Wall clock time and date at job start Mon Mar 30 2020 05:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00167 * 2 1 4 4 H 1.09007 * 109.46477 * 324.99652 * 3 2 1 5 5 C 1.53002 * 109.47216 * 84.99538 * 3 2 1 6 6 C 1.52999 * 109.46786 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47244 * 299.99839 * 6 5 3 8 8 C 1.53002 * 109.47098 * 60.00352 * 7 6 5 9 9 C 1.52999 * 109.46786 * 299.99929 * 8 7 6 10 10 H 1.09002 * 109.47710 * 300.00219 * 9 8 7 11 11 N 1.46508 * 109.47056 * 179.97438 * 9 8 7 12 12 S 1.65600 * 119.99756 * 94.99973 * 11 9 8 13 13 O 1.42093 * 106.40376 * 178.54297 * 12 11 9 14 14 O 1.42102 * 106.40379 * 311.46512 * 12 11 9 15 15 C 1.76205 * 107.21558 * 65.00205 * 12 11 9 16 16 H 1.07999 * 119.99910 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99893 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00035 * 180.02562 * 17 15 12 19 19 Si 1.86799 * 120.00024 * 0.02562 * 17 15 12 20 20 H 1.48501 * 109.47173 * 90.00084 * 19 17 15 21 21 H 1.48498 * 109.47113 * 210.00157 * 19 17 15 22 22 H 1.48502 * 109.47131 * 330.00002 * 19 17 15 23 23 H 1.09002 * 109.47401 * 300.00266 * 1 2 3 24 24 H 1.09001 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46970 * 60.00412 * 1 2 3 26 26 H 1.00901 * 111.00367 * 236.04169 * 2 1 3 27 27 H 1.08995 * 109.47126 * 299.99880 * 5 3 2 28 28 H 1.08998 * 109.47253 * 60.00420 * 5 3 2 29 29 H 1.09006 * 109.47318 * 180.02562 * 6 5 3 30 30 H 1.09002 * 109.47889 * 60.00305 * 6 5 3 31 31 H 1.08998 * 109.47098 * 300.00221 * 7 6 5 32 32 H 1.08997 * 109.47640 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47014 * 180.02562 * 8 7 6 34 34 H 1.08998 * 109.47253 * 59.99965 * 8 7 6 35 35 H 0.96993 * 120.00058 * 275.00817 * 11 9 8 36 36 H 0.97000 * 120.00324 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3397 2.0122 -0.5896 5 6 2.0608 1.8927 1.4370 6 6 2.6086 3.3212 1.4368 7 6 4.0118 3.3294 0.8271 8 6 3.9465 2.8081 -0.6099 9 6 3.3987 1.3795 -0.6097 10 1 4.0546 0.7389 -0.0203 11 7 3.3356 0.8806 -1.9858 12 16 4.5833 -0.0197 -2.5981 13 8 4.2098 -0.3750 -3.9222 14 8 5.7770 0.6873 -2.2906 15 6 4.6435 -1.5213 -1.6781 16 1 3.9338 -1.6963 -0.8831 17 6 5.5960 -2.4733 -1.9740 18 7 5.6406 -3.5943 -1.2877 19 14 6.8231 -2.1709 -3.3495 20 1 8.0264 -1.4962 -2.8000 21 1 7.2165 -3.4680 -3.9560 22 1 6.2018 -1.3080 -4.3862 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.8307 -0.5262 -0.7813 27 1 1.0611 1.8873 1.8712 28 1 2.7165 1.2518 2.0265 29 1 2.6555 3.6925 2.4606 30 1 1.9526 3.9619 0.8475 31 1 4.6678 2.6888 1.4165 32 1 4.4022 4.3470 0.8274 33 1 4.9462 2.8135 -1.0441 34 1 3.2905 3.4487 -1.1993 35 1 2.5630 1.0776 -2.5381 36 1 6.3105 -4.2642 -1.4960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721906348.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:03 Heat of formation + Delta-G solvation = -96.425975 kcal Electronic energy + Delta-G solvation = -19252.642932 eV Core-core repulsion = 16283.710385 eV Total energy + Delta-G solvation = -2968.932548 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.06642 -35.61282 -34.64143 -34.41010 -33.70462 -32.98902 -29.54677 -28.14749 -26.38353 -24.66243 -22.05933 -21.28954 -19.96525 -18.91549 -17.44950 -16.72637 -16.35841 -15.07233 -15.03331 -14.79852 -14.40584 -13.99583 -13.69472 -13.40909 -13.19842 -12.86151 -12.79668 -12.53806 -12.22330 -11.61135 -11.47818 -11.36301 -11.13733 -11.00928 -10.83634 -10.60926 -10.56347 -10.50041 -10.43344 -10.02098 -9.71707 -9.19023 -9.18763 -8.60874 -8.19500 -6.77134 -5.31042 2.07570 3.08584 3.19215 3.28300 3.96982 4.26507 4.37835 4.62699 4.82647 5.03516 5.15424 5.30696 5.34204 5.40150 5.50862 5.57539 5.62775 5.66312 5.69583 5.84040 5.99905 6.00550 6.08470 6.17427 6.25083 6.27403 6.33522 6.46723 6.58478 6.75528 7.27790 7.50046 7.65263 7.69845 8.27415 8.74185 10.34827 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.007861 C = 0.007090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.302917 B = 3560.964851 C = 3948.105955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.690 5.690 3 C 0.085 3.915 4 H 0.044 0.956 5 C -0.106 4.106 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.158 3.842 10 H 0.101 0.899 11 N -1.124 6.124 12 S 2.673 3.327 13 O -1.011 7.011 14 O -1.010 7.010 15 C -1.015 5.015 16 H 0.127 0.873 17 C 0.155 3.845 18 N -0.820 5.820 19 Si 0.800 3.200 20 H -0.247 1.247 21 H -0.256 1.256 22 H -0.222 1.222 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.017 0.983 26 H 0.356 0.644 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.401 0.599 36 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.504 10.594 4.287 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.324 5.324 3 C -0.027 4.027 4 H 0.062 0.938 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.176 4.176 9 C 0.050 3.950 10 H 0.119 0.881 11 N -0.877 5.877 12 S 2.775 3.225 13 O -1.001 7.001 14 O -0.999 6.999 15 C -1.149 5.149 16 H 0.145 0.855 17 C -0.065 4.065 18 N -0.449 5.449 19 Si 0.620 3.380 20 H -0.171 1.171 21 H -0.180 1.180 22 H -0.144 1.144 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.036 0.964 26 H 0.177 0.823 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.668 10.562 4.393 13.240 hybrid contribution -0.246 -0.227 -1.183 1.230 sum -6.915 10.335 3.209 12.842 Atomic orbital electron populations 1.22214 0.88489 1.01676 0.99698 1.60365 1.07044 1.13401 1.51550 1.21800 0.94952 0.89636 0.96305 0.93810 1.21528 1.01293 0.95671 0.96031 1.21570 0.96799 0.96821 1.00547 1.21530 0.96940 1.01073 0.96172 1.22082 1.02794 0.95847 0.96874 1.20842 0.96597 0.95562 0.82045 0.88149 1.55716 1.38710 1.71449 1.21860 1.01442 0.71868 0.75480 0.73736 1.93473 1.83108 1.84661 1.38903 1.93405 1.45764 1.75169 1.85589 1.30457 1.27486 1.21677 1.35304 0.85503 1.24394 0.94645 0.93330 0.94118 1.69992 1.32120 1.06160 1.36662 0.87891 0.84410 0.81775 0.83888 1.17076 1.18019 1.14386 0.92148 0.91542 0.96427 0.82325 0.92138 0.90740 0.91966 0.92365 0.91335 0.91954 0.89883 0.92094 0.76765 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.50 60.07 0.63 0.99 16 2 N -0.69 -10.62 6.66 -114.00 -0.76 -11.38 16 3 C 0.08 1.20 2.10 -67.71 -0.14 1.05 16 4 H 0.04 0.58 7.80 -51.92 -0.40 0.17 16 5 C -0.11 -1.32 5.43 -26.73 -0.15 -1.46 16 6 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 7 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 8 C -0.14 -2.02 5.53 -26.73 -0.15 -2.16 16 9 C 0.16 2.62 2.22 -67.93 -0.15 2.47 16 10 H 0.10 1.89 7.85 -51.93 -0.41 1.48 16 11 N -1.12 -20.69 4.53 -4.89 -0.02 -20.71 16 12 S 2.67 65.05 4.15 -107.50 -0.45 64.60 16 13 O -1.01 -26.79 16.02 -57.17 -0.92 -27.70 16 14 O -1.01 -26.31 16.09 -57.17 -0.92 -27.23 16 15 C -1.01 -27.60 10.12 30.60 0.31 -27.29 16 16 H 0.13 3.47 8.06 -52.49 -0.42 3.04 16 17 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 18 N -0.82 -23.50 13.96 55.43 0.77 -22.73 16 19 Si 0.80 20.55 26.54 -169.99 -4.51 16.04 16 20 H -0.25 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.22 -5.82 5.61 56.52 0.32 -5.50 16 23 H 0.06 0.67 7.44 -51.93 -0.39 0.29 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.02 0.20 8.06 -51.93 -0.42 -0.22 16 26 H 0.36 6.09 7.65 -39.29 -0.30 5.79 16 27 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.40 7.64 -51.93 -0.40 1.00 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 6.35 8.84 -34.47 -0.30 6.05 16 36 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 297.05 15.07 4.48 4.48 Total: -1.00 -31.53 297.05 -7.99 -39.53 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.61 Total: 10.26 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: -0.06 Total: -25.15 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.01 Total: -54.82 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.84 Total: -54.94 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.51 Total: 16.04 kcal Atomic # 16 Polarization: 65.05 SS G_CDS: -0.45 Total: 64.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.53 -7.99 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721906348.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds