * 209.99630 * 19 17 15 22 22 H 1.48499 * 109.47077 * 330.00089 * 19 17 15 23 23 H 1.08998 * 109.47381 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46948 * 300.00869 * 1 2 3 25 25 H 1.09006 * 109.47033 * 59.99701 * 1 2 3 26 26 H 1.00901 * 110.99813 * 123.95342 * 2 1 3 27 27 H 1.09000 * 109.46986 * 300.00133 * 5 3 2 28 28 H 1.09002 * 109.47075 * 59.99404 * 5 3 2 29 29 H 1.09002 * 109.47045 * 59.99931 * 6 5 3 30 30 H 1.08998 * 109.47171 * 179.97438 * 6 5 3 31 31 H 1.08996 * 109.46698 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46838 * 299.99316 * 7 6 5 33 33 H 1.09002 * 109.47070 * 60.00059 * 8 7 6 34 34 H 1.08996 * 109.46550 * 179.97438 * 8 7 6 35 35 H 0.97004 * 119.99556 * 85.00646 * 11 9 8 36 36 H 0.97000 * 120.00061 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0609 1.8926 1.4370 6 6 2.6087 3.3212 1.4370 7 6 4.0119 3.3293 0.8271 8 6 3.9465 2.8080 -0.6099 9 6 3.3987 1.3795 -0.6098 10 1 3.3525 1.0081 -1.6335 11 7 4.2804 0.5185 0.1823 12 16 5.4696 -0.3593 -0.5643 13 8 6.1620 -1.0534 0.4645 14 8 4.8541 -1.0139 -1.6652 15 6 6.6164 0.7910 -1.2472 16 1 6.4535 1.8519 -1.1270 17 6 7.7222 0.3368 -1.9341 18 7 7.9214 -0.9551 -2.0792 19 14 8.9383 1.5563 -2.6575 20 1 9.9926 1.8572 -1.6559 21 1 9.5617 0.9724 -3.8721 22 1 8.2273 2.8089 -3.0193 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8305 -0.5261 0.7814 27 1 1.0612 1.8873 1.8713 28 1 2.7165 1.2517 2.0265 29 1 1.9527 3.9618 0.8476 30 1 2.6549 3.6926 2.4606 31 1 4.4019 4.3471 0.8267 32 1 4.6679 2.6887 1.4165 33 1 3.2905 3.4487 -1.1993 34 1 4.9461 2.8143 -1.0444 35 1 4.1676 0.4626 1.1442 36 1 8.6991 -1.2746 -2.5628 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721906346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:59 Heat of formation + Delta-G solvation = -135.603837 kcal Electronic energy + Delta-G solvation = -19320.000458 eV Core-core repulsion = 16349.369031 eV Total energy + Delta-G solvation = -2970.631427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.36422 -37.27948 -36.03046 -35.83157 -35.15997 -34.18706 -30.72457 -29.46812 -28.18442 -25.57648 -23.41798 -22.48001 -21.19434 -20.42148 -19.07000 -18.35938 -17.26977 -16.64584 -16.49652 -16.17295 -15.77106 -15.46505 -15.17179 -14.83911 -14.37124 -13.96295 -13.72393 -13.45591 -13.26597 -13.15411 -12.98913 -12.84109 -12.56468 -12.41629 -12.32045 -12.28272 -12.07108 -11.94528 -11.59829 -11.36497 -11.21357 -11.04771 -10.78771 -10.01990 -9.16236 -8.70177 -7.41229 0.48576 1.35499 1.35735 1.51421 2.23626 2.63069 3.06978 3.34559 3.79018 3.86916 3.93344 4.16185 4.28467 4.38568 4.49514 4.55392 4.58916 4.61416 4.71218 4.77201 4.85557 4.96951 5.02748 5.08785 5.21045 5.23719 5.32871 5.33990 5.44737 5.53407 5.65567 6.02252 6.22619 6.50477 6.52899 6.84686 8.26006 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025919 B = 0.007752 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.017763 B = 3611.110580 C = 4194.726481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.711 5.711 3 C 0.092 3.908 4 H 0.101 0.899 5 C -0.144 4.144 6 C -0.106 4.106 7 C -0.119 4.119 8 C -0.144 4.144 9 C 0.164 3.836 10 H 0.064 0.936 11 N -1.104 6.104 12 S 2.722 3.278 13 O -1.053 7.053 14 O -1.044 7.044 15 C -1.036 5.036 16 H 0.127 0.873 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.987 3.013 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.245 1.245 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.341 0.659 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.408 0.592 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 11.306 5.601 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.341 5.341 3 C -0.019 4.019 4 H 0.119 0.881 5 C -0.183 4.183 6 C -0.144 4.144 7 C -0.156 4.156 8 C -0.184 4.184 9 C 0.056 3.944 10 H 0.083 0.917 11 N -0.864 5.864 12 S 2.823 3.177 13 O -1.044 7.044 14 O -1.033 7.033 15 C -1.169 5.169 16 H 0.144 0.856 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.805 3.195 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.168 1.168 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.159 0.841 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.243 0.757 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.912 10.090 4.614 16.279 hybrid contribution 0.848 0.614 0.742 1.283 sum -11.065 10.705 5.357 16.300 Atomic orbital electron populations 1.22245 0.86488 1.02196 1.00911 1.60341 1.08837 1.14075 1.50866 1.21799 0.94124 0.89461 0.96564 0.88120 1.22208 1.01686 0.97912 0.96509 1.21441 0.95777 0.95748 1.01477 1.21497 0.97844 1.01072 0.95219 1.22176 1.02050 0.95446 0.98686 1.20799 0.89451 0.89866 0.94320 0.91742 1.55251 1.49759 1.63282 1.18065 0.99775 0.72357 0.73730 0.71846 1.93293 1.74880 1.75229 1.60962 1.93309 1.78315 1.75947 1.55762 1.31071 1.24662 1.10868 1.50299 0.85555 1.26010 0.98930 0.97616 0.91783 1.70015 1.29900 1.15949 1.37145 0.85176 0.77427 0.78565 0.78297 1.18053 1.19049 1.16770 0.91453 0.94578 0.91493 0.84137 0.90402 0.92393 0.90522 0.90843 0.90877 0.92994 0.89111 0.92264 0.75721 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.50 127.69 1.34 1.96 16 2 N -0.71 -19.60 6.44 -514.61 -3.32 -22.92 16 3 C 0.09 2.32 2.23 44.92 0.10 2.42 16 4 H 0.10 2.19 7.80 -2.39 -0.02 2.17 16 5 C -0.14 -2.89 4.99 30.59 0.15 -2.73 16 6 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 7 C -0.12 -2.81 5.77 30.60 0.18 -2.64 16 8 C -0.14 -4.10 5.64 30.59 0.17 -3.93 16 9 C 0.16 5.46 2.78 44.99 0.13 5.59 16 10 H 0.06 2.57 7.50 -2.39 -0.02 2.55 16 11 N -1.10 -43.24 4.55 -169.39 -0.77 -44.01 16 12 S 2.72 148.55 5.00 -56.49 -0.28 148.27 16 13 O -1.05 -64.39 18.02 -128.00 -2.31 -66.70 16 14 O -1.04 -64.32 17.36 -128.00 -2.22 -66.54 16 15 C -1.04 -56.93 9.57 67.74 0.65 -56.28 16 16 H 0.13 6.16 5.62 -2.91 -0.02 6.14 16 17 C 0.07 3.87 5.46 84.66 0.46 4.33 16 18 N -0.90 -54.79 13.19 21.45 0.28 -54.51 16 19 Si 0.99 41.68 29.54 68.60 2.03 43.70 16 20 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.24 -9.51 7.11 99.48 0.71 -8.81 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 0.59 7.44 -2.38 -0.02 0.57 16 25 H 0.07 1.29 8.06 -2.38 -0.02 1.27 16 26 H 0.34 9.38 8.52 -89.69 -0.76 8.61 16 27 H 0.08 1.28 7.45 -2.39 -0.02 1.27 16 28 H 0.06 1.27 6.49 -2.39 -0.02 1.25 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.41 7.45 -2.39 -0.02 1.39 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.99 5.74 -2.39 -0.01 1.98 16 35 H 0.41 13.94 6.82 -96.74 -0.66 13.28 16 36 H 0.30 16.29 8.31 -92.71 -0.77 15.52 16 Total: -1.00 -77.38 296.16 -3.55 -80.94 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.33 Total: 34.79 kcal Atomic # 6 Polarization: -56.39 SS G_CDS: 3.36 Total: -53.03 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -3.80 Total: -121.44 kcal Atomic # 8 Polarization: -128.71 SS G_CDS: -4.53 Total: -133.24 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 148.55 SS G_CDS: -0.28 Total: 148.27 kcal Total: -77.38 -3.55 -80.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721906346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.667 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds